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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012881 ID=TCONS_00012881|Name=TCONS_00012881|organism=Clytia hemisphaerica|type=transcript|length=924bp
TTCAAAAGCAATCCCTGTCCTGCAGATAAACGTTGCGTGGATAATTGTGA
TGGTCTGACCACTTGTGTATCTATTACAGTTGAATCATTGCGAGGTCACC
TTACTACAATCACCGCATCAACAGAATCGCCCAGTTGGGGATCAGCTTCA
AAAGCATTTGATGGTTCGGAGACGTCTCAATGGCATACACAAGGTGGTGC
TTCTCAAAAACATTGGATCAAGACATGCGAAACAATAACATGGACCTCTT
TACTAGCATATCTGTTGGCGGTGCACAAGATCGTTATATATGGTTTGCAA
ACACAGGTGATTTAGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGG
TATGCTGATGCTTTTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGT
CAACATTATGGAGGTATGGATTTATGGTGCCCAAGTCTAAATAAGGAATC
TGTAATCAAGAGTTTGCCAAGAGAAAATGTAAGCAAGTtttatgtacacg
tttttttataagaatagactttataagaatgtccatgatgaaaatggcca
aaaaattgaacataatgctaagaatatcaccatcatggaattttgctact
caagctaagaatgccatttttagagcatttttaattAGAAATAGTCATAC
CAAGTTAAGAATGCCATTCTTAGagtattttcaattataaatagTCATAA
TCCcaaagtaaggctcactcctttcacaaaaatcatGGTTttagcccact
tttcaggtgcccccattgaagcatggtgcccccaacgagttaggtcccct
tgagaaattACTTTGAGTTAAGTACCCCTATTCAgccgataatttttttg
aattgacactttttgttcttttgtcattcctaaaatcttaatgattttta
aatctttctaatgatgaagaagaa Run BLAST on NCBI transcript from alignment at sc0000157:144210..148883+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012881 ID=TCONS_00012881|Name=TCONS_00012881|organism=Clytia hemisphaerica|type=transcript|length=4674bp|location=Sequence derived from alignment at sc0000157:144210..148883+ (Clytia hemisphaerica)
TTCAAAAGCAATCCCTGTCCTGCAGATAAACGTTGCGTGGATAATTGTGA
TGGTCTGACCACTTGTGTATCTATTACAGTTGGTAAGGCATTATCTACAT
TAAAGTCCACTCTCGTTTGTTGGGTCGTTGGGTCTCATAGTTCCAAATAA
GGGGCTTTAGAAAAAATGGACTCTAATTCGAAATTTGCGGGGCATTCTGT
TTTTTTTGCACACTGGTTCGtgatagaaaatgaaaaaaattaaaaccaaa
cATTTTTCCCATAATGCCAACAATTTTTGCACAATTTACACCACAATTTT
GCTGTATGAATGTTCTCAAAGTAAGTAAGTCtacgaccgcagtcggaggc
gacccgaagactCCTCTTTCGGGtactctttcgatagctatctacccgaa
ggaaggggagggcgccactctttctccctgggtTGCTCCCTACTTACCCT
TGAtcattctcttaattgctgagcatcaagcagagaggcatcaagtacca
ttttgggaatctttggtatgacccggctggggctTGAACACACAACCTTg
agaaccgtagccggatggtATACCACTGCACCACGGTCGATATCTCAAAA
GACATTTAAAATGGCTTTCTATTTAGAATCATTGCGAGGTCACCTTACTA
CAATCACCGCATCAACAGAATCGCCCAGTTGGGGATCAGCTTCAAAAGCA
TTTGATGGTTCGGAGACGTCTCAATGGCATACACAAGGTGGTGCTTCTCA
AAAACATTGGATCAAGGTTCGTTTTATTTTCTGGTTACTATagctaaagg
cttggggacacaagAAGTCTTTTTCGCTTTGGTGCAATACAAagtgctcc
atcccaccaacacaagaaaaaagtgcgtgtcccatggtttctttttttgt
ttcatgggacaataAGTGagagaaatacccaaaagacacatTGATTTTGT
CCCTgagacaatggagcaaaattgattaaGTGAGAGAACTGAGAGACAAA
CAAATGTTATCAAAAGTCTTGTCGAcggatttcacttttattggtataAA
GAAGACACAAGAAAGCGTTTCAgattggtgggatggagcatgttgaattg
caccaacgcgaaaaagaCTTCTCGTGTCCCAAGCTTAACTCTTGtaaata
