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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012817 ID=TCONS_00012817|Name=TCONS_00012817|organism=Clytia hemisphaerica|type=transcript|length=6257bpRun BLAST on NCBI protein sequence of TCONS_00012817-protein >TCONS_00012817-protein ID=TCONS_00012817-protein|Name=TCONS_00012817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1141bp MADAGFFRGTTAAQDSRFPDKQKKLMKSMRFEKSLGEKVDMEKVNLDVVKRun BLAST on NCBI transcript from alignment at sc0000156:218981..240103- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012817 ID=TCONS_00012817|Name=TCONS_00012817|organism=Clytia hemisphaerica|type=transcript|length=21123bp|location=Sequence derived from alignment at sc0000156:218981..240103- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:218981..240103- >TCONS_00012817 ID=TCONS_00012817|Name=TCONS_00012817|organism=Clytia hemisphaerica|type=CDS|length=47964bp|location=Sequence derived from alignment at sc0000156:218981..240103- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012817 vs. Swiss-Prot (Human)
Match: SRRM1 (Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 5.026e-40 Identity = 82/125 (65.60%), Postives = 105/125 (84.00%), Query Frame = 2
Query: 1589 DAGFFRGTTAAQDSRFPDKQKKLMKSMRFEKSLGEKVDMEKVNLDVVKPWIQKRITELLGGIEDEVLIEYIFQLLEESRHPDPKELQISVTGFLNGKNARIFMGELWTLLVSAQENIGGVPADFL 1963
DAGFFRGT+A QD+RF +KQKKL+K ++F + L +KVDM KVNL+V+KPWI KR+TE+L G ED+V+IE+IF L E ++PD K +QI++TGFLNGKNAR FMGELW LL+SAQENI G+P+ FL
Sbjct: 2 DAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL-GFEDDVVIEFIFNQL-EVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFL 124 The following BLAST results are available for this feature:
BLAST of TCONS_00012817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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