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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012848 ID=TCONS_00012848|Name=TCONS_00012848|organism=Clytia hemisphaerica|type=transcript|length=2227bpRun BLAST on NCBI transcript from alignment at sc0000156:390376..399505- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012848 ID=TCONS_00012848|Name=TCONS_00012848|organism=Clytia hemisphaerica|type=transcript|length=9130bp|location=Sequence derived from alignment at sc0000156:390376..399505- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012848 vs. Swiss-Prot (Human)
Match: WDR11 (WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1) HSP 1 Score: 422.165 bits (1084), Expect = 4.023e-131 Identity = 228/631 (36.13%), Postives = 363/631 (57.53%), Query Frame = 2
Query: 50 LSPKIIPGSLHAANKSACDWGWQGYVAYGCQNYVVVVDPKTSQVLQTLQNHAAPICGIKWHQEKFYHDLHSPYDLKLAAANTAGYILIWDIRAGALLNDFVEANKLPVCMEWLTGHDVSHDLLLVLYNPNVMILWNSDTGVKLWKKTFTDTVVQMVIDPFKNTNMTVMSTDWIMLVTDLSLSQAPSEKGRKFYMSNNAASPXXXXXXXXXXXXXXXXXXQTKSTIQRIKSVYGDLRGGKTEEEIEATCDCLQIAYLKASRNHVLILFPREILILDMEIGQSLGSFSIESTSPSFQAVYPCQQRDILFLLHENGSISMRAVRSPPAVPYMEDDDPERVLSQRISLDIIYDIKCHSDVFRLSRASRLMGFCVDPVYECQNVIILGDGRCLFWALSPPAGASSFHKENLKWKSLPDF-------VEIDRFKNEYEQISLNEVIPCLLSFGDDQMKKKYSKP---RFVLEGMSESIALNPVCCRMCPPMTTRNFSTYRPLLAVGCNNGILQIFNLSKGNLVKHLMMTTHSIKGLEWISLSSILVWFQGSSTNN----KSEIVHVDINTGLTKVLPSSRGLKESTVASLKVSQVKNYFLVLFKNKSAELWDATNLCQLREFPGNFPTITAFGWSPA 1900
+S + + G+L+A NK+A DWGWQG +AYGC + VVV+D T+Q LQ L+ H A + +KW +E ++H++ SPY L+LA+A+ G I++WD+ AG + E K ++WL D S DLLL ++ PN ++LWN+DTG KLWKK++ D ++ DPF +++T+++++ I+ ++D S S+ PS G+K Y+S+ +SP+ + +T+T K + ++K + + K E DCLQ+AYL + RNH+L+L+PREILILD+E+ Q++G +IE T F V PC QRD LF LHENG I++R RS + +++P+ Q ++ YD++ D R+++ R PV E +++ DGR + W L + + + N P + + + +N+ +SL+ +I G++ + + +F+L G+ + RMCPP+TT+N Y+PLLAVG +NG + +++L+ G L K L + + +KG+EW SL+S L F S+ NN ++E+ VD+ TG + RG ES + +KVS +K Y V+F++K ELWD LRE NFPTITA WSP+
Sbjct: 10 VSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATG---------AKKALNKVKIL---ITQEKPSAEFITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQRDGLFCLHENGCITLRVRRSYNNIFTTSNEEPDPDPVQELT----YDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALVVSDGRVMIWELK--SAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLS-FATSTPNNMGLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTCTLLREMSKNFPTITALEWSPS 621 The following BLAST results are available for this feature:
BLAST of TCONS_00012848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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