TCONS_00012814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012814
Unique NameTCONS_00012814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012814 ID=TCONS_00012814|Name=TCONS_00012814|organism=Clytia hemisphaerica|type=transcript|length=2438bp
GTTTCTTATATAAAACTCTATTCCCCTTTCAATGTATTACTGAGCCAGAA
TTTACTGACTAAAAGATACCTCTGATTAGGTCAAGAAATTTATGGAACAC
AACTACCTTATCCGCCAGATAACAGGCGACAGACAACAGATAACCAACCA
CTGCTCAAATTTGAACTCATACCAATTAGGGCTGTAAtctcaaaacattt
tgaaatggtAAATAAAGTCAAGATAAACTAATTTTGTATGAATGTCCTAG
CTTGTGAATCAAATCgattttttcacgaaattttggAAGTTGAGCAAAAT
CATCTTTTAAACATAGTTTAATCCACCAAAGTTGAGTAAAAAGGGTGAAG
ACGCTGCCTTAAGGTCAAAAAATGCAATAATTCAACTATTTATAATATCA
TCCCCTTCTGACACAGGCCCTTACTGCACCTCGTCATCGACGTCTTCGAC
ATTCTTCTAATCAGTGCTAATGTACATTTTTTCTAAAGTTATTCTCTCCC
AACAAAATATTAAATTGGTATTCCTAAtgaaaataattgataataaTTAA
GATACAGTAGAGTTTATTCTGATCTTTAGTTTCAGGGAAAGCGTACACTT
GGGGGTTGAATACAGAGGGGCAATGTGGTTGTGGTGAAGAAGATGAAATT
TCCATACCAACAGAAATCGAATGGGACCAAAAGATTGTCTCCATTTCATG
TGGATATTATCACACAGCTTTTGTTACAGgGAATGGTATGCTTTACACAT
TTGGAGAAGATGAGACTGGGAAACTAGGCTTGAAAGAAAATCAGTTATCA
AACACCAGGCTCCCACAGGCTGTAGAGAAAGCACATGGTGATGGGTATAT
CAAAGTAGCCTGTGGTGCAAGACATACTGTAGCCATCACACAGAAAGGCA
AATGTTTTTCTTGGGGTGATGGGAGTCATGGTCAGTTAGGCCATGGTACA
TTTGTTCAGGAAGTGGCCACACCCAAATGTATCGAGTTGTTGGTCGATCA
AAAGATTGTTGAAATTTCGTGTGGTGAAAGTCACACGGCTGTCGTATCAg
AGAGTGGAAAGATATTTACGTTCGGTGACGGTCGTCACGGAAAGCTCGGT
CAAGGGGACGAGTGCTTTTCCAATCTCTTCAAACCGACTCTCATTACACG
CTTCAAAGGTTTCCACGTCACTCAAGTCTCTTGTGGGGGATGTCACATGT
TAGTGAGTGCTGTACGTAGGGAAAATGCTGATGAAGATGAAGGAGAAGAT
GAGACTGACTCCTTAGCTAGTTCGATGGTCTCGAGACGTAGTATACAAGA
TGCGAATATGACATTGAAACCAGGTGCTATGACATTCCCGACCGTCTCTA
AAAGAGATAAAAGAAGAATGAAAGACGAAGAAGGAGGTTTGAACCAATCA
TTGAATTTAAACCAATCACTAAACAATTCGATGAACATGGCACAATTAAG
TAAAACTGTTCCACAACTACCTTCCTCGCTGGATAAAAGTCGATTACCAA
AGATTCCGGGAATGTCTCCAAgaCCAAACAAAGAGGGTCAGGATATGCCA
CCTGTGCCTGCAAGACGAAATTTGGATAATGGAGCGCCAATACCTGCAAA
AAGAAACTTAAAACCGTTGAACAACGAAAAAAGCTCTGAACCTACGAACG
ATGTGCAAATGAAACAGAATAAAAGACTTGTTGCTGAAATCAGTTTTTCG
CGTAACGCTCCACCGCCTCGTAAAAAAGTTGAACCTCCGAAACGGGAGGA
CTTGAATAGCAATAACGAGGAATTAGTTcgtaaaaacaatcaaaagaatC
GTAAAAAGGACCTTTCTGAAGAGGAGGATAGTGAATATGATAGTGTCGAG
GAAAATGtaaataagcataaaaaagaacgGACTAGTAAactaaaatcttt
gaaacaaAGGAAAGGGAAGAGTTTTGAGGACAGTGAAGAggaggaaagtg
acgaaaattctTCCAAACAACCTTCGAGTAAAGCATCcgttaaaaattcg
aaaaaatcgaAATCTCTCGATAATGAGAGTTTCGACGATGACGAGGATGA
TGATGAAAGTGAGTTTGAGGAAAACTCGAAAGCGAGTAAGAATAGAAATa
cgaagaaaaatgataaactcCCTGCTATAAAGAAAAGACCTCTACCCCCg
tctttaaaaaatgatgacgtcagtgATTATGAGAGCGGCGAAGAGGAGAG
TGAGGAGAGCGGCGAAGAGGAGGAGATGTTGTTGCATCAGAAGAGTAAGA
