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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012811 ID=TCONS_00012811|Name=TCONS_00012811|organism=Clytia hemisphaerica|type=transcript|length=3659bp
TCCGCCAacatttcttcccttaaggtattttcCTTTGAACTTCGCCATGA
AAGTTTTTATTATTCTTTTCGCCAGCTCCCTTCAAAAACATATTCAGTGC
TCCGACGCTGAACCTTGCTGTTTAAACTTAGCTTTTTAATATCAATGTCA
TGTTAGTTAAAAGGAACTTTAAGGTTTAGCACTTCAAAATCTTACAACAC
CAACTAAAAGGGAACGGAATAAACGGTAACTTGGCTTCTCCGAAAACAAG
GAAGAACTTGTCTTTCTAAAGTAAAAAACAAACTCAAGAATTCATTCTAT
TTCCATTTTAGATTTGAGACCAGGACTCTCAGCAAGGGAGATTTACGTTT
CTTTAAACAAACAAAGCGATGATATTTCCACGTGTGGAACGAAGTGGCAA
CCGTGTCGAACCATCAAATTCACCATCAAGAATATCTCAAAGGCTTTGGA
TACCATTCTATTAGATTCTGGTTACACTTTCTATCCTGACCAGTCCATCG
AGATCGACAAGGAGCTCAACATAACCTCTTACAATGGAAATCATACAGGA
CATGAGAGGGCTTCCATTCTATTCCGTGAAAATTTCAATGAAGGATTCAT
GATAAGAGATAGTACTAgtattcaaaatcttgatgTAACGTGGAGGTTTA
CCTCaatcattttcaatcttcaagCGGGAAAATTTTTCACAGTAGAAAGC
TGCTTGATTATCATAAGTTCATATCTGCTCATAACGGGGTGGAGAGATAt
ggaaaaagttactttcgaaaaagttaaaTTCAGTAACGTTACTTTTAAAG
GTTCTTTTTCGAATCCACAAGTGAAAAAGACGAATAGGCAAAACAACTCG
GCTACCAAGAGAAGCTCTCATAAAGAAAATTTATCCACCCCTTCGCTTAG
ATCAATAAATATAAACTACACCAATTGTCGGTTTCTAAACACTTTATTAA
TGATCTCAGCTCCCTTGTCAAGTTCGAATAGGCCTAATTTAACAATTTCG
GAGTGTCACTTTGAACATGCTGATACGAGGTTTCCTGCTATTAATAACAC
AGTTATTTACTTCGCCAGCAATCTTGTGCGTAAATCATATATGGGGTGGA
TGTATATCGGAAACATTTATGTAGAGAATTGTCATTTCCTCGAATCTTAT
GAACCCAGTGTTATTCTAGACGTAGTATTTTTTGATGGTCCATATGAGCT
AAATATTGACAATTGTACATTCGAGAATACTACGTATGGCGCTGTTCACG
TTGAGAATGGTGATATCACGATCAATAATTCTCGTTTTATGAACAACATT
TTTATTCCGATCAAACGATTTTCGGGCACGGTATACGCACCATCATTATC
AGTAACAACAGACAGCCTGACAATCATGAATAGTGAGTTCATAAATAATA
CCGCTCCTAGCAACCTAGGTGCGTCAGTGCaagcaaaaaatatatatgat
gAAAATGGTAGAAAcgttaaaatttccattttaaatACTACTATCATATC
AGGAAAATACCCAGTGTCGAGCGATGACACACCAATAAGTATTCAGATCG
CTGGTTATATTACACCAGCATTTCTATTTGATGAAACTTCAATAGTAAAA
TGTTCGACAGGACAGTACCTCCGATACTATCGAGTAGAGGGTAGCATTGG
ACTAACAGTACATTGCATCACTTGTAATACATCTTCATATAACGCAAAAG
ATATATCATTTTTAAAGGCCAAAGGTGGAATTTCCGATCTTCAGTTCTAC
TCACGTGATATTACTTGTTTCAAATGTCCGTACGAAGCTTTGTGTTATGA
TGGCGCTATTCGCAGTAAAGGCAACTACTGGGGATTATCTGATAACTCTG
GCAAAGTGACATTCTATCCTTGTCCACCATTGTATTGTTGCTCGTCCTTG
