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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012798 ID=TCONS_00012798|Name=TCONS_00012798|organism=Clytia hemisphaerica|type=transcript|length=1164bp
AAAAAAGTGTCTGAAAATCGATTTGACGCATAAAAGCAGGAAAGTaaaac
gagaaaaaaatgtGCAGTAACAACTTCATGAAATTATTCTTGCTATTAAT
CTTCCAACAAATCTGTGCATTAGAAAGTATAAACTTTGAAAGTTTTCAAG
TAGACGAAGGAGAATGTAGCATGGGAGAACCAGGCATTGAAGTGAAATCG
ACTACTGAATGTCTATTGCATTGTGGGATGGAAAAATGCATGAATTCCTT
GATCAAAAACCAAACATGTTATTGTACTGATACGGAGTGTGTACCTCAAA
GGAAACAGCAAAGTCTTCACGAGGCCAATTTCTTTACGAgTCCGCTGCAG
AAAGTTACGATCGAACCCATATGTTACGGAACAAAAGGAAGTTCCTTCGC
TTCATTCAATGTTCCCCAAAGTGGACGCATCAAGTATTTCAAACTCATAC
ATGTATCTGGCTATGTGTCTTGCAGCAATGTAAATGGGAATAGCACATGG
GCTTGTAAGGTTATGGAGCCTTCAACAGTATTAACAGGAATTACAAACAC
CAATAACCAAATTATTGCTCCACCTGGCATTCACGATAATggtaaatttc
aaattcaaggtGTCAATCATATGAATGACAGAGAGTTGATTTTACCAGCA
AAATCGTCAATAGAAGTCAAAAAAAAGGAAGAGCTTAGAATTTGGTACAC
TGAAGATCTGGTAGATTATAAAGAACAAGACAATATTGGAACACACTGTA
TTCATGTCTTGCTCAAGTATTGCTGATTCGTTATTAGAAACgttaaaaat
gataatattttatttggtttaGTTTCTGGTATCAAGGATAACTTGACAAA
TATACGAAAGTCTATAGACTATCAACTATTcccattaaaaaatatttttt
atagtcCAACACGAGTCAAAGTATGGAAGATACCGGGATTGAAGTCCAAA
GGCTAGTTGAACCCATAAGGCCAAAAGAGATTCGAATATTACAGgaagtt
acacgtttttttataagaacaaactatataagaacgtaaggcttcgatgg
ccaaaatactaagaacaagtcaagaacgttttaaggcttcgcggactcta
aaacacccgatttcttaggaaagtggacaaaaatattcaaaaaacggtga
aaataagagcatgt Run BLAST on NCBI protein sequence of TCONS_00012798-protein >TCONS_00012798-protein ID=TCONS_00012798-protein|Name=TCONS_00012798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MCSNNFMKLFLLLIFQQICALESINFESFQVDEGECSMGEPGIEVKSTTE
CLLHCGMEKCMNSLIKNQTCYCTDTECVPQRKQQSLHEANFFTSPLQKVT
IEPICYGTKGSSFASFNVPQSGRIKYFKLIHVSGYVSCSNVNGNSTWACK
VMEPSTVLTGITNTNNQIIAPPGIHDNGKFQIQGVNHMNDRELILPAKSS
IEVKKKEELRIWYTEDLVDYKEQDNIGTHCIHVLLKYC Run BLAST on NCBI transcript from alignment at sc0000156:386870..392013+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012798 ID=TCONS_00012798|Name=TCONS_00012798|organism=Clytia hemisphaerica|type=transcript|length=5144bp|location=Sequence derived from alignment at sc0000156:386870..392013+ (Clytia hemisphaerica)
AAAAAAGTGTCTGAAAATCGATTTGACGCATAAAAGCAGGAAAGTaaaac
gagaaaaaaatgtGCAGTAACAACTTCATGAAATTATTCTTGCTATTAAT
CTTCCAACAAATCTGTGCATTAGAAAGTATAAACTTTGAAAGTTTTCAAG
TAGACGAAGGAGAATGTAGCATGGGAGAACCAGGCATTGAAGTGAAATCG
ACTACTGAATGTCTATTGCATTGTGGGATGGAAAAATGCATGAATTCCTT
GATCAAAAACCAAACATGTTATTGTACTGATACGGAGTGTGTACCTCAAA
GGAAACAGCAAAGTCTTCACGAGGCCAATTTCTTTACGAGTAAGTTGAAT
TATACTCTATACGAGACGTCACGGCTTTTTTTCTACGCAGTAGCAAAAAC
