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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012854 ID=TCONS_00012854|Name=TCONS_00012854|organism=Clytia hemisphaerica|type=transcript|length=945bp
atATATCTTATACTTATCTGCACTTTTGAATTTCGTTGATTTCAAACATC
TCTTTTAGATCAAAAGCTACAAAAAAGTTCCAAATTGGcgataattttca
aaacaaagaaacctcttgcaagaaagaaaaacttttgatctaaaagAGGT
ATCAAATCTTAATTGATCATCTTCGTTtacacatttttagaaaattttac
aataatCTGTCCAGAATTACCTTTACAACTAGGTTGCTATTTTCATAATG
TTCTTCCCTTCACTTTAAACGTTTAAAAAGTACAGACTGTcaatcttttt
tatcaaaagagaTCTGTAACCCTCAAAGATCATGTCAGCACGTCCAACAA
AAATCGCGCAACTTTATCAGCTATTACGaatacaaaaaaattctaaaata
ataCAGTAAACAATACCTaaagaatgataaaaatttattcatttGACATA
TGGGAGGGAAGGTCTGGCCCCTCCAGGCCAACACAGTCTTCATCCATAAC
TAAATGTTTTTGCATGATATCGCTTTTGTCTTTCCGGATAAATACCCCGC
CTAGATAACAAAGCCCGCGTTTATTACGGCGAACACGGACGTATAAAACA
ACAGCAGTTAACACCAAGATCAATGCAACCATGACAACCACATAAATCCA
AACTTTCGAAGTTGTCCCCATTTCCCcgttttccccatttttaatCGAAT
GCACGTAACCCAGATTTTTCGCCTCGGTCACGTGAATATCTTCAACCCGG
TAAGCAGGAATAATCGGTTTACTTTTGTTTATGTCTTTTAATATTCTCTG
AGCGATACTTTCCGCTGATTCGTATTCCCGGCCTTCCATCGGTTTGACAT
CGGTAAATGTAACCCGGGCGCGCATCGGGTTGGTGGATTTGATTTCGGTG
ATGACGCGCTCTTCTGTATTGTCAATATCATAATCATTTACGANT Run BLAST on NCBI protein sequence of TCONS_00012854-protein >TCONS_00012854-protein ID=TCONS_00012854-protein|Name=TCONS_00012854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
XVNDYDIDNTEERVITEIKSTNPMRARVTFTDVKPMEGREYESAESIAQR
ILKDINKSKPIIPAYRVEDIHVTEAKNLGYVHSIKNGENGEMGTTSKVWI
YVVVMVALILVLTAVVLYVRVRRNKRGLCYLGGVFIRKDKSDIMQKHLVM
DEDCVGLEGPDLPSHMSNE Run BLAST on NCBI transcript from alignment at sc0000156:212542..213486 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012854 ID=TCONS_00012854|Name=TCONS_00012854|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at sc0000156:212542..213486 (Clytia hemisphaerica)
ANTCGTAAATGATTATGATATTGACAATACAGAAGAGCGCGTCATCACCG
AAATCAAATCCACCAACCCGATGCGCGCCCGGGTTACATTTACCGATGTC
AAACCGATGGAAGGCCGGGAATACGAATCAGCGGAAAGTATCGCTCAGAG
AATATTAAAAGACATAAACAAAAGTAAACCGATTATTCCTGCTTACCGGG
TTGAAGATATTCACGTGACCGAGGCGAAAAATCTGGGTTACGTGCATTCG
attaaaaatggggaaaacgGGGAAATGGGGACAACTTCGAAAGTTTGGAT
TTATGTGGTTGTCATGGTTGCATTGATCTTGGTGTTAACTGCTGTTGTTT
TATACGTCCGTGTTCGCCGTAATAAACGCGGGCTTTGTTATCTAGGCGGG
GTATTTATCCGGAAAGACAAAAGCGATATCATGCAAAAACATTTAGTTAT
GGATGAAGACTGTGTTGGCCTGGAGGGGCCAGACCTTCCCTCCCATATGT
CaaatgaataaatttttatcattctttAGGTATTGTTTACTGtattattt
tagaatttttttgtattCGTAATAGCTGATAAAGTTGCGCGATTTTTGTT
GGACGTGCTGACATGATCTTTGAGGGTTACAGAtctcttttgataaaaaa
gattgACAGTCTGTACTTTTTAAACGTTTAAAGTGAAGGGAAGAACATTA
TGAAAATAGCAACCTAGTTGTAAAGGTAATTCTGGACAGattattgtaaa
attttctaaaaatgtgtaAACGAAGATGATCAATTAAGATTTGATACCTc
ttttagatcaaaagtttttctttcttgcaagaggtttctttgttttgaaa
attatcgCCAATTTGGAACTTTTTTGTAGCTTTTGATCTAAAAGAGATGT
TTGAAATCAACGAAATTCAAAAGTGCAGATAAGTATAAGATATat Coding sequence (CDS) from alignment at sc0000156:212542..213486 >TCONS_00012854 ID=TCONS_00012854|Name=TCONS_00012854|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0000156:212542..213486 (Clytia hemisphaerica)
NTCGTAAATGATTATGATATTGACAATACAGAAGAGCGCGTCATCACCGA
AATCAAATCCACCAACCCGATGCGCGCCCGGGTTACATTTACCGATGTCA
AACCGATGGAAGGCCGGGAATACGAATCAGCGGAAAGTATCGCTCAGAGA
ATATTAAAAGACATAAACAAAAGTAAACCGATTATTCCTGCTTACCGGGT
TGAAGATATTCACGTGACCGAGGCGAAAAATCTGGGTTACGTGCATTCGa
ttaaaaatggggaaaacgGGGAAATGGGGACAACTTCGAAAGTTTGGATT
TATGTGGTTGTCATGGTTGCATTGATCTTGGTGTTAACTGCTGTTGTTTT
ATACGTCCGTGTTCGCCGTAATAAACGCGGGCTTTGTTATCTAGGCGGGG
TATTTATCCGGAAAGACAAAAGCGATATCATGCAAAAACATTTAGTTATG
GATGAAGACTGTGTTGGCCTGGAGGGGCCAGACCTTCCCTCCCATATGTC
aaatgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012854-exon-sc0000156-1491911889:212542..213486 | TCONS_00012854-exon-sc0000156-1491911889:212542..213486 | Clytia hemisphaerica | exon |
| TCONS_00012854-exon-sc0000156-1510915933:212542..213486 | TCONS_00012854-exon-sc0000156-1510915933:212542..213486 | Clytia hemisphaerica | exon |
| TCONS_00012854-exon-sc0000156-1575043694:212542..213486 | TCONS_00012854-exon-sc0000156-1575043694:212542..213486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:212542..213486 . |
Blast
The following BLAST results are available for this feature:
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