TCONS_00012862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012862
Unique NameTCONS_00012862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012862 ID=TCONS_00012862|Name=TCONS_00012862|organism=Clytia hemisphaerica|type=transcript|length=856bp
ATTCTGAAAGACCTAGTGTCTAATGCTTAAAAGTCTGATGTTCAAACTCT
GAATTTCAGAGGTAAGTTAGCACTTCAAAATTATTTGTTCTGGTTTCAAA
CTTTTGCAGGGAATTCCTCTTTTTGTCAATATGATTTGTCTGGATATCAA
GATCAACTTATTCAAAAGAGATTCCAGCTAACATCACAAAAAAACAGGCC
AAAACCCAAAGCCTTTGAAAATAATGTTAAGCAACTTATAATCTGGGTCA
AAATATATAtcgagaattttggttatttcatCGTTTTTAGAAATATAAAG
TTCGGGCGataaagtcgcttttgggctatttgttacatgtaatcgaatat
ttcaattttggaggGTTTTATAGACttttctgagccttattggacaaTTG
TTAAACTTTTGGATACTCAGGTCCTACTCATATCCTAAGGTCCCAGGGCG
TTAAGTCTAGCGGTAAAACTCTACCCATCCAACTACCGATGAAGCGTAAA
ACTCTACCCATCCAACTACCGATGAAGCGTAAAACTCTACCCATCCAACT
ACCGATGAAGCGTAAAACTCTACCCATCCAACTACCGATGAAGCGTGAAA
TGCTGAACAAAAAGTTAAACCatccaacctaagttagagcgcttccaaat
catTTGTGGCTATATAGACTTCGTGgagatttcccttttttctcaaatat
tgtgACCTTGATTATAGATGCTACGACGTTGCGTCATTTTGACTGGGTag
ttttccaaaatttatttattgtttctactctcgggtacctaatagccgcc
cccccccgctaattaatttttcgaaagttttccacccaggacattcttat
tccaac
Run BLAST on NCBI

transcript from alignment at sc0000156:481113..481968

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012862 ID=TCONS_00012862|Name=TCONS_00012862|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at sc0000156:481113..481968 (Clytia hemisphaerica)
gttggaataagaatgtcctgggtggaaaactttcgaaaaattaattagcg
ggggggggcggctattaggtacccgagagtagaaacaataaataaatttt
ggaaaactACCCAGTCAAAATGACGCAACGTCGTAGCATCTATAATCAAG
GTcacaatatttgagaaaaaagggaaatctcCACGAAGTCTATATAGCCA
CAAatgatttggaagcgctctaacttaggttggatGGTTTAACTTTTTGT
TCAGCATTTCACGCTTCATCGGTAGTTGGATGGGTAGAGTTTTACGCTTC
ATCGGTAGTTGGATGGGTAGAGTTTTACGCTTCATCGGTAGTTGGATGGG
TAGAGTTTTACGCTTCATCGGTAGTTGGATGGGTAGAGTTTTACCGCTAG
ACTTAACGCCCTGGGACCTTAGGATATGAGTAGGACCTGAGTATCCAAAA
GTTTAACAAttgtccaataaggctcagaaaaGTCTATAAAACcctccaaa
attgaaatattcgattacatgtaacaaatagcccaaaagcgactttatCG
CCCGAACTTTATATTTCTAAAAACGatgaaataaccaaaattctcgaTAT
ATATTTTGACCCAGATTATAAGTTGCTTAACATTATTTTCAAAGGCTTTG
GGTTTTGGCCTGTTTTTTTGTGATGTTAGCTGGAATCTCTTTTGAATAAG
TTGATCTTGATATCCAGACAAATCATATTGACAAAAAGAGGAATTCCCTG
CAAAAGTTTGAAACCAGAACAAATAATTTTGAAGTGCTAACTTACCTCTG
AAATTCAGAGTTTGAACATCAGACTTTTAAGCATTAGACACTAGGTCTTT
CAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007214XLOC_007214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012862-exon-sc0000156-1491911889:481113..481968TCONS_00012862-exon-sc0000156-1491911889:481113..481968Clytia hemisphaericaexon
TCONS_00012862-exon-sc0000156-1510915933:481113..481968TCONS_00012862-exon-sc0000156-1510915933:481113..481968Clytia hemisphaericaexon
TCONS_00012862-exon-sc0000156-1575043694:481113..481968TCONS_00012862-exon-sc0000156-1575043694:481113..481968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:481113..481968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385865	0.270346	0.124641	0.185688	1.18405	0.818703	1.12797	0.395997	0.41653	0.745266	0.555544	0.657347	0.547028	0.189365	0.280657	0.167072	0.246983	0.168766	0.235456	0.48797	0.161661	0.467818	0.316211	0.403284	0.588731	1.1034	0.528213	0.484995	0.306699	0.311655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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