cacaggttgcaagaTTAAAGTCTGaaggggtttgtacttttacggtgtga
cgcgATAGGccctttttagtacggtattacgggatttgacgaaaaaagag
acgggaaaacggtattttaaaatcagacggtgacggtatttaggcaCTTT
TTTGCCCggtacaagccggtgtgacggtgttattattttttccattttcg
ggattccgggattcagcaaaagttttgacgggaaaacggtagtTTAAAAT
CAGACGGGGACGGTATTTAGGCACTTTTTTGCCCggtacaagccggtgtg
acggtgttattattttttccattttcgggattccgggattcagcaaaagt
tttgacgggaaaacggtatttcgaacccctccaacccccccccccctgaa
gacaaatcacgcttttacccaacatttttatgtgcttgttgcatgacatt
tatttctgattggttcgaaaacTAATGTTATCAGCTGTGTGTTGTAAAGT
AAGAAACATGGTAGCgaaacatgggaataaaatcacgtgaactttttcga
gtaatcacatgtttttaCTGCATTGATACagttttgcaacccgtgtattt
cAACTTCTATAGACCGCGTGGGCatatttttgtccgttttatcaATCTAA
AACCTTCCCAGTCTTTTTTCcacacctatagacaatagaaaaaaaggtgt
aaaaaaaggatcGAATCGAGTTTAGGAAGATAATTAAATATAATAAAGTC
ggacgcgcctgaccgcgcgactacggttgaAAAGATGTATTAGCGTTCGA
ATTAACAAGAAAAGTCGTTACAGTTGGTATAGTGAGGTCTACTCACAGAA
GAAGGTAAGAATGCTTCAGGTAATGATTAAATGCATGAAATACACCACAG
AGGgtttaaaattaatttcaagTAGTAGCGTTGAATTATTTCACCTGACC
ACCTGCTAGATGACCATTTCAAACTTCATTGTcctaattttgatattttg
acgaaaacgtttcacctacattttggggttTCGCTGACCATTATTTTGAG
GGTCTTTATAACCCAACATATAAAAGTCTGCAAATAACTCATAATAAGAA
AGTACAGCCTGAGatgttgacattttgagcttttacgacGGAAAGAATTA
ACGAAAGGTTACTCGATCATTACACCCCTGTGtaacagacccgctgggac
tcCCAGCCCGGACAGAAAATTTGCTTAAGCTTGAAAAGAATAGAATTCCT
TTCCTCCTTGGGACTTTGACAGAAATTTTTGTCCACACTTTGGGAAAAGG
GCTGCGAGGCAGAGGTGCTGtatttcaacacaaaattttctttttccctA
AATTAACACAAAAATTCTTCAACATCAACTACTTTTTAATTCTACATTAG
ATCTGGTTCAATATCTTAGTTGAGAACtgcaaaatttcgttgaaaacgTA
TATGAATTCATATCATTTGTTCTTGTTGTTAAAAAGCGGGCATTAATTGT
TTCactaatttatcatttttatcatctttttAAAAGGCAGAATTTCAATC
GCGTGTGTTTGTGGATTACATAGTATTCGTCAATCGATTTGAACAATTTA
TAGACATGCGAAACAATAACATGGACCTCTTTACTAGCATATCTGTTGGC
GGTGCACAAGATCGTTATATATGGTTTGCAAACACAGGTAATACAATTAC
ATTCGAGTCTACTTAACTCGAACCATAGATTTAAAACTTAGGCTAGATGG
CGTACTTTGGCTGAAAAATGTGCCGAGGTTAGgcaggaaatcctacctaa
atcacgtgacattacaatagaatttcaacgcttgaccaatcagaagcttc
gcaggttttcgaaaacaatagcggcaatattttttccgatatcaaatttt
tttgcctacAATGGCTTAAAGATCGACATCTGGATCtagatctagccctt
cgggctttataaatctacgACTCGAACACGCACAAAGGACCATAAAACTA
GTTCGAATTAAGGAagcattcgaattatagaggttcgagtaaAAGAGACt
cccgggggggcactgggtttacggactgacggtatgtgcgggccaaaaat
tggcttttaaaattgcacccttacagtgcagcaaaaatcagtgaaaatca
tacccttagagtgcattttcccccaaattttcgatccctttcgtgcaaaa
aatatggtcaaaattttggtcaaaatatctctgtttttcaagaattttct
gagatttctacccttacagtgcatctttagtttttccgacccttacagtg
cattttaaacatcttggaaaaggtacccttaggacccgcacatacccgtc
ggtccttttgcccagctgcccccccccccgggggccgGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ccccccccccccgggaagagactccattgtatcaagcatttttagatttc
ttttttagagccaaagtttaaaaaatatataatatttttaacacatccct
gtgtcacagacccggttgaTCCGCTGGAAACtttggccaaaatttcagcc
ccattggGAAATCGAATTTGATTTCAATCCATTAAAAAGTCACTTTAAAA
