TCONS_00012874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012874
Unique NameTCONS_00012874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012874 ID=TCONS_00012874|Name=TCONS_00012874|organism=Clytia hemisphaerica|type=transcript|length=834bp
ATATATTTTGTCTGTGTCTCTATATGCGAGAGAGAAATGGTCTCAACCTC
AGCTATGTTACAGTTAGTTCAAGCTGCAGCCAAGGATAAGTTGATGAATG
ACAAAGTCCACAAGGAATCtgaagatgacgtcattttgccaaATGAAGAT
GACGAAATGAGAGCCAAAGAACAAGAGATTATCAAGCTGACACAACGTTT
GATCGCTTCAATCACCATTGGCGACTTCGAAACTTATTCGAAACTTGTGG
ACTTTCGACTGACTTGCTTTGAGCCACACGGCAAAGGAAACTTAGTAGAG
GGCCTGGATTTTCACAAATACTATTTCGACAACGTTTTGAAACCATCGAA
CTCGCCTGTGAACACGACCATTCTCTCACCGCACGTCATTTTGCTTTCGG
ACGAGTCCGCGTGTATCAGTTACATTCGTCTCACACAAAAGATCGACCAT
AACAATCAACCGTATACCGTTCAAAACGAAGAAACTCGTGTTTGGCAGCG
TAAAGGCTCCAATTGGCTATGCGTACATTTCCACATTAGTCGAAACACTG
AAGTTACGAAACCTTGAAGTATAGTATATGATGGAGAACCCAACCCCTCT
TTCCTCCTCAAACGAAACATAaagtgaatttaaaaaaaacgacGTACAAA
AAAAACCGCATAACCCATTTTTCTTGTACCCCATCATACTTCTTTGGagt
tttggttttggtttttgtttttttttgttgttgccaCAAAGAGAGGAGAA
AATGGATCAAGGTGTGTTAGACATTCGACGGAGAAATACCATGACGGAAT
AAGAGATtagaacaattttcaaaaaaaaaaatNN
Run BLAST on NCBI

transcript from alignment at sc0000157:81447..91307+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012874 ID=TCONS_00012874|Name=TCONS_00012874|organism=Clytia hemisphaerica|type=transcript|length=9861bp|location=Sequence derived from alignment at sc0000157:81447..91307+ (Clytia hemisphaerica)
ATATATTTTGTCTGTGTCTCTATATGCGAGAGAGAAATGGTCTCAACCTC
AGCTATGTTACAGTTAGTTCAAGGTAAGAAATTTGCTATCCTCTCCTCAT
CAGTATTGTCTATTCATGGTATGCACctctggagagtcttctgagaactt
ttaaaattttccacccaatacgtcaattaaacaatagaaaaagtgactta
ttgatattgggtggaacaaaaacagaaaagttgcataatttcgtaaAGTC
ATtacagtggtgcatatcacgaaTAAGGTAATAGACCATTTCGATCGCAA
TGTATCATGGGTAATCAAGACAGTCAACAGAAGTCGTTATTATAGCACAA
TCAGTCATGATTACAGAAGAATCATTGCAAACCTATCATCATCTAAAGCA
ACCAGGAGATTAGATTCGATTTTACGAGCTCTTCAATGTAATGACTCCAG
ACCTAAGATGGGCCTAAGATTTTCGATTCTTTATATCGTTTCATGTATGG
CTATGAGATCAAAAGATTATTGTCCTATGGGACAAGTATACACGAGGGTT
TTCGAAACACATTTGAACAGTTGTAACTTTTAGAAAATCTTTGTATCTTG
GAAAAGTTTCAAGAATTCGACCGATGGATGATTTAACTAGTTTATGCTAT
CCTAACTAACTAGTGGTGTGTATATTTATCTTGGAAGTCTTAAGAGAACA
GTTAGATTTTATAAAATCCAGCTTAAAAAACCGTTAATGTCATAACATTC
ATAACATTGTCAATTTAAAGGGGAAGGCTTTCTCAGAtgtaaattttttg
gttttggttttaAAAGATTATGTCAGTAAACCCAGAAAATTGTAGACAAA
TTCTAAGTAGCTTACGAAGAAATTGACAAGTTTNTCATGGTATGCACctc
tggagagtcttctgagaacttttaaaattttccacccaatacgtcaatta
aacaatagaaaaagtgacttattgatattgggtggaacaaaaacagaaaa
gttgcataatttcgtaaagtcattgcagtggtgcatatcacgaaTAAGGT
AATAGACCATTTCGATCGCAATaaatcatgggtaatcaagaCAGTCAACA
GAAGTGGTTATTAGAGCACAATCAGTCATGATTACAGAAGAATCATTGCA
AACCTATCATCATCTAAAGCAACCAGGAGATTAGATTCGATTTTACGAGC
