TCONS_00012805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012805
Unique NameTCONS_00012805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012805 ID=TCONS_00012805|Name=TCONS_00012805|organism=Clytia hemisphaerica|type=transcript|length=809bp
AAGAAGTTGTCTATTAAGAGAACGAAAAGAAATTAACCATGAAGGTTTTC
ATCCTCCTTGCTATCATCGCTGCATCACATGCTTTGGAAGTCACCAAAGT
GACTGGAACAACACCGCCAGCTGTCCCATGCCCAGACTCTTTGTGCAAAG
GAAAAGCTGACGGAAACTTCGAATACTACTACTATGGTCAATACAGACGT
AACTACTTTGTCCAATGCTCCAACGGATTAGCCTACTGTCAACCATGCTT
TCCTCTCTCTTTGGAATTCAGCGAAACATGCAATCAATGTCTTTACAGTA
AACATGATAAATGCGTCACCACCGAAGCATGGGAACCAGCCACCACATTC
GAATGTCCAGACAAATGCCCACACCGTGGACCACACTTCAATGGAAACAT
TGCTGACCCCAACAACCCACATCAATANCAGAAGCATGGGAACCAGCCAC
CACCTTCGAATGTCCAGACAAATGCCCACACCGTGGACCACACTTCAATG
GAAACATTGCTGACCCCAACAACCCACATCAATATGTTGCTTGTTGGCAT
GGAGCAACTGTCGGATGCATCGCTTGTCCAAAAGGATTATTGTTCAACGA
GAAATGGAACGCCTGTTTGTTTGATGGCAAATACAAGACCGAACCAGAAC
AAAGAAATCCATACGACAGATTTTATTAACTTCGACGTTCTTGGTCACcc
aacaaaaacgaaaaaaaacgaaaactgtaaatgaaaataatttttcaaac
tgatttttaataaactttgttttttagttttttatgtGCTTATTTGATCA
ACTTTTATC
Run BLAST on NCBI

transcript from alignment at sc0000156:482763..483841+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012805 ID=TCONS_00012805|Name=TCONS_00012805|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at sc0000156:482763..483841+ (Clytia hemisphaerica)
AAGAAGTTGTCTATTAAGAGAACGAAAAGAAATTAACCATGAAGGTTTTC
ATCCTCCTTGCTATCATCGCTGGTAagttaacaatttttttaaatgtgag
ctgaaatatcaaaacaaaagtctATCCATGTGATCAGCctaatttatttt
ctttaaatcttttCTGTTTCGACCATTTAGCATCACATGCTTTGGAAGTC
ACCAAAGTGACTGGAACAACACCGCCAGCTGTCCCATGCCCAGACTCTTT
GTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACTACTATGGTCAAT
ACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCCTACTGTCAA
CCATGCTTTCCTCTCTCTTTGGAATTCAGCGAAACATGCAATCAATGTCT
TTACAGTAAACATGGTGAGAATCTCCTCAATCTCGTTTTCATCaaatatt
tatttacttttttaaagaGATGGAAAATACTCAAATCTTATTCTGAAATC
TAGCTttatcaagaaaaaaatatcagcCAAATCTTTGGTTATGTATCACA
TTTCTACATATTCTCTCCCTTTTCAGATAAATGCGTCACCACCGAAGCAT
GGGAACCAGCCACCACATTCGAATGTCCAGACAAATGCCCACACCGTGGA
CCACACTTCAATGGAAACATTGCTGACCCCAACAACCCACATCAATANCA
GAAGCATGGGAACCAGCCACCACCTTCGAATGTCCAGACAAATGCCCACA
CCGTGGACCACACTTCAATGGAAACATTGCTGACCCCAACAACCCACATC
AATATGTTGCTTGTTGGCATGGAGCAACTGTCGGATGCATCGCTTGTCCA
AAAGGATTATTGTTCAACGAGAAATGGAACGCCTGTTTGTTTGATGGCAA
ATACAAGACCGAACCAGAACAAAGAAATCCATACGACAGATTTTATTAAC
TTCGACGTTCTTGGTCACccaacaaaaacgaaaaaaaacgaaaactgtaa
atgaaaataatttttcaaactgatttttaataaactttgttttttagttt
tttatgtGCTTATTTGATCAACTTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007187XLOC_007187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012805-exon-sc0000156-1491911889:482763..482834TCONS_00012805-exon-sc0000156-1491911889:482763..482834Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1510915933:482763..482834TCONS_00012805-exon-sc0000156-1510915933:482763..482834Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1575043694:482763..482834TCONS_00012805-exon-sc0000156-1575043694:482763..482834Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1491911889:482943..483176TCONS_00012805-exon-sc0000156-1491911889:482943..483176Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1510915933:482943..483176TCONS_00012805-exon-sc0000156-1510915933:482943..483176Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1575043694:482943..483176TCONS_00012805-exon-sc0000156-1575043694:482943..483176Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1491911889:483339..483841TCONS_00012805-exon-sc0000156-1491911889:483339..483841Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1510915933:483339..483841TCONS_00012805-exon-sc0000156-1510915933:483339..483841Clytia hemisphaericaexon
TCONS_00012805-exon-sc0000156-1575043694:483339..483841TCONS_00012805-exon-sc0000156-1575043694:483339..483841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:482763..483841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0747106	0	0	0	0.373011	0.324292	0.199525	0.376238	0.0533758	0.275879	0.138925	0.317235	0.0892957	4.26045	1.26587	0.390246	0.0477593	0	0.320873	0.133979	0	0	0.0700393	0	0.138929	0.0681366	0.218597	0	0.0661198	0.0699406
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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