TCONS_00012867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012867
Unique NameTCONS_00012867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012867 ID=TCONS_00012867|Name=TCONS_00012867|organism=Clytia hemisphaerica|type=transcript|length=274bp
AGAGATTTTCAAACGCCTACGATTCCACACCTTCACCTGGGATGTATAAT
GATCCACGCCGCGCCCTTGAAATCTGTAACAGAATAAGTGGAATGAAGAA
AAGTCCGTTCGGTCAAACTTCAACGCGATTTCGAAAAGACCACCATGTTC
GCAAAACACCAGCTTTGACGGGAACAGCAAAAGTCTTTTTAGCTAATGCA
ACCAAAGTTTCATATTCTTCATCGCCAACTGCGTGAATGCTGCTCATTTT
GTTTAATGAAACGTTCGTTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000157:48442..52929+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012867 ID=TCONS_00012867|Name=TCONS_00012867|organism=Clytia hemisphaerica|type=transcript|length=4488bp|location=Sequence derived from alignment at sc0000157:48442..52929+ (Clytia hemisphaerica)
AGAGATTTTCAAACGCCTACGATTCCACACCTTCACCTGGGATGTATAAT
GATCCACGCCGCGCCCTTGAAATCTGTAACAGGTAGGTACTGTTTGGTTT
TTATGCTCCTTCGAAGCTAGGTTAAGACTTTCCAcattacaaaatttttg
aatacttcggatatttttaatttcttttgaaatgctcctaatttcaccat
tttgtaagtatttttatgCAATTCCTTAAGACATTGGATGTTTTAGTGCC
CTTAAgcctttaaaatattcttaacttgatCTTAGTATTTCAGCCATTTT
AGCCTGATGATCATAGATANTAAATATCGCTGTAACAACAAATTTACGTA
ATATATATAAACATGTGTATACGTAATTGAAAAAGGACGCAAAATTAGGG
CTATTAGCCAATAAGATAATGAGAAATTTTAACTAATCTGAGAAAACCTT
TTTCATTTAGTTACCAAGATATCATGAAATTGTCACTAAACAAGAAACAA
AGAAGGTAAATTTTATCTATCCTCTTTATGAGGGTGAATTGAAAGATTAG
TTGTACTAACCAATCTACAGGGTTAAACAGTTGTAAGAAACCCTGGATGT
GAcaataattactttttaaaccAAATGTTCCGACCATTAGCAATTTTATG
TATCTATCTGATAATTGTAATTATAATTAAAATGGTGTTAAAACGATGCT
TTCATGCCTAAAATANTTTTTATGTTATTTGGAATTTCTCCTCTCGATTT
TAGAATAAGTGGAATGAAGAAAAGTCCGTTCGGTCAAACTTCAACGCGAT
TTCGAAAAGACCACCATGTTCGCAAAACACCAGGTAATGAGTTATAGTAC
TGATTCTACCAGGAGTCTTATTTAGGCTCGGTAAGATGCGAATTTCGTCA
GTCTAAGACACANTGAAGCGAAGAAAGTAAATGATAATGCTACAGAAAGA
CCATCTTTCGGATCACAAGCTAAAGTATGCACAAATATCATATTTCTTTA
CACACTAGATGAGCTAATTACTCACAGATTTTTTCCGTGGAAGTGTTTCC
AGTTTTGAAGTCGGCAAGTCCGCCATGATGTTTTCtaatttactttttca
aaagaatcgTTCGAATCTTGGAGCATTCGGATCGCGCTTTTTAcgaccag
aattgaaaacaagatggaGCGGAGGGCTTGTCAGCTTTAAACTGGTCACG
CTTCTTTTTATATGGGAAGCCTGATTATCAAGTAGTTAGTGAAAAACTAT
NACTATACTAATAAGTTTAGTACGCAAGTGGACAGATTCGTAAAAATGAT
TACTTTAGGCACGCACAAAGTTTGTTAAACAAGTTAAAGAAATGAATTAC
AAAAGTCCTATGTATTAAATATGCTATGCAAAGGTTGTAGTCCTAACAAA
TCATACNTCGATAATTAAGTCCCACGTGGTGAACGAATTAATGAAAGAGA
CTTGGGTTGgtgaaaaaagttatttttttgatGTAAAATAATGCTACTAC