ATTGAACTCCTGCTCCTTTGAGATtggaataatagaatttctattccaat
gggattttgatagaaatttttgtccccgAGGGTAAAactttcaccggggc
tgtgagacaggggtgtttcatCTGAGGACATTGACCTGAATACGAGACGt
cttgaataaaaaataaaatcaaatcaatatatTTGTGCTTTTATTCATTT
TAACAGGTGATTTAGAGGGTAAAAAACGAAGAATGTTTTCGTGTATGAGG
TATGCTGATGCTTTTTATGCTGAACAACCTCAAGGTTTAAGTAACACCGT
CAACATTATGGAGGTATGGATTTATGGTGCCCAAGTCTAAATAAGGAATC
TGTAATCAAGAGTTTGCCAAGAGAAAATGTAAGCAAGTtttatgtacacg
tttttttataagaatagactttataagaatgtccatgatgaaaatggcca
aaaaattgaacataatgctaagaatatcaccatcatggaattttgctact
caagctaagaatgccatttttagagcatttttaattAGAAATAGTCATAC
CAAGTTAAGAATGCCATTCTTAGagtattttcaattataaatagTCATAA
TCCcaaagtaaggctcactcctttcacaaaaatcatGGTTttagcccact
tttcaggtgcccccattgaagcatggtgcccccaacgagttaggtcccct
tgagaaattACTTTGAGTTAAGTACCCCTATTCAgccgataatttttttg
aattgacactttttgttcttttgtcattcctaaaatcttaatgattttta
aatctttctaatgatgaagaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012881-exon-sc0000157-1491911889:144210..144291 | TCONS_00012881-exon-sc0000157-1491911889:144210..144291 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1510915933:144210..144291 | TCONS_00012881-exon-sc0000157-1510915933:144210..144291 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1575043694:144210..144291 | TCONS_00012881-exon-sc0000157-1575043694:144210..144291 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1491911889:144836..144975 | TCONS_00012881-exon-sc0000157-1491911889:144836..144975 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1510915933:144836..144975 | TCONS_00012881-exon-sc0000157-1510915933:144836..144975 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1575043694:144836..144975 | TCONS_00012881-exon-sc0000157-1575043694:144836..144975 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1491911889:146963..147046 | TCONS_00012881-exon-sc0000157-1491911889:146963..147046 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1510915933:146963..147046 | TCONS_00012881-exon-sc0000157-1510915933:146963..147046 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1575043694:146963..147046 | TCONS_00012881-exon-sc0000157-1575043694:146963..147046 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1491911889:148266..148883 | TCONS_00012881-exon-sc0000157-1491911889:148266..148883 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1510915933:148266..148883 | TCONS_00012881-exon-sc0000157-1510915933:148266..148883 | Clytia hemisphaerica | exon |
| TCONS_00012881-exon-sc0000157-1575043694:148266..148883 | TCONS_00012881-exon-sc0000157-1575043694:148266..148883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:144210..148883 + |
Blast
The following BLAST results are available for this feature:
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