AGAAGGACGACGAAACGAAAAGTCAAGGAAAAAGTGTAGGGAAAGTGAAA
GAAATACAAGTGAAGAAAACAACGCTGAAGAAAGTTCAAGAAGAAGATGA
CGATGATGACAATGacgatgatgacgatgatgacgAGGAAGagGACGAAG
AAGATGAGGAAGAAACTGAAGATGAGGATGAAGATGAT
Run BLAST on NCBI

transcript from alignment at sc0000156:106014..114845-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012814 ID=TCONS_00012814|Name=TCONS_00012814|organism=Clytia hemisphaerica|type=transcript|length=8832bp|location=Sequence derived from alignment at sc0000156:106014..114845- (Clytia hemisphaerica)
GTTTCTTATATAAAACTCTATTCCCCTTTCAATGTATTACTGAGCCAGAA
TTTACTGACTAAAAGATACCTCTGATTAGGTCAAGAAATTTATGGAACAC
AACTACCTTATCCGCCAGATAACAGGCGACAGACAACAGATAACCAACCA
CTGCTCAAATTTGAACTCATACCAATTAGGGCTGTAATCTCAAAACATTT
TGAAATGGTAAATAAAGTCAAGATAAACTAATTTTGTATGAATGTCCTAG
CTTGTGAATCAAATCGATTTTTTCACGAAATTTTGGAAGTTGAGCAAAAT
CATCTTTTAAACATAGTTTAATCCACCAAAGTTGAGTAAAAAGGGTGAAG
ACGCTGCCTTAAGGTCAAAAAATGCAATAATTCAACTATTTATAATATCA
TCCCCTTCTGACACAGGCCCTTACTGCACCTCGTCATCGACGTCTTCGAC
ATTCTTCTAATCAGTGCTAATGTACATTTTTTCTAAAGTTATTCTCTCCC
AACAAAATATTAAATTGGTATTCCTAATGAAAATAATTGATAATAATTAA
GATACAGTAGAGTTTATTCTGATCTTTAGTTTCAGGGAAAGCGTACACTT
GGGGGTTGAATACAGAGGGGCAATGTGGTTGTGGTGAAGAAGATGAAATT
TCCATACCAACAGAAATCGAATGGGACCAAAAGATTGTCTCCATTTCATG
TGGATATTATCACACAGCTTTTGTTACAGGTGAAAGTCGTACTTGGTTAA
AAAAAATTCTAAACTTTTATCCGTATTGGATAAAGCTATTGTTACAATTA
ATTTGATGTCTAAAACGGCCAAAAAATGACCAAAAATAGCCAAAATAGAC
TTGTTTCACAGGGCTGTAACATTTTATTTAAGAAAGATTATGTTAAATTT
GAAGTAAACGAGTTTCAAATTATTCTAAGAAGTGCCTTGCCTTGTTTTTT
AAACCAGTGGAGCATTCTGTATTTTTTTCATCGTCATTTTTCTTTTTCAA
TTTTCGATATTTTTTTCAAATTTCAACCTATTAGACAATTCTCTTCTATC
ATATCTTTCCAACGATGTGTATTTTTTNTTCAAATTTCAACCTATTAGAC
AATTCTCTTCTATCATATCTTTCCAACGATGTATATTTTTTAAACATAGC
ATAAATGGGTGCTAAACGAATTGTTAACAAAGTAAAGATTCTATTTGAGA
TGGATATAAATTTTTCAGTCTGTTTTATTACAACCAATGGACAATGGCAA
TAGGACAATAGCATCTAGTCTATGATGGACTAGATTTTCAAATTTCAACT
ACAGTTGACGCTCTTTAATTCGACGTTCTACTATTCGATAGGCTTCCTTA
TTCGATGAAATGTAAATTCCCTGTCAACATGAAACTCTCATAAACGACGC
TCCCTTATTCGATAAGCTCTCTTATTCGATGAAAATCCAATTCTCCTTGA
AGATCGAATAAGAGAGCGTCAACTGTATTTATTTGATAAGATGAAATCAG
AGAAGTTAACTCAAAACTAATCTAAGTTTAACCATTGCTAATATTTAATT
CAATTTTAGGGAATGGTATGCTTTACACATTTGGAGAAGATGAGACTGGG
AAACTAGGCTTGAAAGAAAATCAGTTATCAAACACCAGGCTCCCACAGGC
TGTAGAGAAAGCACATGGTGATGGGTATATCAAAGTAGCCTGTGGTGCAA
GACATACTGTAGCCATCACACAGAAAGGCAAATGTTTTTCTTGGGGTATG
GTACATTGTTTGATCTTTTACCCATGGAGATTTCTCTTGTCTTGTGACCT
GCATTTCTATTGGCTTTTCTTAAGAATTTTCCTTTATTACCGAGTGAACC
CAGTATCCGAGTATCTCTGGTATAACGCTTTCATCCAAAGTGCTTCATAC
AGCATGAAGTCTCACATTGAATTTATGATCATCAAGTTGTAGTAGCTTTC