AGTTGGGTTTCGAACGTTTTAGGTCAAAAGAAGATACAGAGAGCtctaga
aaaaattgaaaattcgtaCAAACGCACTTGTAAAAGACCCTTTATAAAAG
CTAAACTTTATTCATCCAAAGTAGGGTGGACTAattaaaatcagtctttt
accctttGAAAAATTCCAGAAGAACATGGAAACCTCTCGGAAAAACCTAA
AGCCTGGGAATTTAAAACGTTTCCTCAAGACTGAatgaaagtttttctaa
aagaaaaccATCCTGAAATGTGCATCCGTCCCTATCAAAAGGTATTAAAT
TGAGCAGTCCTTTCTTAATAAAACTTACACCGAAGCTAGTAGAAACGCAG
CCACGAAAACGGTTTTGTTGGCTCGAGTTTACTTGACatgttacactttt
tttaaggtCTTCAAAAACTCACTATGGAACCAATATGCtacggtgcgaaa
gagaaatcattTGCCAGACTCCAAATTCGTGAAACTGGACgtatcaaata
tttcaaaatggtacACGTCTCGGGTGGAGTCACCTGCGCAGTCCAANGTG
AAACTGGACgtatcaaatatttcaaaatggtacACGTCTCGGGTGGAGTC
ACCTGTGCAGTCCAATTGGGTTACAGCAGATGGGGTTGCCCGGGAAGATC
AGCAGAATCTGTATACACGGCGATGACAGACGTATATAACCATGTCGTTG
CTCCACGCGGAACTCACAATCACggtatttttcaagttcaaggTGCTAAT
CATATGACTGATGACACGTTGACCTTGTTCTCGAATGCTTACGACGCGTT
CGAACAAGGCCAGGAAATAAGGGTGTGGTACACGGAAGATTTGTTTGAAT
ATTATGGTGACGATAATGGGGGAACACAATGTGTTCATATTTTCGCCAAG
TACTGCTAGAAAAATTAGAACCAAGATTGACAGGCATGGATCGTTTACTG
AAGCGttattgaaaagttaaaaagttaaaattgtcCGTAGCTGCGTTTTT
TCACTTCGTTTTACTATACAcgcctttttttataaaaatattgtaaaccc
atttcatcatgaatattcttaactttttggtcgaaatcatcctgaaatat
tcttacagtattcttagatTTAAGATGAAAAGCCTAAATCTAGCACGCAA
TATATACCTCAATCAAGAATTTCGGATTTTTGTGAAACTTCTTAGCATTG
CTTGGGAGTAAATGGCAATATACAGGCTATagaaatgacattcttagctt
caaTTACCTAATTCCAAATTTTACTGtcttagtttttttctttttggtat
tttccATACTCAAATTAGAATAAGCTCTATTTTGATACTTTAGCTCAAAC
GGGTAGAGTAACTTTGTTAATGTCGAGCTCTTAACGGTGATTATTAGAGA
ACAACACTAAATAGAGGAAAGACAAATTTCTTTGTTTGGTTAATTTTCTT
TTCGATTTCGAATTCTATGCTCCATCAAATTCTATCtaacttttaatttt
tgcaCTTGCAATCATGGACGAAATCATACATTTTAGTGATTATTAATTTT
GAGAATTAATAAaaggaataaaaatatttttctttttttctccgttgaag
taatttcatttgtttAGGGTCTCAAATTTAGTGCAAGGATTACACATTTG
CTTTATTCTGTATGTATATAATTCTAGTATGTAACCTGTATAAATAtgaa
ttataataaaaataatcatcagATACCTATTTATATAAATTTTGTTATTA
GCGATTTTTGTTCAGATAGCTTActttcactgacctttatatatccctgg
agcaagctatatccaccatctttgaacgaagttttttttgaattggttcC
CGTAAAGAAGTCTCTAACTGCGCTACATCATCGAAggttttcgagggaaa
gtagatatggcgctctcgatgcatttacaccgctattgagtagtgccacc
attagggtaccactttaaaaaaaaaactccgatcaaagattttgcttggc
cgggattgagaaacttgttCTAGGGTATATATAGGTCATCAGTGCTTACT
TTAAACTTTACAAATGATgatgtaatcaaatttttagcGAAGAGTGTTTC
ATAGGCTATGATTTCTTTGCCTgccaaaaaatatgaaattaaaTTAAGAA
AATATCGTATAAGCATGCGAAAATCTCGACAAAATAATATGGAGCTGAAG
TTTaaatagtgtggtcgtgttaaaATTATTATAATAGAGGCTgtttgtag
ggaaaaaataatgtAAGTAAAAAATAATGTAATGTATATGTAAAAGTAAT
GTATTATGTAGTTCTATATAAGATACTTCTGCCTCATGAAataatcccct
aaaatcccagtGGCGGAACATatcatttttggtcaatttctttTCCTCTA
GCAAGATCCTACTAAGAATTATAGTTTGTGAAAATTTCATGCTCGTTTTC
AGGCATAGGCAAAATAGGGATATCCCATTAGTGCGATTTTCAAGGGATTT