TCTTCAATGTAATGACTCCAGACCTAAGATGGGCCTAAGATTTTCGATTC
TTTATATCGTTTCATGTATGGCTATGAGATCAAAAGATTATTGTCCTATG
GGACAAGTATACACGAGGGTTTTCGAAACACATTTGAACAGTTGTAACTT
TTAGAAAATCTTTGTATCTTGGAAAAGTTTCAAGAATTCGACCGATGGAT
GATTTAACTAGTTTATGCTATCCTAACTAACTAGTGGTGTGTATATTTAT
CTTGGAAGTCTTAAGAGAACAGTTAGATTTTATAAAATCCAGCTTAAAAA
ACCGTTAATGTCATAACATTCATAACATTGTCAATTTAAAGGGGAAGGCT
TTCTCAGAtgtaaattttttggttttggttttaAAAGATTATGTCAGTAA
ACCCAGAAAATTGTAGACAAATTCTAAGTAGCTTACGAAGAAATTGACAA
GTTTAAATCCTTTTTCGTAACTTCCAGGTTTGAAGTAAAAGGGGCTCCTC
TTGAAAAAGGAGTCACGCAATTTTAAATtagcttctgaaaaatttcatcg
aatgataaaatcattaaaaatccAAGTCTTTGGTTCTTTTGACTGAAAAC
CAGGTCTTTTTAGTTANacagtggtgcatatcacgaaTAAGGTAATAGAC
CATTTCGATCGCAATGTATCATGGGTAATCAAGACAGTCAACAGAAGTCG
TTATTATAGCACAATCAGTCATGATTACAGAAGAATCATTGCAAACCTAT
CATCATCTAAAGCAACCAGGAGATTAGATTCGATTTTACGAGCTCTTCAA
TGTAATGACTCCAGACCTAAGATGGGCCTAAGATTTTCGATTCTTTATAT
CGTTTCATGTATGGCTATGAGATCAAAAGATTATTGTCCTATGGGACAAG
TATACACGAGGGTTTTCGAAACACATTTGAACAGTTGTAACTTTTAGAAA
ATCTTTGTATCTTGGAAAAGTTTCAAGAATTCGACCGATGGATGATTTAA
CTAGTTTATGCTATCCTAACTAACTAGTGGTGTGTATATTTATCTTGGAA
GTCTTAAGAGAACAGTTAGATTTTATAAAATCCAGCTTAAAAAACCGTTA
ATGTCATAACATTCATAACATTGTCAATTTAAAGGGGAAGGCTTTCTCAG
AtgtaaattttttggttttggttttaAAAGATTATGTCAGTAAACCCAGA
AAATTGTAGACAAATTCTAAGTAGCTTACGAAGAAATTGACAAGTTTAAA
TCCTTTTTCGTAACTTCCAGGTTTGAAGTAAAAGGGGCTCCTCTTGAAAA
AGGAGTCACGCAATTTTAAATtagcttctgaaaaatttcatcgaatgata
aaatcattaaaaatccAAGTCTTTGGTTCTTTTGACTGAAAACCAGGTCT
TTTTAGTTAGACTTGAATATGGAATTTTTAGGTCCCttaaacattcgaat
tacagatTAAAAAATATGGACATTTTATGAAAAGCATTGATCATTATTTA
CCTCCtaaacactgacctttatatccctggaccaagttactcaatcctGG
CGaaccaaaaatctttgatcggagtttcttttgaaattggtaccctaatg
gcgacACTACTCAAAAGCGGttaaaatgcatcgagagcgctagatctatt
TTTCcttgaatacttttgatgatgtagcgctgtTAGGCGTTAATcattaa
cattgcaatggcttcttctcgggtaccaattacaaaaaaactccgatcaa
agatggcggatatagcttggtccagggattaTAGAGGTCTGTGCTACTAA
TGCATTAATCACTGATTGCACTAACACTTATGCACATCAATCATAAACAA
CATTTCATTTTATCTAATTGGAGGATTGAAAATGGATTTTTTGTACCAAC
TTCTCTTCAGACCTCATATTAATTAGCCAAAAATTGTAATGTTGTTTATG
ATTAACTTTAGACTAGATCCTAGCCttcttaaatgaaataaatttcaaat
ggcATCCCTTTCTAATGGTCGTAATGAATCAGGAGTGATTGCTATGGTCa
caaaattgtttcaaaactttttacgAATAATCTTTTTTAGAGTGTGACTG
TCCTGGTTCATCCACGATTCATAATCATCTCAAATAGAcctatattttga
ctttttattaTTGGGTTATTCCAGGAAAAATTTGTACCCTCTATGTTGAG
GTCTTTTTGGGAAAGGTGActccctggattttttttcttccaatttttca
tgatcctcttggatttttttttctaatttttttggaccaccctgaaCTTT
CGACCttgttttactgaccaccctggatttcaacctcattttaatgacca
ccctggatttcaACCTCactttactgaccaccctggatttcaACCTCACG
TTACTGACCATccttggattttttattttccaaaccaCTCTGGACGTGAC
ACCTATACAgattatttctggaatagcccatttttTACTCTTATAGAGAG
CTTTTTAACTggaaactttcatttttttataacttttgttGGTCACGCCA
TCATTTAATTGTTTCCAACTAATAAATACTGTTTATCCCTTATCTCTTTA
