TCONS_00012797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012797
Unique NameTCONS_00012797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012797 ID=TCONS_00012797|Name=TCONS_00012797|organism=Clytia hemisphaerica|type=transcript|length=601bp
AAACctgttgtttttgtttcaatttttctttctccaAATAATGCAATGCA
ACattccaaaacaaaacatctgACTCATCACCATAAATCCTAGCAACTTT
ACTGCATCTCTCCGCAGTTCCAAGAGGACAATTTTCAAGTCGATCACAAA
TATCTTCTGGCATATTATCTAACGAATCTTGCACTGCTCTTTCTTctctt
gaatctgaaaattctttAGCTTTGTACTGCTCTCTCCATTTTTGATGTTG
TAAAACGCCCTTCATTTTGAGTGAATGGGCGGGTTCAAGAAGGCGGGGAT
TAAACAATGCCTGATCTAAGTCTTTTTCTTGAACATTGGAATTAGCTGAC
GTCAGTACTGGGTCCATAACTCGAGCAGACCCGTCAGATAACAAAAGAAC
TGGTAAGGAGCTAGATAGCCAATCAGCATCGAGAATAGCGATACCGTCCT
TTGATGTCTTGATGTTAGCAAGACTTCGGATTTCCACGCTATCCCAAATC
TCAACACCGTCATTGAATAGCATAAGAATTCTCATATTCCCTTTACCGGG
AGCGAACTTCAAACGTTTGATTGGTCCCCGGttcgttggaaacactctaa
a
Run BLAST on NCBI

transcript from alignment at sc0000156:382298..382953+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012797 ID=TCONS_00012797|Name=TCONS_00012797|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at sc0000156:382298..382953+ (Clytia hemisphaerica)
AAACctgttgtttttgtttcaatttttctttctccaAATAATGCAATGCA
ACattccaaaacaaaacatctgACTCATCGCCATAAATCCTGNTAATGCA
ATGCAACattccaaaacaaaacatctgACTCATCACCATAAATCCTAGCA
ACTTTACTGCATCTCTCCGCAGTTCCAAGAGGACAATTTTCAAGTCGATC
ACAAATATCTTCTGGCATATTATCTAACGAATCTTGCACTGCTCTTTCTT
ctcttgaatctgaaaattctttAGCTTTGTACTGCTCTCTCCATTTTTGA
TGTTGTAAAACGCCCTTCATTTTGAGTGAATGGGCGGGTTCAAGAAGGCG
GGGATTAAACAATGCCTGATCTAAGTCTTTTTCTTGAACATTGGAATTAG
CTGACGTCAGTACTGGGTCCATAACTCGAGCAGACCCGTCAGATAACAAA
AGAACTGGTAAGGAGCTAGATAGCCAATCAGCATCGAGAATAGCGATACC
GTCCTTTGATGTCTTGATGTTAGCAAGACTTCGGATTTCCACGCTATCCC
AAATCTCAACACCGTCATTGAATAGCATAAGAATTCTCATATTCCCTTTA
CCGGGAGCGAACTTCAAACGTTTGATTGGTCCCCGGttcgttggaaacac
tctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007183XLOC_007183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012797-exon-sc0000156-1491911889:382298..382349TCONS_00012797-exon-sc0000156-1491911889:382298..382349Clytia hemisphaericaexon
TCONS_00012797-exon-sc0000156-1510915933:382298..382349TCONS_00012797-exon-sc0000156-1510915933:382298..382349Clytia hemisphaericaexon
TCONS_00012797-exon-sc0000156-1575043694:382298..382349TCONS_00012797-exon-sc0000156-1575043694:382298..382349Clytia hemisphaericaexon
TCONS_00012797-exon-sc0000156-1491911889:382405..382953TCONS_00012797-exon-sc0000156-1491911889:382405..382953Clytia hemisphaericaexon
TCONS_00012797-exon-sc0000156-1510915933:382405..382953TCONS_00012797-exon-sc0000156-1510915933:382405..382953Clytia hemisphaericaexon
TCONS_00012797-exon-sc0000156-1575043694:382405..382953TCONS_00012797-exon-sc0000156-1575043694:382405..382953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:382298..382953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.57688	2.92008	1.89483	2.04572	5.78882	5.56114	3.30454	0.369418	2.77434	8.836	3.61119	2.19601	3.86551	0.885151	5.14659	4.87882	9.57254	3.99417	1.32118	3.09458	3.84714	4.13327	5.80392	9.57454	4.63837	0	6.98391	5.11468	7.23441	9.19949
Blast
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BLAST of TCONS_00012797 vs. Swiss-Prot (Human)
Match: WDR11 (WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.886e-32
Identity = 67/193 (34.72%), Postives = 118/193 (61.14%), Query Frame = -1 
Query:   38 RVFPTNRGPIKRLKFAPGKGNMRILMLFNDGVEIWDSVEIRSLANIKTSKD-GIAILDADWXXXXXXXXXXXXXSARVMDPVLTSANSNVQEKDLDQALFNPRLLEPAHSLKMKGVLQHQKWREQYKAK----EFSDSRE-ERAVQDSLDNMPEDICDRLENCPLGTAERCSKVARIYGDESDVLFWNVALHY 598
            R  PT+R  +++++FAPGKGN +++ ++NDG E+WD+ E++ ++++++ ++    ILD DW +S   +L   DG  RV++  + SA   + E++L + ++ P LL P  SL +K  L HQ W  QY       ++ ++ E +  +Q+ L+++  DI   L +      +RC  V+R+YGDES++ FW VA HY
Sbjct:  743 RGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAHY 935
The following BLAST results are available for this feature:
BLAST of TCONS_00012797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR113.886e-3234.72WD repeat-containing protein 11 OS=Homo sapiens GN... [more]
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