GAAGGGTGTGGATCATACAACACTTGTGCTAAGAATCGTGTTGGTACACT
TTGTGGTGATTGCCAGGAAGGACatgttttatcatttttcaatcACAATG
AATGCATCGATAAATCATTATGTGAATATTCGTGGACAGTTTGGTGCGGA
TATATCCTTGCTGTCGCTATcttgtgtttattttttttgtacaatgaGGA
CGTTTGGCGATTCTTTAGATCAAAAACAGCTCAAGACCACAACAAACAGA
ATGTGGAAGATCTTGATGAAATTTACGAAAACGATACTCAAACTCCCTTA
TTGAGACAAAAGCCGATGGAAAATTCTTCATCAAAGCAACTGACTGGTGT
CATTaaaatcacatttttcttcTACCAATCAGCATCGATCATCCGTATTT
TAGCCTCTGCGAAAACGTACTATAACATGCCgaacattttgacctttttg
gtATCCTTTTTCGACATCAGGTTGGAGATCACAAGTGatgtattgaaagt
ttgtccACTCTTTACATCGAACTTTCTGGTAATAGATGCTTTTAAATCCA
GTTTACCGATAACATGTCTAGCAGCTCTGTTGCTCATGATGTTAGCCTGC
GTAATGACCAGAATCTATTATACTAAAAGGAGATCTGATAATGAAGTAGA
CTTTGGAAAATCGTTTTTACGCCGTTTGAAAGGAGCTTATGTAAACATTC
TATTGCTCGGCTATTCCAGCATCTCGATCTTTTGTTTACGGGGTATCCAT
TGCATTGATATTGATGGAGAAGAGCGCCTCAATGCCCAAGCTTCCGTGAA
ATGTTACACCGGTTGGCAATACCTCATCATGGTCGTGATTGGCTTATGGG
TTATTCCTTTCCCACTCGTCTTATACGCTGCTTGCCGGGCGCTCCGCTCA
TATCGTATTTCAACGAACGAGTTCCTTCTGGTCCTTACTTTACCACCGTC
GTCCGTCTACTACATGTGGTTGAGATCACGCATCTTCACTCAATATCATT
TTATCTTTGACCAACAAACCATTCAAGAGAAAGACCGAATCTTAGAAGTC
TTGAACGGTCCCTTCAAAGTCAACTCGAAAAATGAAGAATGTCGTTTAAT
TTGGGAGCCAGTATTAATATACCGTCGATTACTACTGATCGTTGTCACAA
CCTTTATAACATCGCCTGTCGTTAAATTATATCCAGTCGGTTTGGCGTTC
TTTGTATTTGTGGTGCACGATTCGTTGGAGAAACCATACGCTGACTCAAA
ACTTAATTTCATCCAAATGGTTTCACATTTGATCCTTTGTCTTTTGACAA
TGTTTAATATGTTCTGGGCACTGACCAATAATGTTGATGTACTGCAGAAT
CAAATGTTCTACATTCTCGGTGAAGTGCTTTTGATTGTGGAAGGGATGAT
GTTGGCTTCCCCTTTTGTTATTTTGgtcttttatttgatttataaATCAA
TTTTGAGCATTAGAAAATGCTGCAGTAGGCAGTAAGTTTTTAAGGGCTCT
TTactattttttgtcaattttacacagcaaaaaatgttgattttttaaaC
TTCCATAATGTTTATTaatatatacctgtaggcaaaaacagccattgaat
gaTTCCTGATTTACCACGGCTATGataccacggtagaattttttttttca
aatttagctttcaaagtttgattttttattgacaatcgaCAACGATTACC
AAAGAAATGTATTGAAATAGATCTATTGTCGATTTCATGAGCAAATAtta
tgactcaaa Run BLAST on NCBI transcript from alignment at sc0000156:68235..71893- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012811 ID=TCONS_00012811|Name=TCONS_00012811|organism=Clytia hemisphaerica|type=transcript|length=3659bp|location=Sequence derived from alignment at sc0000156:68235..71893- (Clytia hemisphaerica)
TCCGCCAACATTTCTTCCCTTAAGGTATTTTCCTTTGAACTTCGCCATGA
