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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012802 ID=TCONS_00012802|Name=TCONS_00012802|organism=Clytia hemisphaerica|type=transcript|length=2224bpRun BLAST on NCBI protein sequence of TCONS_00012802-protein >TCONS_00012802-protein ID=TCONS_00012802-protein|Name=TCONS_00012802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp MASQPPSKKQKTELSNPLTKKQVFGGLNVCIIEQGLGKTRCNIFTDQLKKRun BLAST on NCBI transcript from alignment at sc0000156:469574..483841+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012802 ID=TCONS_00012802|Name=TCONS_00012802|organism=Clytia hemisphaerica|type=transcript|length=14268bp|location=Sequence derived from alignment at sc0000156:469574..483841+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:469574..483841+ >TCONS_00012802 ID=TCONS_00012802|Name=TCONS_00012802|organism=Clytia hemisphaerica|type=CDS|length=23067bp|location=Sequence derived from alignment at sc0000156:469574..483841+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012802 vs. Swiss-Prot (Human)
Match: DPOLL (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1) HSP 1 Score: 362.073 bits (928), Expect = 9.219e-115 Identity = 213/533 (39.96%), Postives = 306/533 (57.41%), Query Frame = 2
Query: 131 LNVCIIEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFV-DRNNEKRDPSKQGND-SLNTKDEEDLTVRALPXXXXXXXXXLKPRTSYEELLALRNRKDLDSSPDEEEERTS------------PSDSKKDFTKVKSELPKGTWVCAKPSSSTNQKVNHNKHITEKLEVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHIDEKSELINKFXXXXXXXXXXXXXXXXXXFESLEDLEKNADLTFQQKIGIKHYDDINQKMPREEVTEIEQHIRKIAEDVLPGIHMEICGSYRRGRSHCGDIDVLFSHPNDELRKSFLRAVLEKLKETNLITDDLICV-NSEEQRKYMGVCRLPRENAKFRRIDFIVAPFNEWPLALMHFTGSAHFNRSIRLLAKKKNMSLSEHALRKDVIR-VGGEKVNKGTSISISSEKDIFEYFGLDYLKPTDRD 1681
L ++ G+G+ R +F Q+ +HG + + + +++V + M ER ++L+ Q+ +V WLS L +L ++ + F+ R + PSK D S+ E L AL + V P+ + E D + D EE + S P+ + D + WVCA+PSS + NHN HITEKLEVL K Y DKWRA+GY KAIN++K++ K ++S++E S+P +G R+AEKI EI+E+GHLR+LDHI E ++ F+ +WGAG A W QGF SLED+ A LT QQ IG+KHY D ++MPREE TEIEQ ++K A+ G+ CGSYRRG++ CGD+DVL +HP+ + +L+ L++ +TDDL+ + +Q+KY+GVCRLP + RR+D IV P++E+ AL++FTGSAHFNRS+R LAK K MSLSEHAL V+R G KV G + +EKD+F GL Y +P +RD
Sbjct: 44 LRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFIPSRYLDHPQPSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSS--QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574 The following BLAST results are available for this feature:
BLAST of TCONS_00012802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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