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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012800 ID=TCONS_00012800|Name=TCONS_00012800|organism=Clytia hemisphaerica|type=transcript|length=458bp
caaaaacaaaaaacatggCGGACGACAACACGATTAAAGATGACCAAGAC
ATTTGAGTTTTAGAGaagtttttatacattttttacaGCTGTTTTTTATT
CCCTCTGAATTTGTACCAAGTCAAAATGTCTGTCGAGAACCCCAAAGACA
AAGATGCCAAACCAGCGATcgaagaaaatgcttttgaggTATTAGAAAAA
GACTTCCAAGAGGTCCTCAATGAACTAACGGGTGATAAAAGTTTAGAGAA
ATTTCGTGTAGAATATGAAAAATTGCATAGAGCACTAAAGAAATCGCATG
AAAGTGAGAAAAGGTTGATGGGAAAATGTCGAGAATTGAATTCAGAGATT
GTTGCCAATGCAGCCAAAGTTGGAACTGCTTTAAAACTCTCACAAGAAGA
TCAAACTACTATTTCGTCACTAAAAAAGGAAATCGAGAAAGCTTGGAAGA
TGGTTGAC Run BLAST on NCBI transcript from alignment at sc0000156:415966..420001+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012800 ID=TCONS_00012800|Name=TCONS_00012800|organism=Clytia hemisphaerica|type=transcript|length=4036bp|location=Sequence derived from alignment at sc0000156:415966..420001+ (Clytia hemisphaerica)
caaaaacaaaaaacatggCGGACGACAACACGATTAAAGATGACCAAGAC
ATTTGAGTTTTAGAGaagtttttatacattttttacaGCTGTTTTTTATT
CCCTCTGAATTTGTACCAAGTCAAAATGTCTGTCGAGGTAGGTACTggtt
tatttattaatttattgaatttttcatGGAAAAGTCTATTGATGTCAGTC
AGTGAAGAAAATTCTTGCTGGCTGGAGGGTcactttttacaattttgttt
taaaaacacaaaattagATTGAAGAGAGAAAACGATAAGAGCAGATTGAT
GAGAGCAGAATGAAGGACGAAGAGTGTAGGGAGAGAAAAATGGAGAAGAA
CGATGATGAAGGGACTGAAAGTGAAGAAAGAATAGAGTAGAGGCAGGCCG
GCAGACTAAAAGAATGAAGTAAGGTAAGAAGAGAGGAGAATGAAGGGAGA
AGAAAAAACCTAATAGAGAGAGTAATGATGAACAGTTAGTGAAAGTACTT
CGATTTGTGAagctatttctatttctataaaTTAGGCAGGCATCAAAAAA
ATGTTCTGTTCGCGTCaccacgtgcgtttgcgtactgtagggtaaaatgg
cgaaatgcgaaaatcgaatttttgaaaaatgaccctacaagatttgacta
tatctttttattccattaagagattactttcaaataaaaaatgtattaac
aatgattgggtaagctttctagaaatccaaacataaattgcatagctttt
accaaaaaataacaCTTtgggatcagaaacagtcaaaaaccaactttttc
caattttcttcaagttacaggaattaataattctttgtttgttttgatct
gaaattttcagtaggggtggccaacatggttcccttgctcatatcagggg
ggcgagaccattgagtttcaagcccgaagggctagaggtcaatctctaac
ctttctcagacaagaaaaattgaaaccttaaaatatgcgccgtatttttt
atgacggattgaatctagtaattcctttgttttcgagtgatatatttttc
gaaattaagcggtaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaccaggcgggtcgctcaagac
cgcgcaactttggtaggatttgttggcttcaaatcctaccaaagagattg
acctctagcccttcgggcttgaaactcaatgggcgagacgggggtaagag
aattaaagtttctaagtaaaatctttaattatcacccaaaaaagtgcctt
ttttgtccatatcttttaaatagattgtcccagccttatccctccctcct
cggaaattttttcaattcacgcattcacgcacttttttccaattttcacg
cattcacgcaaattaaaattcccattcacgcattcacataaaccgctggg
