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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012774 ID=TCONS_00012774|Name=TCONS_00012774|organism=Clytia hemisphaerica|type=transcript|length=626bp
TTCTTTTTCAGATGTTGAGGCTTTGAAGTGTTACACTTGTTCTACATTGG
GCGATCCAAAAGTTTGTAAGCTTGAACAAGAACTGGAAGAAATGCAAAAG
GAGTGTGTCTCTGGATCAAGATGCTTAACAATGTCATACAGAGAAAACCA
TAATGGAGGTCAACGGCCTCGATTTGTGAAGAAGTGTTCAAACCCGACGA
TGGATATTTGCGATTCTCattgtaaaaatgtcaaaaacgtCATTCCTAAT
ACATGCAGGACATCATGCTGCTCAACGAACTTGGGCAACGAAGAGGTGAA
CGAGAAATATATCTGGTATGCTTTCAACACAGGAAAGTCAAGGTCCAACA
GCGCCAATACAAACCATATGAAAAATGACTTGGTCACCTTCTGTTTGACA
ATTGTGATCTATCTGTTGACTTATGTATAAAATAAGCGTCAACTATTGAA
TAATTTGTAGAAtaacatgatttttttttcaaataaaaagccCACTAATT
TGcctaatttaaaatattttttgatgagcaTCGGACCGAAAGGTTGAGCG
AAACGTCTTTTTCATTTAATCACAACAAAGTTTGTGAATTAACTTTTGAC
CTTAGGTTAACTCAATCTGAATTCGA Run BLAST on NCBI protein sequence of TCONS_00012774-protein >TCONS_00012774-protein ID=TCONS_00012774-protein|Name=TCONS_00012774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
SFSDVEALKCYTCSTLGDPKVCKLEQELEEMQKECVSGSRCLTMSYRENH
NGGQRPRFVKKCSNPTMDICDSHCKNVKNVIPNTCRTSCCSTNLGNEEVN
EKYIWYAFNTGKSRSNSANTNHMKNDLVTFCLTIVIYLLTYV Run BLAST on NCBI transcript from alignment at sc0000156:20383..21440+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012774 ID=TCONS_00012774|Name=TCONS_00012774|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0000156:20383..21440+ (Clytia hemisphaerica)
TTCTTTTTCAGATGTTGAGGCTTTGAAGTGTTACACTTGTTCTACATTGG
GCGATCCAAAAGTTTGTAAGCTTGAACAAGAACTGGAAGAAATGCAAAAG
GAGTGTGTCTCTGGATCAAGATGCTTAACAATGTCATACAGAGAAAACCA
TAATGGAGGTCAACGGCCTCGATTTGTGAAGAAGTGTTCAAACCCGACGA
TGGATATTTGCGATTCTCattgtaaaaatgtcaaaaacgtCATTCCTAAT
ACATGCAGGGTAAGAATTTAGAAGTCATGAAATTAATAACTAAGTATAtt
aaacataaggcttcaaattttcttgtcaaaatacaaaaaaatgctaaaat
tttaaaaacatataccgggtgtttcaaaaaagaaaatacaagTTTGACGT
GAGGTTGTGaaataactaaaaatgttataaatctaaatttttcataatca
gaaagaggaaaggctaacttaaattttgagctatcatactttAAATTTGC
TTCACGTGTTGAAATGTTATTCTTTCATTGTTATTACTCTTTTAAAAAAG
CGTCATTTATGAGGAAAAAAAAGGGGGCGCAAAGGGTTAAACATGAGTCA
ACTCAAGGCACGCGGTCGCTAAGTAACAGCTGAAATAAAGACTTCATCTT
TTTTGATCAGATTCGCATGTTTGTCTTATTTTCTTTCTTAGACATCATGC
TGCTCAACGAACTTGGGCAACGAAGAGGTGAACGAGAAATATATCTGGTA
TGCTTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAACCATA
TGAAAAATGACTTGGTCACCTTCTGTTTGACAATTGTGATCTATCTGTTG
ACTTATGTATAAAATAAGCGTCAACTATTGAATAATTTGTAGAAtaacat
gatttttttttcaaataaaaagccCACTAATTTGcctaatttaaaatatt
ttttgatgagcaTCGGACCGAAAGGTTGAGCGAAACGTCTTTTTCATTTA
ATCACAACAAAGTTTGTGAATTAACTTTTGACCTTAGGTTAACTCAATCT
GAATTCGA Coding sequence (CDS) from alignment at sc0000156:20383..21440+ >TCONS_00012774 ID=TCONS_00012774|Name=TCONS_00012774|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000156:20383..21440+ (Clytia hemisphaerica)
TCTTTTTCAGATGTTGAGGCTTTGAAGTGTTACACTTGTTCTACATTGGG
CGATCCAAAAGTTTGTAAGCTTGAACAAGAACTGGAAGAAATGCAAAAGG
AGTGTGTCTCTGGATCAAGATGCTTAACAATGTCATACAGAGAAAACCAT
AATGGAGGTCAACGGCCTCGATTTGTGAAGAAGTGTTCAAACCCGACGAT
GGATATTTGCGATTCTCattgtaaaaatgtcaaaaacgtCATTCCTAATA
CATGCAGGACATCATGCTGCTCAACGAACTTGGGCAACGAAGAGGTGAAC
GAGAAATATATCTGGTATGCTTTCAACACAGGAAAGTCAAGGTCCAACAG
CGCCAATACAAACCATATGAAAAATGACTTGGTCACCTTCTGTTTGACAA
TTGTGATCTATCTGTTGACTTATGTATAATCTTTTTCAGATGTTGAGGCT
TTGAAGTGTTACACTTGTTCTACATTGGGCGATCCAAAAGTTTGTAAGCT
TGAACAAGAACTGGAAGAAATGCAAAAGGAGTGTGTCTCTGGATCAAGAT
GCTTAACAATGTCATACAGAGAAAACCATAATGGAGGTCAACGGCCTCGA
TTTGTGAAGAAGTGTTCAAACCCGACGATGGATATTTGCGATTCTCattg
taaaaatgtcaaaaacgtCATTCCTAATACATGCAGGACATCATGCTGCT
CAACGAACTTGGGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGCT
TTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAACCATATGAA
AAATGACTTGGTCACCTTCTGTTTGACAATTGTGATCTATCTGTTGACTT
ATGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012774-exon-sc0000156-1491911889:20383..20641 | TCONS_00012774-exon-sc0000156-1491911889:20383..20641 | Clytia hemisphaerica | exon |
| TCONS_00012774-exon-sc0000156-1510915933:20383..20641 | TCONS_00012774-exon-sc0000156-1510915933:20383..20641 | Clytia hemisphaerica | exon |
| TCONS_00012774-exon-sc0000156-1575043694:20383..20641 | TCONS_00012774-exon-sc0000156-1575043694:20383..20641 | Clytia hemisphaerica | exon |
| TCONS_00012774-exon-sc0000156-1491911889:21074..21440 | TCONS_00012774-exon-sc0000156-1491911889:21074..21440 | Clytia hemisphaerica | exon |
| TCONS_00012774-exon-sc0000156-1510915933:21074..21440 | TCONS_00012774-exon-sc0000156-1510915933:21074..21440 | Clytia hemisphaerica | exon |
| TCONS_00012774-exon-sc0000156-1575043694:21074..21440 | TCONS_00012774-exon-sc0000156-1575043694:21074..21440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:20383..21440 + |
Blast
The following BLAST results are available for this feature:
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