AGNTAGTCCTAACAAATCATACGTCGCTGTTTACTGGTTGAGAAGATATT
ACTCTACTTCAGTGTGGTCTTTTAAATCAACATCATCTGGCGTTGATATT
CGAGTATAAACTTTGTACCGATAGCAGAAAGCTACGGGTATGTGTGGGAT
ACCTTAGGATAGGTAAACTTTTTCATTTCCGGGTAAACTTTCTTTGTGCA
TtcagtgttgcaacttttccgTCCAGCTGAGATACAAATACGCTATTTCC
GTCCTTCCAGCAGTAATGATTTTGTTCAAAGGACTCACTAAACCAaagat
tttttaacaaattccGTCCATAGTTACAAAACCTGGTTGCAACACTAATT
TACGGGATCCTTCTGCTGTTTTTACGGGCATGCCGGCAATGTTTTTTTGC
TGCGTACAAATTGCGTAAACAACACAGAACGGCTCTGAGACTGACCACCT
AACAAGCTGAAGCGACTTTTTACCTATCCAGTGTAGTTCTTTCTCCGTTG
TTAGAGTGGCAATAAGTTTCCTACATCCTACAGTATGATTCGACTTTATG
AACCGTGAAATTCTTTCTATACCTATCACTCATCACATCCTAAACATCGA
GTAATCATAGATAGCTACTCGGTTGTACCATAGTTATATCTTCACTAATG
CCACCGACAGGTATGGAGTCCCCAGAGCTAATCATTTCATAATTCACATT
GCCATTCAAATGTCTGGATATATCACCACTCACATCATCTAAAATATCCC
TGGTAACATTTTGATCGACATTGTTGTGATTATATGGTGAATTTTCATAA
GGATCATTTATAATGGGTTCTACCGTaaatttgcatttataaaaACTACC
TTTATGTCTCACAGTCCATTCTCGATAGCTCAATGAAGCAGCATTGTCTA
CCATTGACATTTGATCTGGATCAACTTCTTCTTTGATGCGTATCTTCGAT
GGTGGCTCTATGGTCGCTTTTTGTTCATTTATGCACATTGAAGCACCTGA
TAATGTATTTCCGGAACTGTACACTTCCCGAGGAAGTAGTGTATTTTGAT
CACTTTCACCCATAGAATTCTCATATAAAGAATCTGTTGGCTCCTTCTTA
GAATGTTGTATATCGTTTTCCTGCATATTTGATTGGTCTAATACACACAT
AGAAGGAGGACATTGTTCATCTCTCTTCTTCTGTTCCGCTATTTTAGATT
TGATATCTCGAACTTGTTTTTGACTTAGCCCAGCAAAATCATCTTTCACT
CTGGTATAAATCTTTTTATAACCAGCTGGTTTATCTTTGTTAAGATTATC
AACAATAGCTTTGATTTGACTTTTCTTGATCacctaaaaatgaaaacaaa
agtaacaAATAGTCAATTTGTTGGAGTGTTACCTTCCGTTcgcatacagt
tgacgctctctaatttcgACGTTGTACTATTAGATATGATCCATTACTCG
ATTGCTCCATTGAAAGTCTCCTTCAATAATATTGTCTCATAAACAACACT
CTTGAAAATTCCAATCCTCCTTgaaagtcgaattagagagcatcgattga
gaatttttttttttttttagacatCTAAGCTAAGGAAGATTAGAATTCGG
ACTGACGACTTCTCTATTACCTTTGGTTTCTCAGTTGTTGTTCATATTTC
TTGGCATCCTTTTAAGCTTTTTCGGCACAACAGAAATCTCTTTCAAAAAG
CCGATCAATACAAAAAGCAAACTTTTACCAATCTAACCCTAACGCCAAAA
GGGTATTCGTCTCCAGTTTACAAAAGAGAATGGGaacgaaaatctttttg
aatttgTGAATATGTCACTGTTTTTCAAGTCTAGTGCAGCCTCAGTAAGC
CTCATGTCANTGAAGCACCTGATAATGTATTTCCGGAACTGTACACTTCC
CGAGGAAGTAGTGTATTTTGATCACTTTCACCCATAGAATTCTCATATAA
AGGATCTGTTGGCTCCTTCTTAGAATGCTGTATGTCGTTTTCCTGCATAT
TTGATTGGTCTAATACACACATAGAAGGAGGACATTGTTCATCTCTCTTC
TTCTGTTCCGCTATTTTAGATTTGATATCTCGAACTTGTTTTTGACTTAG
CCCAGCAAAATCATCTTTCACTCTGGTATAAATCTTTTTATAACCAGCTG
GTTTATCTTTGTTAAGATTATCAACAATAGCTTTGATTTGACTTTTCTTG
ATCacctaaaaatgaaaacaaaagtaacaAATAGTCAATTTGTTGGAGTG
TTACCTTCCGTTcgcatacagttgacgctctctaatttcgACGTTGTACT
