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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012772 ID=TCONS_00012772|Name=TCONS_00012772|organism=Clytia hemisphaerica|type=transcript|length=1057bp
CGCTCTACAAAACATCAACGTCTTGTTCAGCATAATCACCTCCGGATCCG
TAACGAAGCTGGTCAAAGATTTCAATGATGAATGGGACAACAAAACCAAA
GCCAAGCTGTATGACGCTCTAACACCTTCGATCAAGATGAAACCAATCTA
TCGGACAGCATTTTCTATGCTACGCAGTTCATTACGGATGGAGCAAGCTC
ACAAGTCGGCAAAACCATCATCGTGCTGACAGATGGTTATCCTTCTGCTC
CTAAAAAGCTTCAAACAAGTCTCTACCACGCTGAAAGTATGAATGTGCAA
ACACTTGCTATTGGAATTGGATATTTCActgaaggaatcttcgaatattT
TCCTTATTTCGTCCTTGCTGATGACCCGAAGCTTCTACCAGGTGCTTTGC
AAAGCTTCTATCTCGgtgaacaaaaattggaggGACTAGCAAGTGCAGCT
GGTCGTGTTGTAACAGAAAAAGTGCTGTACAAAGACAAACAACTTGCCAA
TATGGATGAAGCATGGGACTTGGAGATGGATAAGATCTATCTTGAGGAGT
ACGAAAAATCGAAAAGGGATTTGACGCTTAGAGTGTTTAGTGTTGTTCAA
GCAGCGACAAAACTCAAGATAAGACTTTGCTTTGTGCTCGACACAACAGG
ATCGATGGGTGGTTATATCGAGATGGCAAAGAACAAAATTCAGATGATCa
ctgaaaatatcaaaaaacgaATCTTTGATGAGTCCAAGAGAGATGCTGAT
CTTCAAATCGGTTTTATCGCTTATAAGATTCGAGGACAAGTTGGACATCT
CGACAAGATCCCATTTACCTCAGATCTTGCAGCTTTGCAGAATTTCATTA
ACAGTCAAAGGGCCAGTGTTGGAAGGGGCTTTGAAGATAAGGAGGATGGA
TTATTAGGACTTGGTTTCAAATGGAGTGAATGGGAAGGTCCCAAAGAAGA
TTGGCGTGAAGATGGTACTGTGAAATTCCTGGTGTTAATTGGAGACTATC
CTGATCATGGAAATGTTGGTACAATGTTTCAAACGGGGCAGAAATACGCA
CTTAAAA Run BLAST on NCBI protein sequence of TCONS_00012772-protein >TCONS_00012772-protein ID=TCONS_00012772-protein|Name=TCONS_00012772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MNVQTLAIGIGYFTEGIFEYFPYFVLADDPKLLPGALQSFYLGEQKLEGL
ASAAGRVVTEKVLYKDKQLANMDEAWDLEMDKIYLEEYEKSKRDLTLRVF
SVVQAATKLKIRLCFVLDTTGSMGGYIEMAKNKIQMITENIKKRIFDESK
RDADLQIGFIAYKIRGQVGHLDKIPFTSDLAALQNFINSQRASVGRGFED
KEDGLLGLGFKWSEWEGPKEDWREDGTVKFLVLIGDYPDHGNVGTMFQTG
QKYALK Run BLAST on NCBI transcript from alignment at sc0000147:522408..523464 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012772 ID=TCONS_00012772|Name=TCONS_00012772|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at sc0000147:522408..523464 (Clytia hemisphaerica)
TTTTAAGTGCGTATTTCTGCCCCGTTTGAAACATTGTACCAACATTTCCA
TGATCAGGATAGTCTCCAATTAACACCAGGAATTTCACAGTACCATCTTC
ACGCCAATCTTCTTTGGGACCTTCCCATTCACTCCATTTGAAACCAAGTC
CTAATAATCCATCCTCCTTATCTTCAAAGCCCCTTCCAACACTGGCCCTT
TGACTGTTAATGAAATTCTGCAAAGCTGCAAGATCTGAGGTAAATGGGAT
CTTGTCGAGATGTCCAACTTGTCCTCGAATCTTATAAGCGATAAAACCGA
TTTGAAGATCAGCATCTCTCTTGGACTCATCAAAGATtcgttttttgata