ggggggccaTTAGATTGAAGAGAGAAGAGTGAAGATTGCAGAATAAAGAA
AGAATATCAAAGAGAGAAGAAAGAAGAGAGAAGATTGCAGAATGAAGAGA
GAATATCAAAGAGAGAAGAATTAAAGTGAAGATTGAAGAGAGAAGAATGA
AAAGAGAAGATTGAAGAGAGAAGAGAGAAGAGTGAAGATTGAAGAACAAa
gagagaaaaatgaaaagagaaaaattattAGTGAAGATTGAAGAGAGAAG
ATTGAAGAAAGAATATCAAAGAGAGAAGAATGAAGAGAGAAGAGAGAAGA
GTGAATATCAAAGAGAGAAGAATgataagtaaaatcttaattatcaccca
aaaaagtgcctttttttgtccatatcttttaaatagattgtcccagcctt
atccctccttcaATAAATAATATcgctttacaggtttgcaggccaccgtg
aagacacatgggcctctataaaccgctcgtactttttacaatgatctttt
tgaaatagagttttttttgcGGGCTCCCccggaaattttttcaattcacg
catttttttccaattttcactcaaatgaaaatgcccattcatgcattcac
gcaaaccgctgggggggggcatTAGATTGAAGAGAGAAGAGTGAAGATTC
CAGAATGAAGAAAGAATATAAAAGAGAGAAGAATGAAAGGAGAAGATTGC
AGAATGAAGAGAGAATATCAAAGAGAGAAGAATGAAAAGAGAAGAATGAA
GAGAGAAGAGAGAAGATTGAAGAACAAAGAGAGAAgaatgaaaagagaaa
aatttttaaagtgaAGATTAAAGAGAGAAGATCGAAGAAAGAATATCAAA
GAGAGAAGAATGAAGAGAGAATATCAAAGAGAGAAgaatgaaaagagaaa
aatgaagagagaaaaatgaaaagagaagaatgaaaagagaaaaatgaaga
gagaaaaatgaaaagagaaGAATTAAAGTGAAGATTGAAGAGAGAAGATT
GAAGAGAGAAGAGTGAAGATTGAAGAACAAAGAGATAAgaatgaaaagag
aaaaattattaaagtgAAGAATTAAAGTGAAGAGTGAAGATTGAAGAACA
AagagagaaaaatgaaaagagaaGAGAGAAGAATGAAGAGAGAAGAGAGA
AGAGAGAAGAGTGAAGAGAGAATATCAAAGAGAGAAGAATGAAAAGAGAA
gaatgaaaagagaaaaatgaaaagagaaGAATTAAAGTGAAGATTGAAAA
GAGAAGATTGAAGAGAGAAGAGAGAAgaatgaaaagagaaaaattaaaGT
GAAGATGATGAAAAGAGAAGAACTTTAAAGTGAAGATTGAAGAGGAgaga
atgaaaatgaagatagAGGATAGAAGATAGAAGAACgaatgaaaaagaga
aaaaaagagaacaattaaGAGAGAAGAACGAAGAGAGAAGAATCAAAATG
GAAGAGCGAAGAGAGAAGGAAGAATAACGGAGGTAGAAGATACTACTAAA
GTGAAGAGAGAAGCAAGAAGAGTAAGAGTGAAGAATGAAGAGAGAAGAGC
TTTTGGGAATGATGTTCTTATTATTGATAACTATCGTTTTAGAACCCCAA
AGACAAAGATGCCAAACCAGCGATcgaagaaaatgcttttgaggTATTAG
AAAAAGACTTCCAAGAGGTATGaaacttttttctacaattCAAAAGTACT
AAATGTTTTTTCTAGTTTTAAGGATGTACTTTATCTGAGATATATTTTCC
TAATGTTGAGAGGAAATGTATACAGATACACAGATGCATTTTTTCATAGT
GTGTTTTTCTCTTCTAGGTCCTCAATGAACTAACGGGTGATAAAAGTTTA
GAGAAATTTCGTGTAGAATATGAAAAATTGCATAGAGCACTAAAGAAATC
GCATGAAAGTGAGAAAAGGTTGATGGGAAAATGTCGAGAATTGAATTCAG
AGATTGTTGCCAATGCAGCCAAAGTTGGAACTGCTTTAAAACTCTCACAA
GAAGATCAAACTACTATTTCGTCACTAAAAAAGGTAAATCTTTTCTAATT
ctttaaattttgcaaattgaCTTGGCCTTGTCGGTCCTTCAATCTTATTG
ACAAACATAAATTCATGAAGTTAGTCGATCTGTCGTTAAGTCGGGGAATG
CTGTTTCATACCGTAATTCCTCAGATGAGCATGAGCAATTATAAAAGGGT
ATATCcaaggaaatattttcaaagtccTCTGGGATCAAGTTTTAAAACAC
GTGCAGCAAAATGATATAGACTCTTTTTGATAGCTTTCTTAACTTTGAAA
GGATCAATACGTCAAGATATGATTAGTAAGCGTAGACGCAATTCTTTAGG
TAGGGGGTTGCGctttttttaagtttatgaTTTTAGGTGCGATGAACAGT
GCTATGGGGCGGCCCTCATTGGAGTTTCAAACTCACTTTTGCTTTCTTAA