TTTACTGGTAGCATTCTATTCAAAAGGTTTATTAAAGGTTTTCGTTctaa
attacacgttttttataagaacatccaaaatttttggagGCTTCGGATGT
CCTTTATTTTTAATgagttttaaggctaaaaatgttctgaacatgttctt
attttctctactttctgagtatttttgttcgttttccaaagaaattaggt
gttttaaagtctgcgaggccttaaaatgttcttaaattgttcttaatttt
tttggccatcgaagccttatgttcttatgtagtttgttcttgtatAAAAA
AAGAACNaacatccgaaggcttcaaaaattttggatgttcttataaagaa
aatgtgtagaatatttaaatatttaacAAGCAAAAATAATTAGTCCAGTC
CTGTCAAACATGATTCCAGACATTTTGTATTTATACGGTTTCACGAAAAA
AGTGTCTGAAAATCGATTTGACGCATAAAAGCAGGAAAGTaaaacgagaa
aaaaatgtGCAGTAACAACTTCATGAAATTATTCTTGCTATTAATCTTCC
AACAAATCTGTGCATTAGAAAGTATAAACTTTGAAAGTTTTCAAGTAGAC
GAAGGAGAATGTAGCATGGAAGAACCAGGCATTGAAGTGAAATCGACTAC
TGAATGTCTATTGCATTGTGGGATGGAAAAATGCATGAATTCCTTGATCA
AAAACCAAACATGTTATTGTACTGATACGGAGTGTGTACCTCAAAGAAAA
CAGCAAAGTCTTCACGATGCCAATTTCTTTACGAGTAAGTTAAAACTATA
ATGTAAAAAGTCTgtttcaatataatctgcagcagagacaaaaaaggctg
tagcttttgatagaattcgtaGCGGTATATTGTGCTTGTTGAAGAAATAT
TAAATAGTTGAATATTacttaataaaaataaataaaaatgaaaaatcaac
ttCGCGAAGAATTATATATTTTGACACATACTTTAGTGAATCTTTGTACT
GAGCACAATGAATTTAATCCCTTTTGTTCATTAGCACTCAACGCAAATTT
ATAAAGATCAGTTTGTGTATTAAATTTGTTGAAACAAGCCAAAAAACTat
caaaagattttccaaaatagtTAGAGGTCCGGTGAAGAAAGCATCAGTTC
GAAAGCCAAAAACCGCATTCTTTTCTATAGACCTTATTggagttttagat
ttttctaaaaaagcgatgcattgtggggtTGTTTCTAGTGccttacaata
gaaatctcttcggaattcctcgagggaattttATTATAATACACTCACAA
CAATCCCACAACGCATcgcatttttagaaaaatcaaaaattccgaTAAGC
TCTATTGCAATCAACATGTTTAAAAACAAGCTagaagacaaaaataaaat
ttttcaaaatcttttaaaggTCCGCTGCAGAAAGTTACGATCGAACCCAT
ATGTTACGGAACAAAAGGAAGTTCCTTCGCTTCATTCAATGTTCCCCAAA
GTGGACGCATCAAGTATTTCAAACTCATACATGTATCTGGCTATGTGTCT
TGCAGCAATGTAAATGGGAATAGCACATGGGCTTGTAAGGTTATGGAGCC
TTCAACAGTATTAACAGGAATTACAAACACCAATAACCAAATTATTGCTC
CACCTGGCATTCACGATAATggtaaatttcaaattcaaggtGTCAATCAT
ATGAATGACAGAGAGTTGATTTTACCAGCAAAATCGTCAATAGAAGTCAA
AAAAAAGGAAGAGCTTAGAATTTGGTACACTGAAGATCTGGTAGATTATA
AAGAACAAGACAATATTGGAACACACTGTATTCATGTCTTGCTCAAGTAT
TGCTGATTCGTTATTAGAAACgttaaaaatgataatattttatttggttt
aGTTTCTGGTATCAAGGATAACTTGACAAATATACGAAAGTCTATAGACT
ATCAACTATTcccattaaaaaatattttttatagtcCAACACGAGTCAAA
GTATGGAAGATACCGGGATTGAAGTCCAAAGGCTAGTTGAACCCATAAGG
CCAAAAGAGATTCGAATATTACAGgaagttacacgtttttttataagaac
aaactatataagaacgtaaggcttcgatggccaaaatactaagaacaagt
caagaacgttttaaggcttcgcggactctaaaacacccgatttcttagga
aagtggacaaaaatattcaaaaaacggtgaaaataagagcatgt Coding sequence (CDS) from alignment at sc0000156:386870..392013+ >TCONS_00012798 ID=TCONS_00012798|Name=TCONS_00012798|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at sc0000156:386870..392013+ (Clytia hemisphaerica)