AAGTTTTTATTATTCTTTTCGCCAGCTCCCTTCAAAAACATATTCAGTGC
TCCGACGCTGAACCTTGCTGTTTAAACTTAGCTTTTTAATATCAATGTCA
TGTTAGTTAAAAGGAACTTTAAGGTTTAGCACTTCAAAATCTTACAACAC
CAACTAAAAGGGAACGGAATAAACGGTAACTTGGCTTCTCCGAAAACAAG
GAAGAACTTGTCTTTCTAAAGTAAAAAACAAACTCAAGAATTCATTCTAT
TTCCATTTTAGATTTGAGACCAGGACTCTCAGCAAGGGAGATTTACGTTT
CTTTAAACAAACAAAGCGATGATATTTCCACGTGTGGAACGAAGTGGCAA
CCGTGTCGAACCATCAAATTCACCATCAAGAATATCTCAAAGGCTTTGGA
TACCATTCTATTAGATTCTGGTTACACTTTCTATCCTGACCAGTCCATCG
AGATCGACAAGGAGCTCAACATAACCTCTTACAATGGAAATCATACAGGA
CATGAGAGGGCTTCCATTCTATTCCGTGAAAATTTCAATGAAGGATTCAT
GATAAGAGATAGTACTAGTATTCAAAATCTTGATGTAACGTGGAGGTTTA
CCTCAATCATTTTCAATCTTCAAGCGGGAAAATTTTTCACAGTAGAAAGC
TGCTTGATTATCATAAGTTCATATCTGCTCATAACGGGGTGGAGAGATAT
GGAAAAAGTTACTTTCGAAAAAGTTAAATTCAGTAACGTTACTTTTAAAG
GTTCTTTTTCGAATCCACAAGTGAAAAAGACGAATAGGCAAAACAACTCG
GCTACCAAGAGAAGCTCTCATAAAGAAAATTTATCCACCCCTTCGCTTAG
ATCAATAAATATAAACTACACCAATTGTCGGTTTCTAAACACTTTATTAA
TGATCTCAGCTCCCTTGTCAAGTTCGAATAGGCCTAATTTAACAATTTCG
GAGTGTCACTTTGAACATGCTGATACGAGGTTTCCTGCTATTAATAACAC
AGTTATTTACTTCGCCAGCAATCTTGTGCGTAAATCATATATGGGGTGGA
TGTATATCGGAAACATTTATGTAGAGAATTGTCATTTCCTCGAATCTTAT
GAACCCAGTGTTATTCTAGACGTAGTATTTTTTGATGGTCCATATGAGCT
AAATATTGACAATTGTACATTCGAGAATACTACGTATGGCGCTGTTCACG
TTGAGAATGGTGATATCACGATCAATAATTCTCGTTTTATGAACAACATT
TTTATTCCGATCAAACGATTTTCGGGCACGGTATACGCACCATCATTATC
AGTAACAACAGACAGCCTGACAATCATGAATAGTGAGTTCATAAATAATA
CCGCTCCTAGCAACCTAGGTGCGTCAGTGCAAGCAAAAAATATATATGAT
GAAAATGGTAGAAACGTTAAAATTTCCATTTTAAATACTACTATCATATC
AGGAAAATACCCAGTGTCGAGCGATGACACACCAATAAGTATTCAGATCG
CTGGTTATATTACACCAGCATTTCTATTTGATGAAACTTCAATAGTAAAA
TGTTCGACAGGACAGTACCTCCGATACTATCGAGTAGAGGGTAGCATTGG
ACTAACAGTACATTGCATCACTTGTAATACATCTTCATATAACGCAAAAG
ATATATCATTTTTAAAGGCCAAAGGTGGAATTTCCGATCTTCAGTTCTAC
TCACGTGATATTACTTGTTTCAAATGTCCGTACGAAGCTTTGTGTTATGA
TGGCGCTATTCGCAGTAAAGGCAACTACTGGGGATTATCTGATAACTCTG
GCAAAGTGACATTCTATCCTTGTCCACCATTGTATTGTTGCTCGTCCTTG
GAAGGGTGTGGATCATACAACACTTGTGCTAAGAATCGTGTTGGTACACT
TTGTGGTGATTGCCAGGAAGGACATGTTTTATCATTTTTCAATCACAATG
AATGCATCGATAAATCATTATGTGAATATTCGTGGACAGTTTGGTGCGGA
TATATCCTTGCTGTCGCTATCTTGTGTTTATTTTTTTTGTACAATGAGGA
CGTTTGGCGATTCTTTAGATCAAAAACAGCTCAAGACCACAACAAACAGA
