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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012837 ID=TCONS_00012837|Name=TCONS_00012837|organism=Clytia hemisphaerica|type=transcript|length=2047bpRun BLAST on NCBI protein sequence of TCONS_00012837-protein >TCONS_00012837-protein ID=TCONS_00012837-protein|Name=TCONS_00012837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp RTVKDKKQPDMSGQEQETDRNVEIWKIKKLIKSLQAARGNGTSMISLIIPRun BLAST on NCBI transcript from alignment at sc0000156:338684..352804- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012837 ID=TCONS_00012837|Name=TCONS_00012837|organism=Clytia hemisphaerica|type=transcript|length=14121bp|location=Sequence derived from alignment at sc0000156:338684..352804- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:338684..352804- >TCONS_00012837 ID=TCONS_00012837|Name=TCONS_00012837|organism=Clytia hemisphaerica|type=CDS|length=21696bp|location=Sequence derived from alignment at sc0000156:338684..352804- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012837 vs. Swiss-Prot (Human)
Match: ERF1 (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3) HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0 Identity = 353/422 (83.65%), Postives = 387/422 (91.71%), Query Frame = 2
Query: 32 MSGQEQETDRNVEIWKIKKLIKSLQAARGNGTSMISLIIPPKDQISRIAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTSEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLEDDSKFGFIIMDGNGALFGTLCGNTRDVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQMFISNDKINVAGLVIAGSADFKSELSQSDMFDGRLQAKILKVVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGKYFDEISQDTGRFCFGVDDTLKALEMGAVETLIVWENLETQRITLKNHSSDDNNILLLNPEQEKDRTNFLDKETNVELEILDKMPLLEWLANNYKSFGAALEIVTDRSQEGSQFCRGFGGIGGLLRYKVDFQSM 1297
M+ DRNVEIWKIKKLIKSL+AARGNGTSMISLIIPPKDQISR+AKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVT EGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALL DDSKFGFI++DG+GALFGTL GNTR+VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQ+FIS DK+NVAGLV+AGSADFK+ELSQSDMFD RLQ+K+LK+VD+SYGGENGFNQAIELS EVLSNVKFIQEKKLIG+YFDEISQDTG++CFGV+DTLKALEMGAVE LIV+ENL+ R L +++ IL L PEQEKD+++F DKET E E+++ MPLLEW ANNYK FGA LEIVTD+SQEGSQF +GFGGIGG+LRY+VDFQ M
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGM 422 The following BLAST results are available for this feature:
BLAST of TCONS_00012837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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