atgtGCAGTAACAACTTCATGAAATTATTCTTGCTATTAATCTTCCAACA
AATCTGTGCATTAGAAAGTATAAACTTTGAAAGTTTTCAAGTAGACGAAG
GAGAATGTAGCATGGGAGAACCAGGCATTGAAGTGAAATCGACTACTGAA
TGTCTATTGCATTGTGGGATGGAAAAATGCATGAATTCCTTGATCAAAAA
CCAAACATGTTATTGTACTGATACGGAGTGTGTACCTCAAAGGAAACAGC
AAAGTCTTCACGAGGCCAATTTCTTTACGAgTCCGCTGCAGAAAGTTACG
ATCGAACCCATATGTTACGGAACAAAAGGAAGTTCCTTCGCTTCATTCAA
TGTTCCCCAAAGTGGACGCATCAAGTATTTCAAACTCATACATGTATCTG
GCTATGTGTCTTGCAGCAATGTAAATGGGAATAGCACATGGGCTTGTAAG
GTTATGGAGCCTTCAACAGTATTAACAGGAATTACAAACACCAATAACCA
AATTATTGCTCCACCTGGCATTCACGATAATggtaaatttcaaattcaag
gtGTCAATCATATGAATGACAGAGAGTTGATTTTACCAGCAAAATCGTCA
ATAGAAGTCAAAAAAAAGGAAGAGCTTAGAATTTGGTACACTGAAGATCT
GGTAGATTATAAAGAACAAGACAATATTGGAACACACTGTATTCATGTCT
TGCTCAAGTATTGCTGAatgtGCAGTAACAACTTCATGAAATTATTCTTG
CTATTAATCTTCCAACAAATCTGTGCATTAGAAAGTATAAACTTTGAAAG
TTTTCAAGTAGACGAAGGAGAATGTAGCATGGGAGAACCAGGCATTGAAG
TGAAATCGACTACTGAATGTCTATTGCATTGTGGGATGGAAAAATGCATG
AATTCCTTGATCAAAAACCAAACATGTTATTGTACTGATACGGAGTGTGT
ACCTCAAAGGAAACAGCAAAGTCTTCACGAGGCCAATTTCTTTACGAgTC
CGCTGCAGAAAGTTACGATCGAACCCATATGTTACGGAACAAAAGGAAGT
TCCTTCGCTTCATTCAATGTTCCCCAAAGTGGACGCATCAAGTATTTCAA
ACTCATACATGTATCTGGCTATGTGTCTTGCAGCAATGTAAATGGGAATA
GCACATGGGCTTGTAAGGTTATGGAGCCTTCAACAGTATTAACAGGAATT
ACAAACACCAATAACCAAATTATTGCTCCACCTGGCATTCACGATAATgg
taaatttcaaattcaaggtGTCAATCATATGAATGACAGAGAGTTGATTT
TACCAGCAAAATCGTCAATAGAAGTCAAAAAAAAGGAAGAGCTTAGAATT
TGGTACACTGAAGATCTGGTAGATTATAAAGAACAAGACAATATTGGAAC
ACACTGTATTCATGTCTTGCTCAAGTATTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012798-exon-sc0000156-1491911889:386870..387208 | TCONS_00012798-exon-sc0000156-1491911889:386870..387208 | Clytia hemisphaerica | exon |
| TCONS_00012798-exon-sc0000156-1510915933:386870..387208 | TCONS_00012798-exon-sc0000156-1510915933:386870..387208 | Clytia hemisphaerica | exon |
| TCONS_00012798-exon-sc0000156-1575043694:386870..387208 | TCONS_00012798-exon-sc0000156-1575043694:386870..387208 | Clytia hemisphaerica | exon |
| TCONS_00012798-exon-sc0000156-1491911889:391189..392013 | TCONS_00012798-exon-sc0000156-1491911889:391189..392013 | Clytia hemisphaerica | exon |
| TCONS_00012798-exon-sc0000156-1510915933:391189..392013 | TCONS_00012798-exon-sc0000156-1510915933:391189..392013 | Clytia hemisphaerica | exon |
| TCONS_00012798-exon-sc0000156-1575043694:391189..392013 | TCONS_00012798-exon-sc0000156-1575043694:391189..392013 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:386870..392013 + |
Blast
The following BLAST results are available for this feature:
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