AGGTGTCGTTTACTCACTAATTTGTAATTTCCAGGTGATGGGAGTCATGG
TCAGTTAGGCCATGGTACATTTGTTCAGGAAGTGGCCACACCCAAATGTA
TCGAGTTGTTGGTCGATCAAAAGATTGTTGAAATTTCGTGTGGTGAAAGT
CACACGGCTGTCGTATCAGGTCGAAATTCATTTTGTTTATATCCCATTCT
GGATTTATTTTCGCGATTTCTTCAATGTCATGGAAAATGCAATAAGAACA
ACGAAACTTGGCTCATTAGACCTACTTACGCGTACAAACTTTCGCGAGCA
GAATCTTTCGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAATG
TCTTTAAAAATTCTAGGAAGGGCCATTCGCGAACGTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAAATTCTCAATTTTACGTCT
TGATTCGTGAAAGTTTATGCTCGCGAAAAATATTTTTCTGTTAAATTCGC
GAAAGTAAATGTCGTGAATTTCGCGATTTCTCGTCCTCGCGAAAGTTTGT
ACGCCTAAAGTAACTAATATAGTCTAAAGATGAGATATCAGACACTCTTA
TATCACACGTGTCACATTGAAGTTCTATTGTTTTCGAACAGGACTTGAAG
ATTAAAACCTTGAATATTATGGCTTTAAGAACAATTAGCCGGTTAAGGTT
AGAAGTTACACCGTTAAGGACAATAAATGGAATCTTTGAGCTCCATTTCA
TTGTTCATCGGACGATCTCTCTTTTTTAAACACACTTTAAGTAATATTTT
GACGTGGTGCTTTTGCTTTACCTTTTAGAGAGTGGAAAGATATTTACGTT
CGGTGACGGTCGTCACGGAAAGCTCGGTCAAGGGGACGAGTGCTTTTCCA
ATCTCTTCAAACCGACTCTCATTACACGCTTCAAAGGTTTCCACGTCACT
CAAGTCTCTTGTGGGGGATGTCACATGTTAGTGAGTGCTGTACGTAGGGA
AAATGCTGATGAAGATGAAGGAGAAGATGAGACTGACTCCTTAGCTAGTT
CGATGGTCTCGAGACGTAGTATACAAGATGCGAATATGACATTGAAACCA
GGTGCTATGACATTCCCGACCGTCTCTAAAAGAGATAAAAGAAGAATGAA
AGACGAAGAAGGAGTAAGACATGTTTTCATTTTTTTGAAATTTATTCCCG
AGTTTTGTGAAATCGGATTTATTCTTAGTAACTTTGCTGTCCTTTTATTC
TAATTTTCTCCTAACTTGGTTCTGGGTCAGTCAATCAAAAAGATGATAGT
CCGACGGGATGGAATCAAGCCGAAGCTTTCGATGACTTTTAAGTTTATTC
AATTGAACGTTCTTTTTTCATTGAAGCTTATCAAACTGAACGCTCTTTTT
TTATCTTTATCATTTTCATCACATGAGCCTTTTCCACAAATTTTCTAATT
ATCATTTCAGGGTTTGAACCAATCATTGAATTTAAACCAATCACTAAACA
ATTCGATGAACATGGCACAATTAAGTAAAACTGTTCCACAACTACCTTCC
TCGCTGGATAAAAGTCGATTACCAAAGATTCCGGGAATGTCTCCAAGTAA
GTCAACAAACATTTAATATATGATTATTTTTTTTGCTAAAATCAGGTATT
TAAACATAACCTAATTCAACAACGAAATATCACTGTTTTTATTTCAGTCC
TTAACACTTATAAGATTATCTATGATGAAATTGGCCAACAAATTTTAAGA
ACATGCTAAGAATATCACCAACATGGAATTCGGCAAAAGAGCCTAAAAAT
GTCATCTTTAAATAATCACATTTCGATCATAACCTAAGAATACCGTAAGA
ATATTATTTTAGAATGATTTTCCACCAAAAGGTATATTTTTAACCATGAT
GTAATGAGAAATACCAATCTTATGCGTGCGTTAAAAAAAGCGTGTAACAA
TTATTATTATTTTTATTATTTTTGACATTTTCAGGACCAAACAAAGAGGG
TCAGGATATGCCACCTGTGGTAATTACCCATTATTTTCTCTTTCTACTTT
CTAACGAAAACCAAACAACCATATCAGATGGTCTTATTTTGATTAAACCA
AAGTTGCCTATTGATGATACTGTTGTAAGGAAGTCTGTATTGAATACATT
TTTTTTGTACCGTTTAAAAAAAACTAGCCTAGGTTACTACTGATTATCCA
TGCGAAGTTTGAAGACCTTAGCATAAGTAGAAAAGGCTACGTCACATTTT
CAATTTCAGGCCAGTTATCTTTTTTTTGAAACACTCGGTACTTTGAATTT
AATTTTTCTTTCTCATCTTAGCCTGCAAGACGAAATTTGGATAATGGAGC
GCCAATACCTGCAAAAAGAAACTTAAAACCGTTGAACAACGAAAAAAGCT
CTGAACCTACGAACGATGTGCAAATGAAACAGAATAAAAGACTTGTTGCT
GAAATCAGTTTTTCGCGTAACGCTCCACCGCCTCGTAAAAAAGTTGAACC
