TCONS_00012856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012856
Unique NameTCONS_00012856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012856 ID=TCONS_00012856|Name=TCONS_00012856|organism=Clytia hemisphaerica|type=transcript|length=744bp
AATTCTTGATTGAGGTATATATTGCGTGCTAGATTTAGGCTTTTCATCTT
AAatctaagaatactgtaagaatatttcaggatgatttcgaccaaaaagt
taagaatattcatgatgaaatgggtttacaatatttttataaaaaaaggc
gTGTATAGTAAAACGAAGTGAAAAAACGCAGCTACGgacaattttaactt
tttaacttttcaataaCGCTTCAGTAAACGATCCATGCCTGTCAATCTTG
GTTCTAATTTTTCTAGCAGTACTTGGCGAAAATATGAACACATTGTGTTC
CCCCATTATCGTCACCATAATATTCAAACAAATCTTCCGTGTACCACACC
CTTATTTCCTGGCCTTGTTCGAACGCGTCGTAAGCATTCGAGAACAAGGT
CAACGTGTCATCAGTCATATGATTAGCAccttgaacttgaaaaataccGT
GATTGTGAGTTCCGCGTGGAGCAACGACATGGTTATATACGTCTGTCATC
GCCGTGTATACAGATTCTGCTGATCTTCCCGGGCAACCCCATCTGCTGTA
ACCCAATTGGACTGCACAGGTGACTCCACCCGAGACGTgtaccattttga
aatatttgatacGTCCAGTTTCACNTTGGACTGCGCAGGTGACTCCACCC
GAGACGTgtaccattttgaaatatttgatacGTCCAGTTTCACGAATTTG
GAGTCTGGCAaatgatttctctttcgcaccgtaGCATATTGGTT
Run BLAST on NCBI

protein sequence of TCONS_00012856-protein

>TCONS_00012856-protein ID=TCONS_00012856-protein|Name=TCONS_00012856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
PICYGAKEKSFARLQIRETGRIKYFKMVHVSGGVTCAVQXETGRIKYFKM
VHVSGGVTCAVQLGYSRWGCPGRSAESVYTAMTDVYNHVVAPRGTHNHGI
FQVQGANHMTDDTLTLFSNAYDAFEQGQEIRVWYTEDLFEYYGDDNGGTQ
CVHIFAKYC
Run BLAST on NCBI

transcript from alignment at sc0000156:387697..388440

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012856 ID=TCONS_00012856|Name=TCONS_00012856|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at sc0000156:387697..388440 (Clytia hemisphaerica)
AACCAATATGCtacggtgcgaaagagaaatcattTGCCAGACTCCAAATT
CGTGAAACTGGACgtatcaaatatttcaaaatggtacACGTCTCGGGTGG
AGTCACCTGCGCAGTCCAANGTGAAACTGGACgtatcaaatatttcaaaa
tggtacACGTCTCGGGTGGAGTCACCTGTGCAGTCCAATTGGGTTACAGC
AGATGGGGTTGCCCGGGAAGATCAGCAGAATCTGTATACACGGCGATGAC
AGACGTATATAACCATGTCGTTGCTCCACGCGGAACTCACAATCACggta
tttttcaagttcaaggTGCTAATCATATGACTGATGACACGTTGACCTTG
TTCTCGAATGCTTACGACGCGTTCGAACAAGGCCAGGAAATAAGGGTGTG
GTACACGGAAGATTTGTTTGAATATTATGGTGACGATAATGGGGGAACAC
AATGTGTTCATATTTTCGCCAAGTACTGCTAGAAAAATTAGAACCAAGAT
TGACAGGCATGGATCGTTTACTGAAGCGttattgaaaagttaaaaagtta
aaattgtcCGTAGCTGCGTTTTTTCACTTCGTTTTACTATACAcgccttt
ttttataaaaatattgtaaacccatttcatcatgaatattcttaactttt
tggtcgaaatcatcctgaaatattcttacagtattcttagatTTAAGATG
AAAAGCCTAAATCTAGCACGCAATATATACCTCAATCAAGAATT

Coding sequence (CDS) from alignment at sc0000156:387697..388440

>TCONS_00012856 ID=TCONS_00012856|Name=TCONS_00012856|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000156:387697..388440 (Clytia hemisphaerica)
CCAATATGCtacggtgcgaaagagaaatcattTGCCAGACTCCAAATTCG
TGAAACTGGACgtatcaaatatttcaaaatggtacACGTCTCGGGTGGAG
TCACCTGCGCAGTCCAANGTGAAACTGGACgtatcaaatatttcaaaatg
gtacACGTCTCGGGTGGAGTCACCTGTGCAGTCCAATTGGGTTACAGCAG
ATGGGGTTGCCCGGGAAGATCAGCAGAATCTGTATACACGGCGATGACAG
ACGTATATAACCATGTCGTTGCTCCACGCGGAACTCACAATCACggtatt
tttcaagttcaaggTGCTAATCATATGACTGATGACACGTTGACCTTGTT
CTCGAATGCTTACGACGCGTTCGAACAAGGCCAGGAAATAAGGGTGTGGT
ACACGGAAGATTTGTTTGAATATTATGGTGACGATAATGGGGGAACACAA
TGTGTTCATATTTTCGCCAAGTACTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007208XLOC_007208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012856-proteinTCONS_00012856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012856-exon-sc0000156-1491911889:387697..388440TCONS_00012856-exon-sc0000156-1491911889:387697..388440Clytia hemisphaericaexon
TCONS_00012856-exon-sc0000156-1510915933:387697..388440TCONS_00012856-exon-sc0000156-1510915933:387697..388440Clytia hemisphaericaexon
TCONS_00012856-exon-sc0000156-1575043694:387697..388440TCONS_00012856-exon-sc0000156-1575043694:387697..388440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:387697..388440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0663135	0.0646661	0.225251	0.440745	1.07313	0.848002	0.170513	0.159632	0.558811	0.415307	0	0.264987	0.0882061	0.183206	0.037655	0.161638	0.547595	0.561267	0	0.0737656	0.833504	0.375281	2.66118	4.07842	1.13917	2.98649	1.36394	1.06746	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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