ATTAGATATGATCCATTACTCGATTGCTCCATTGAAAGTCTCCTTCAATA
ATATTGTCTCGTAAACAACACTCTTGAAAATTCCAATCCTCCTTgaaagt
cgaattagagagcatcgattgagaatttttttttttttttagacatCTAA
GCTAAGGAAGATTAGAATTCGGACTGACGACTTCTCTATTACCTTTGGTT
TCTCAGTTGTTGTTCATATTTCTTGGCATCCTTTTAAGCTTTTTCGGCAC
AACAGAAATCTCTTTCAAAAAGCCGATCAATACAAAAAGCAAACTTTTAC
CAATCTAACCCTAACGCCAAAAGGGTATTCGTCTCCAGTTTACAAAAGAG
AATGGGaacgaaaatctttttgaatttgTGAATATGTCGCTGTTTTTCAA
GTCTAGTGCAGCCTCAGTAAGCCTCATGTCAGCCTGTTTTTTAATTAAGA
TGTATATAATAAAACCATTTTAACATACCTTTTTCCCCTTATAATACAAT
ACATCTTCTTCAGCAGTGAATTTTCCATTGGATCGCCAGAATTTAATGAC
AGcattcttttgtattttactTCTAGCTTTGACGGGAACAGCAAAAGTCT
TTTTAGCTAATGCAACCAAAGTTTCATATTCTTCATCGCCAACTGCGTGA
ATGCTGCTCATTTTGTTTAATGAAACGTTCGTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007218XLOC_007218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012867-exon-sc0000157-1491911889:48442..48523TCONS_00012867-exon-sc0000157-1491911889:48442..48523Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1510915933:48442..48523TCONS_00012867-exon-sc0000157-1510915933:48442..48523Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1575043694:48442..48523TCONS_00012867-exon-sc0000157-1575043694:48442..48523Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1491911889:49195..49274TCONS_00012867-exon-sc0000157-1491911889:49195..49274Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1510915933:49195..49274TCONS_00012867-exon-sc0000157-1510915933:49195..49274Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1575043694:49195..49274TCONS_00012867-exon-sc0000157-1575043694:49195..49274Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1491911889:52818..52929TCONS_00012867-exon-sc0000157-1491911889:52818..52929Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1510915933:52818..52929TCONS_00012867-exon-sc0000157-1510915933:52818..52929Clytia hemisphaericaexon
TCONS_00012867-exon-sc0000157-1575043694:52818..52929TCONS_00012867-exon-sc0000157-1575043694:52818..52929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:48442..52929 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.55788	6.74526	1.14804	3.86405	39.7461	34.2969	4.82266	8.72242	11.7344	24.7106	20.6196	14.3541	2.78694	2.21645	2.22639	3.98587	0	8.61086	4.37686	2.46501	4.47387	2.84827	8.32744	7.23308	0	0.576893	12.2371	3.509	6.05302	1.24251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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