TCCGAAACGGGAGGACTTGAATAGCAATAACGAGGAATTAGTTCGTAAAA
ACAATCAAAAGAATCGTAAAAAGGACCTTTCTGAAGAGGAGGATAGTGAA
TATGATAGTGTCGAGGAAAATGTAAATAAGCATAAAAAAGAACGGACTAG
TAAACTAAAATCTTTGAAACAAAGGAAAGGGAAGAGTTTTGAGGACAGTG
AAGAGGAGGAAAGTGACGAAAATTCTTCCAAACAACCTTCGAGTAAAGCA
TCCGTTAAAAATTCGAAAAAATCGAAATCTCTCGATAATGAGAGTTTCGA
CGATGACGAGGATGATGATGAAAGTGAGTTTGAGGAAAACTCGAAAGCGA
GTAAGAATAGAAATACGAAGAAAAATGATAAACTCCCTGCTATAAAGAAA
AGACCTCTACCCCCGTCTTTAAAAAATGATGACGTCAGTGATTATGAGAG
CGGCGAAGAGGAGAGTGAGGAGAGCGGCGAAGAGGAGGAGATGTTGTTGC
ATCAGAAGAGTAAGAAGAAGGACGACGAAACGAAAAGTCAAGGAAAAAGT
GTAGGGAAAGTGAAAGAAATACAAGTGAAGAAAACAACGCTGAAGAAAGT
TCAAGAAGAAGATGACGATGATGACAATGACGATGATGACGATGATGACG
AGGAAGAGGTACCTTAAGTGGATTAATGTTTGTGTGGACTTTAATCGTGA
ATTGAGAAAAAATTGTCGCGTGGACAAAATTTCGCCCAATTTCTTTCATT
CTCCTGGGGGTTTGGGCCAAAATTCGGATTTTAAGTTTCTCGCGAGAACA
AATTTACACGAAAATGGCCGAGACTGTGCAATTTAAGCCTCCACCTGATC
TTCATTAAACTAACTTACTTTCAAACGGATGTCAGTGTCATATCGCTTTT
CAAGGGAAAATTCTAACTAAATTAATTTTTCTATTTAGTTCATTTTCAGT
CTCGCATATTAAATTATTAAAGGTGGTAACGATCGGGAAGTTTTCCCTAT
GGGAGATGATGAATCCTTACTTTTATTGCGATATTTACATATATTATGAT
GTGCTTATGAAAAGCGAAGATAGGGAATTCTTATGTTTTCACCATTCTGC
AACAGTTTTTANGTACGAAGAAAAATGATAAACTCCCTGCTATAAAGAAA
AGACCTCTACCCCCGTCTTTAAAAGATGATGACGTCAGTGATTATGAGAG
CGGTGAAGAGGAGAGTGAGGAGAGCGGCGAAGAGGAGGAGATGTTGCTGC
ATCAGAAGAGTAAGAAGAAGGACGACGAAACGAAAAATAAAGGAAAAAGT
GTAGGGAAAGTGAAAGAAATACAAGTGAAGAAAACAACGCTGAAGAAAGT
TCAAGAAGAAGAAGATGACAATGATGATGATGATGACGAGGAAGAGGTAC
CTTAAGTGGATTAATGTTTGCGTGGACTTTAATCGTGAATTGAGAAAAAA
TTGTCGCGTGGACAAAATTTCGCCCAATTTCTTTCATTCTCCTGGGGGTT
TGGGCCAAAATTCGGATTTTAAGTTTCTCGCGAGAACAAATTTACACGAA
AATGGCCGAGACTGTGCAATTTAAGCCTCCACCTGATCTTAATTAAACTA
ACTTACTTTCAAACGGATTTCAGTGTCATATCGCTTTTCAAGGGGAAATT
CTAACTAAATTAATTTTTTTATTTAGTTCATTTTCAGTCTCGCATATTAA
ATTATTAAGGGTGGTAACGATCGGGAAGTTTTCCCTATGGGAGATGATGA
ATCCTTACTTTTATTGCGATATTTATATATATTATAATGTGCTTATGAAG
CGAAGATAGGGAATTCTTTTGTTTTCACCATTCTGCAACAGTTCTTATTG
ATGTTATCTGGTACTCGATGTAGAAATTTTCTTCCGACACGCTAAAGCTC
TGAAGGTCGGGAAAATTATAAACATCTGGAACCTTTGGATTACGGAATTT
CTCCTGACCGTGTTCGTAAAATTTAGAAAGAGTCTGGGGACGGTAAAAAG
TTACTAGTGCCCCGAACAAAGAGTACACATGCAAAAAAAATTTCCCGTGC
GATTTCTAAATAGTGCTCCGAACTGAAAAATGTAAACAAAGCAGGACGGG
AACTAAAAATTTATTGAGAGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAACGATGACTACTATAGGTCTCCGATGGTATAT
TGGTCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCCGCCAATACGCCATCG
GAATATCAGATAATTATTGATGTTTTTCTTTGTATAGGACGAAGAAGATG