TTTCTGAGAAAAAGAAGAccttaaattttgaatttaatatgatttatttt
tttcttattgtcATCAAAAACCCTTTTATTATTTGTTTTCAGCTGCAGCC
AAGGATAAGTTGATGAATGACAAAGTCCACAAGGTACGTTGCTTTGGTGT
TTCATGGTTTCCCACTCAAGAACGGCGCAATGAGGACTTTCTTTCAAGTG
ATGATGGCTTTGAAGGCATTGAAACATCCtgaagttttgaaacttttgca
GGTTTCCAAGCTTcctaaaaatccttaaaatagATTTGAATCGCCAAATT
CTCCGAAATTCCTAAAATCTTTGCATTTTGAATNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGCA
GGAATCtgaagatgacgtcattttgccaaATGAAGATGACGAAATGAGAG
GTAGTTTATTCGTTTATGATTTTCCACGTTTCCGAACTAATAAATATGAA
AATCTATGAGAACCTATTTTACCGGTCTTCACAAAAATACCATGAAAGTC
AGAGTAAAATGATATTTGCTTCAGTTAAATTGTAGTTTTAAATTGCGAGG
AAATGGCTCATTAGCGTTCTAAATCTACAGGCCTAGCAAGCGTGCAGCAA
CTTCGATTGAGGATtaaaccctattcggcctagggggggggctgtttctg
tttggaggtcaaattattggtaatagctcctgaactaatagcttttgcca
tgaatttttttgtaaattcctaacttttatttagcttcaaaataaaataa
aatttgacacctaaaaattttcacaccttgagcatgatgacgtttctgac
agtaaggtgtcacaaaaattgacactttttcaatacaaatttttttttat
gtaaaatatATCCTTTATACCGTAATTtcttgaatatttaggataaaata
agcaatttaaactcaggcaacttttttctgaagcctttgttagaatacaa
tagttatttaaaagaacaaaggaaattttcagtttttgctcactttgcgC
ATGATGagtagtgacgtcatcaaaaagattttttatcaaaagttacctta
tgtgacaaggatcttgtgtgccaaatttcacccaaaaagacccactagat
caaaagttaaggggtggtacaggaaaagacNTCGTCGACCTATTGAACCA
TGACCTTTTCAGGGGCTGCAACAAATATTCCAAATATTTGCGAGGTGCCG
AAATGATTGTTTAGGGCACTACTTTTTAGCTAGAAAGTGACTCAGAATTT
AGCTGATCAAATAAGACCATTTTAATCTCCTATTTTTTCAGTAGCCAAAG
AACAAGAGATTATCAAGCTGACACAACGTTTGATCGCTTCAATCACCATT
GGCGACTTCGAAACTTATTCGTGAGTAACATTCCACCCCACACTCCCTCC
AATTCATTttgaaatcatgaaaaatcttCCACGAACAGAGTTTCTAACTG
TATCATATTTTCCGAAATTGATGGGCTATTTTGTAGCTTTGAATTTTGAC
TGCCTTCTTAATCCACTATTGTTTTGCGTCTACTTCTTGAGACTTCCTGT
ACATGTCCGCCTTAAAAAGGGTAACCAGTCACTGTGGCCACTAAGACTAT
AGAAAAATatgatttgagatactttgaaatACTTAATttctactattcaa
taaaaactgcTTTTTCTAGGGTTCTCTCGgcatattttgaaatataaatt
cTTTAAGAAAGTTTTAGGTGGTCCCAGTCATCATTGGCCTTTCTTCTTAt
agtttttcaatattttaactGTATTGAAatctaatttctaaatttgtaaG
TAATTCAACCGGTGTTGATTTTAGAGTTGGATCTATATTAACTTTTTTTC
CGCGAAATTTTCTCTCTACTATCCTTCGTTATTCTTCGCAGGAAACTTGT
GGACTTTCGACTGACTTGCTTTGAGCCACACGGCAAAGGAAACTTAGTAG
AGGGCCTGGATTTTCACAAATACTATTTCGACAACGGTAAGCTTATCAAT
ATTCATGTTTGCGACTTCCTATAATGTCCTACTGTTTCCCttaaaatatg
aataaaaaaCATTAACAATTTGTTATCCTAGACAGGTGCCTTTTTTTTCA
ATAGTCTTTGTTAGTTATCCTTTTTGTGTACTGTATTCATTTTCACAGCC
CTTTCTTATCAAAATACCCTGTCTTTCCCCCTTCTAAATTGGCTCGAAAT
ATGGTCCCTTTTTAGCACTTTCATTTCTAGCAGgtgtattttgagttttt
tacgGGTTTAACCTTGAGAGAAATTATTCTATGAGACGTGTACTTAGCGT
CCCCCTATTTAACTTCCCTGTTTTAACGACATAAAAATGAGGGtgagaga
aaaacattttgcttaTAAATGTCCTCTAGAGATCGTCCATGTACATCTCA
CCCTTTTACGATTTTCGAGTTGATATTTGCTCGCTCAAATTAAAGCCCCT
CAATTATAGTATTAATTAAGTTGCATCAGACCTTTGGTCTGTTAATGTTT
GGAAATTTGAAATGGTcaggaattttcaaattttcccaaTTTCTGAAATT