CCTTAGGAAATCGAGAAAGCTTGGAAGATGGTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012800-exon-sc0000156-1491911889:415966..416102 | TCONS_00012800-exon-sc0000156-1491911889:415966..416102 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1510915933:415966..416102 | TCONS_00012800-exon-sc0000156-1510915933:415966..416102 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1575043694:415966..416102 | TCONS_00012800-exon-sc0000156-1575043694:415966..416102 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1491911889:419108..419182 | TCONS_00012800-exon-sc0000156-1491911889:419108..419182 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1510915933:419108..419182 | TCONS_00012800-exon-sc0000156-1510915933:419108..419182 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1575043694:419108..419182 | TCONS_00012800-exon-sc0000156-1575043694:419108..419182 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1491911889:419333..419548 | TCONS_00012800-exon-sc0000156-1491911889:419333..419548 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1510915933:419333..419548 | TCONS_00012800-exon-sc0000156-1510915933:419333..419548 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1575043694:419333..419548 | TCONS_00012800-exon-sc0000156-1575043694:419333..419548 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1491911889:419972..420001 | TCONS_00012800-exon-sc0000156-1491911889:419972..420001 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1510915933:419972..420001 | TCONS_00012800-exon-sc0000156-1510915933:419972..420001 | Clytia hemisphaerica | exon |
| TCONS_00012800-exon-sc0000156-1575043694:419972..420001 | TCONS_00012800-exon-sc0000156-1575043694:419972..420001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:415966..420001 + |
Blast
BLAST of TCONS_00012800 vs. Swiss-Prot (Human)
Match: CFA58 (Cilia- and flagella-associated protein 58 OS=Homo sapiens GN=CFAP58 PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.671e-46 Identity = 76/104 (73.08%), Postives = 93/104 (89.42%), Query Frame = 3
Query: 147 DKDAKPAIEENAFEVLEKDFQEVLNELTGDKSLEKFRVEYEKLHRALKKSHESEKRLMGKCRELNSEIVANAAKVGTALKLSQEDQTTISSLKKEIEKAWKMVD 458
+K K +EE+AFE +E+DFQ VL+EL+GDKSLEKFR+EYE+LH +KKS+++EKRLM KCRELN+EIV N+AKV TALKLSQ+DQTTI+SLKKEIEKAWKMVD
Sbjct: 4 EKGGKQVLEESAFEEMERDFQGVLHELSGDKSLEKFRIEYERLHAVMKKSYDNEKRLMAKCRELNAEIVVNSAKVATALKLSQDDQTTIASLKKEIEKAWKMVD 107
The following BLAST results are available for this feature:
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