AGGAAGAAACTGAAGATGAGGATGAAGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007193XLOC_007193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012814-exon-sc0000156-1575043694:114117..114845TCONS_00012814-exon-sc0000156-1575043694:114117..114845Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:113101..113286TCONS_00012814-exon-sc0000156-1575043694:113101..113286Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:112727..112861TCONS_00012814-exon-sc0000156-1575043694:112727..112861Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:111333..111667TCONS_00012814-exon-sc0000156-1575043694:111333..111667Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:110900..111035TCONS_00012814-exon-sc0000156-1575043694:110900..111035Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:110477..110511TCONS_00012814-exon-sc0000156-1575043694:110477..110511Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:109338..110174TCONS_00012814-exon-sc0000156-1575043694:109338..110174Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1575043694:106014..106058TCONS_00012814-exon-sc0000156-1575043694:106014..106058Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:114117..114845TCONS_00012814-exon-sc0000156-1510915933:114117..114845Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:113101..113286TCONS_00012814-exon-sc0000156-1510915933:113101..113286Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:112727..112861TCONS_00012814-exon-sc0000156-1510915933:112727..112861Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:111333..111667TCONS_00012814-exon-sc0000156-1510915933:111333..111667Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:110900..111035TCONS_00012814-exon-sc0000156-1510915933:110900..111035Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:110477..110511TCONS_00012814-exon-sc0000156-1510915933:110477..110511Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:109338..110174TCONS_00012814-exon-sc0000156-1510915933:109338..110174Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1510915933:106014..106058TCONS_00012814-exon-sc0000156-1510915933:106014..106058Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:114117..114845TCONS_00012814-exon-sc0000156-1491911889:114117..114845Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:113101..113286TCONS_00012814-exon-sc0000156-1491911889:113101..113286Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:112727..112861TCONS_00012814-exon-sc0000156-1491911889:112727..112861Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:111333..111667TCONS_00012814-exon-sc0000156-1491911889:111333..111667Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:110900..111035TCONS_00012814-exon-sc0000156-1491911889:110900..111035Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:110477..110511TCONS_00012814-exon-sc0000156-1491911889:110477..110511Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:109338..110174TCONS_00012814-exon-sc0000156-1491911889:109338..110174Clytia hemisphaericaexon