GTCGGGAATTTTGTCTATGAAAATCAGCATCatctgaaacatttttttta
acatttctaACAGTTTTGAAACCATCGAACTCGCCTGTGAACACGACCAT
TCTCTCACCGCACGTCATTTTGCTTTCGGACGAGTCCGCGTGTATCAGTT
ACATTCGTCTCACACAAAAGATCGACCAGTAAGTCTACTCGTGTAATTTT
GTTTAACCATTTAAAGCTATCGGGGTTTTGTCTTGAGTCGGTCAGAGACT
TTATGTAAAATCTCGGGGAAAGGTGTCCACGGTTTCAACCTTCCCAGAGC
AAGAAAAGGTGACGTCCTAAGATTTTGCGCCACATTTAGAATTGCAGATT
GAATCTAGTGGCCCACTTTGTTTTCATGCcccatatttttcgaaatctta
tgatatatttgactttttatccggtgtttgtgtgaaaaccacgcgttTTG
AATGGAAAAATAGGTGGTTTCGactgcttcaccccccccccatcCAAGGG
TTGCACTTTTGGGCTTTACACATTCGGAACTATTTTGTTATACCTtgtta
cacgaatattactagtcattttattaacacgaattgaaaaatttcctgtT
AATAAAAACCatcttaattaaaaccagctgTTGTTTCCTTGAAAAGCAGA
AAAgttcgtgttaatttcagatcgtgcaaatttcaaggccgttaaatact
ACCTTCTCATTTTACAGGACATTGAACTTAAGAAAATAGACCTAGGTGAA
AATAGTTTTCACATCTGCCTTTTCTCGATCTGTTTATCTGATTTcgataa
tgatttttttgtcttGTTTGTTTTAGTAACAATCAACCGTATACCGTTCA
AAACGAAGAAACTCGTGTTTGGCAGCGTAAAGGCTCCAATTGGCTATGCG
TACATTTCCACATTAGTCGAAACACTGAAGTTACGAAACCTTGAAGTATA
GTATATGATGGAGAACCCAACCCCTCTTTCCTCCTCAAACGAAACATAaa
gtgaatttaaaaaaaacgacGTACAAAAAAAACCGCATAACCCATTTTTC
TTGTACCCCATCATACTTCTTTGGagttttggttttggtttttgtttttt
tttgttgttgccaCAAAGAGAGGAGAAAATGGATCAAGGTGTGTTAGACA
TTCGACGGAGAAATACCATGACGGAATAAGAGATtagaacaattttcaaa
aaaaaaaatNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007220XLOC_007220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012874-exon-sc0000157-1491911889:81447..81519TCONS_00012874-exon-sc0000157-1491911889:81447..81519Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:81447..81519TCONS_00012874-exon-sc0000157-1510915933:81447..81519Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:81447..81519TCONS_00012874-exon-sc0000157-1575043694:81447..81519Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:85339..85379TCONS_00012874-exon-sc0000157-1491911889:85339..85379Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:85339..85379TCONS_00012874-exon-sc0000157-1510915933:85339..85379Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:85339..85379TCONS_00012874-exon-sc0000157-1575043694:85339..85379Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:87898..87946TCONS_00012874-exon-sc0000157-1491911889:87898..87946Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:87898..87946TCONS_00012874-exon-sc0000157-1510915933:87898..87946Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:87898..87946TCONS_00012874-exon-sc0000157-1575043694:87898..87946Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:88841..88916TCONS_00012874-exon-sc0000157-1491911889:88841..88916Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:88841..88916TCONS_00012874-exon-sc0000157-1510915933:88841..88916Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:88841..88916TCONS_00012874-exon-sc0000157-1575043694:88841..88916Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:89438..89532TCONS_00012874-exon-sc0000157-1491911889:89438..89532Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:89438..89532TCONS_00012874-exon-sc0000157-1510915933:89438..89532Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:89438..89532TCONS_00012874-exon-sc0000157-1575043694:89438..89532Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:90160..90274TCONS_00012874-exon-sc0000157-1491911889:90160..90274Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:90160..90274TCONS_00012874-exon-sc0000157-1510915933:90160..90274Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:90160..90274TCONS_00012874-exon-sc0000157-1575043694:90160..90274Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1491911889:90923..91307TCONS_00012874-exon-sc0000157-1491911889:90923..91307Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1510915933:90923..91307TCONS_00012874-exon-sc0000157-1510915933:90923..91307Clytia hemisphaericaexon
TCONS_00012874-exon-sc0000157-1575043694:90923..91307TCONS_00012874-exon-sc0000157-1575043694:90923..91307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:81447..91307 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.329993	0.339686	0.518645	9.78138	9.24401	110.28	106.27	77.9352	56.1352	41.0955	51.417	15.5087	10.554	5.12964	3.3331	52.2377	70.3225	33.1744	32.4707	39.3817	34.2805	6.20947	6.83561	19.0391	16.7782	0.965115	0	2.57855	0
Blast
[Close]
BLAST of TCONS_00012874 vs. Swiss-Prot (Human)
Match: KCC2D (Calcium/calmodulin-dependent protein kinase type II subunit delta OS=Homo sapiens GN=CAMK2D PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 6.704e-49
Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:   73 AAAKDKLMNDKVHKESEDDVILPNEDDEMRAKEQEIIKLTQRLIASITIGDFETYSKLVDFRLTCFEPHGKGNLVEGLDFHKYYFDNVLKPSNSPVNTTILSPHVILLSDESACISYIRLTQKIDHNNQPYTVQNEETRVWQRKGSNWLCVHFHISRNTEV 555
            +AAK  L      KES +      ED++++A++QEIIK+T++LI +I  GDFE Y+K+ D  LT FEP   GNLVEG+DFH++YF+N L  SN P++T IL+PHV L+ D++ACI+YIRLTQ +D +  P T+Q+EETRVW R+   W  VHFH S +  V
Sbjct:  315 SAAKSLLKKPDGVKESTESSNTTIEDEDVKARKQEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYFENALSKSNKPIHTIILNPHVHLVGDDAACIAYIRLTQYMDGSGMPKTMQSEETRVWHRRDGKWQNVHFHRSGSPTV 475
The following BLAST results are available for this feature:
BLAST of TCONS_00012874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCC2D6.704e-4950.93Calcium/calmodulin-dependent protein kinase type I... [more]
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