ATGTGGAAGATCTTGATGAAATTTACGAAAACGATACTCAAACTCCCTTA
TTGAGACAAAAGCCGATGGAAAATTCTTCATCAAAGCAACTGACTGGTGT
CATTAAAATCACATTTTTCTTCTACCAATCAGCATCGATCATCCGTATTT
TAGCCTCTGCGAAAACGTACTATAACATGCCGAACATTTTGACCTTTTTG
GTATCCTTTTTCGACATCAGGTTGGAGATCACAAGTGATGTATTGAAAGT
TTGTCCACTCTTTACATCGAACTTTCTGGTAATAGATGCTTTTAAATCCA
GTTTACCGATAACATGTCTAGCAGCTCTGTTGCTCATGATGTTAGCCTGC
GTAATGACCAGAATCTATTATACTAAAAGGAGATCTGATAATGAAGTAGA
CTTTGGAAAATCGTTTTTACGCCGTTTGAAAGGAGCTTATGTAAACATTC
TATTGCTCGGCTATTCCAGCATCTCGATCTTTTGTTTACGGGGTATCCAT
TGCATTGATATTGATGGAGAAGAGCGCCTCAATGCCCAAGCTTCCGTGAA
ATGTTACACCGGTTGGCAATACCTCATCATGGTCGTGATTGGCTTATGGG
TTATTCCTTTCCCACTCGTCTTATACGCTGCTTGCCGGGCGCTCCGCTCA
TATCGTATTTCAACGAACGAGTTCCTTCTGGTCCTTACTTTACCACCGTC
GTCCGTCTACTACATGTGGTTGAGATCACGCATCTTCACTCAATATCATT
TTATCTTTGACCAACAAACCATTCAAGAGAAAGACCGAATCTTAGAAGTC
TTGAACGGTCCCTTCAAAGTCAACTCGAAAAATGAAGAATGTCGTTTAAT
TTGGGAGCCAGTATTAATATACCGTCGATTACTACTGATCGTTGTCACAA
CCTTTATAACATCGCCTGTCGTTAAATTATATCCAGTCGGTTTGGCGTTC
TTTGTATTTGTGGTGCACGATTCGTTGGAGAAACCATACGCTGACTCAAA
ACTTAATTTCATCCAAATGGTTTCACATTTGATCCTTTGTCTTTTGACAA
TGTTTAATATGTTCTGGGCACTGACCAATAATGTTGATGTACTGCAGAAT
CAAATGTTCTACATTCTCGGTGAAGTGCTTTTGATTGTGGAAGGGATGAT
GTTGGCTTCCCCTTTTGTTATTTTGGTCTTTTATTTGATTTATAAATCAA
TTTTGAGCATTAGAAAATGCTGCAGTAGGCAGTAAGTTTTTAAGGGCTCT
TTACTATTTTTTGTCAATTTTACACAGCAAAAAATGTTGATTTTTTAAAC
TTCCATAATGTTTATTAATATATACCTGTAGGCAAAAACAGCCATTGAAT
GATTCCTGATTTACCACGGCTATGATACCACGGTAGAATTTTTTTTTTCA
AATTTAGCTTTCAAAGTTTGATTTTTTATTGACAATCGACAACGATTACC
AAAGAAATGTATTGAAATAGATCTATTGTCGATTTCATGAGCAAATATTA
TGACTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012811-exon-sc0000156-1575043694:68235..71893 | TCONS_00012811-exon-sc0000156-1575043694:68235..71893 | Clytia hemisphaerica | exon |
| TCONS_00012811-exon-sc0000156-1510915933:68235..71893 | TCONS_00012811-exon-sc0000156-1510915933:68235..71893 | Clytia hemisphaerica | exon |
| TCONS_00012811-exon-sc0000156-1491911889:68235..71893 | TCONS_00012811-exon-sc0000156-1491911889:68235..71893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:68235..71893 - |
Blast
The following BLAST results are available for this feature:
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