TCONS_00012814-exon-sc0000156-1491911889:106014..106058TCONS_00012814-exon-sc0000156-1491911889:106014..106058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:106014..114845 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33698	3.3003	2.25101	1.89891	17.6878	15.2562	7.67039	6.88855	5.19774	6.95879	5.78025	4.65991	1.99901	2.43536	2.24196	3.07222	1.93391	2.16226	3.00286	3.38843	1.34374	1.30377	2.22067	1.72643	6.60293	6.10024	2.15436	1.18633	1.45166	1.2664
Blast
[Close]
BLAST of TCONS_00012814 vs. Swiss-Prot (Human)
Match: RPGR (X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.712e-58
Identity = 104/210 (49.52%), Postives = 137/210 (65.24%), Query Frame = 3 
Query:  585 GKAYTWGLNTEGQCGCGEEDEISIPTEIEWDQKIVSISCGYYHTAFVTGNGMLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIKVACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLVSAV 1214
            G+ + WG N+EGQ G      + +P ++   + +  ISCGYYH+AFVT +G LY FGE E GKLGL    L N R PQ V +   +  I+VACG  HTV +T+    +++G G  GQLG GTF+ E + PK IE + DQ I  ISCGE+HTA++++ G ++TFGDGRHGKLG G E F+N F PTL + F  F V  V+CGGCHM+V A 
Sbjct:  159 GRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCSNFLRFIVKLVACGGCHMVVFAA 366

HSP 2 Score: 108.227 bits (269), Expect = 6.717e-24
Identity = 71/216 (32.87%), Postives = 115/216 (53.24%), Query Frame = 3 
Query:  573 SLVSG--KAYTWGLNTEGQCGCGEEDEISIPTEIEW--DQKIVSISCGYYHTAFVTGNGMLYTFGEDETGKLGLKENQLSNTRLPQAVEKAHGDGYIK-VACGARHTVAITQKGKCFSWGDGSHGQLGHGTFVQEVATPKCIELLVDQKIVEISCGESHTAVVSESGKIFTFGDGRHGKLGQGDECFSNLFKPTLITRFKGFHVTQVSCGGCHMLV 1205
            ++V+G  K Y +G N  GQ G G +  IS PT ++    +K+   +CG  HT   T  G +Y  G +  G+LGL + +  NT     +     +  IK ++ G+  + A+T+ G+ F WGD S GQ+G    V  V  P+  ++ + + +  ISCG  H+A V+  G+++ FG+  +GKLG  ++   N   P L++      V QV+CGG H +V
Sbjct:   48 AVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTF--HVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKN-VSNVCVPQ--QVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIPE-KVIQVACGGEHTVV 257
The following BLAST results are available for this feature:
BLAST of TCONS_00012814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGR4.712e-5849.52X-linked retinitis pigmentosa GTPase regulator OS=... [more]
back to top