ttttcagtGATCATCTGAATTTTGTTCTTTGCCATCTCGATATAACCACC
CATCGATCCTGTTGTGTCGAGCACAAAGCAAAGTCTTATCTTGAGTTTTG
TCGCTGCTTGAACAACACTAAACACTCTAAGCGTCAAATCCCTTTTCGAT
TTTTCGTACTCCTCAAGATAGATCTTATCCATCTCCAAGTCCCATGCTTC
ATCCATATTGGCAAGTTGTTTGTCTTTGTACAGCACTTTTTCTGTTACAA
CACGACCAGCTGCACTTGCTAGTCcctccaatttttgttcacCGAGATAG
AAGCTTTGCAAAGCACCTGGTAGAAGCTTCGGGTCATCAGCAAGGACGAA
ATAAGGAAaatattcgaagattccttcagTGAAATATCCAATTCCAATAG
CAAGTGTTTGCACATTCATACTTTCAGCGTGGTAGAGACTTGTTTGAAGC
TTTTTAGGAGCAGAAGGATAACCATCTGTCAGCACGATGATGGTTTTGCC
GACTTGTGAGCTTGCTCCATCCGTAATGAACTGCGTAGCATAGAAAATGC
TGTCCGATAGATTGGTTTCATCTTGATCGAAGGTGTTAGAGCGTCATACA
GCTTGGCTTTGGTTTTGTTGTCCCATTCATCATTGAAATCTTTGACCAGC
TTCGTTACGGATCCGGAGGTGATTATGCTGAACAAGACGTTGATGTTTTG
TAGAGCG Coding sequence (CDS) from alignment at sc0000147:522408..523464 >TCONS_00012772 ID=TCONS_00012772|Name=TCONS_00012772|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000147:522408..523464 (Clytia hemisphaerica)
TTTAAGTGCGTATTTCTGCCCCGTTTGAAACATTGTACCAACATTTCCAT
GATCAGGATAGTCTCCAATTAACACCAGGAATTTCACAGTACCATCTTCA
CGCCAATCTTCTTTGGGACCTTCCCATTCACTCCATTTGAAACCAAGTCC
TAATAATCCATCCTCCTTATCTTCAAAGCCCCTTCCAACACTGGCCCTTT
GACTGTTAATGAAATTCTGCAAAGCTGCAAGATCTGAGGTAAATGGGATC
TTGTCGAGATGTCCAACTTGTCCTCGAATCTTATAAGCGATAAAACCGAT
TTGAAGATCAGCATCTCTCTTGGACTCATCAAAGATtcgttttttgatat
tttcagtGATCATCTGAATTTTGTTCTTTGCCATCTCGATATAACCACCC
ATCGATCCTGTTGTGTCGAGCACAAAGCAAAGTCTTATCTTGAGTTTTGT
CGCTGCTTGAACAACACTAAACACTCTAAGCGTCAAATCCCTTTTCGATT
TTTCGTACTCCTCAAGATAGATCTTATCCATCTCCAAGTCCCATGCTTCA
TCCATATTGGCAAGTTGTTTGTCTTTGTACAGCACTTTTTCTGTTACAAC
ACGACCAGCTGCACTTGCTAGTCcctccaatttttgttcacCGAGATAGA
AGCTTTGCAAAGCACCTGGTAGAAGCTTCGGGTCATCAGCAAGGACGAAA
TAAGGAAaatattcgaagattccttcagTGAAATATCCAATTCCAATAGC
AAGTGTTTGCACATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012772-exon-sc0000147-1491911889:522408..523464 | TCONS_00012772-exon-sc0000147-1491911889:522408..523464 | Clytia hemisphaerica | exon |
| TCONS_00012772-exon-sc0000147-1510915933:522408..523464 | TCONS_00012772-exon-sc0000147-1510915933:522408..523464 | Clytia hemisphaerica | exon |
| TCONS_00012772-exon-sc0000147-1575043694:522408..523464 | TCONS_00012772-exon-sc0000147-1575043694:522408..523464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:522408..523464 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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