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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012883 ID=TCONS_00012883|Name=TCONS_00012883|organism=Clytia hemisphaerica|type=transcript|length=2149bp
tttttgtctatttttagtaatgcaggatttttTAGATAAATCCCCTCGAA
CGATCACTTGTTCGACGcccccacttgttcgacaataatTGTCAAACAAG
TGCAAGTGGGCGTCGAGCATGTGggtgtcgaacaagtgggttacAAGAGT
GGGTTGTCGATATTTTAcgaatttgtcgaacaagtgAGTTGTCGAACAAA
TGGGTTGTCGAACATGTGACATATCACCAGAAAAAGGTCTGGCATCGCAT
TTGTCTGATGTCAAAAATTTGCGTATGTAGattacaaaatataaacaatG
ATTGAATGTACACCCCATGTAGTCAATATCTTTACACAAATAAACCTAAT
TTGTATTTAAAAACCTATTTCCCAAGGAGCAACAAGCCATTAAGTCTAAA
CATCCAAAATACGTTACAAAAATAACGACCGGGCAAAATCCAACCAAACT
TTTCCAAATAAGAAtttgcgaaatcgaaagtagATTTTGTAAACATGTGG
GTTTCTAGACTTACGGTCTCCGAACAAGAGTAATGGGAGAAAACTGTATG
TTTCTTTTCCAAGACAATTTTTTTCGGTGACGGCATTTCGGGAGTCAATA
TATTTTCCATCAATTTAAACCCCTCTAATTCTTTTTCGACCCGTAAACAC
AAGAGGGTTCACAAAACCATGGCGGTTGGCAAAAACAAGAGACTTTCCAA
AGGAAAGAAAGGAACCAAAAAGAAGATCATAGATCCCTTTGCAAAGAAAG
ACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAACATTGGC
AAAACACCAGTAACCAGAACTATTGGAACAAAAATTGCATCTGATGCCTT
GAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACAATGATGAAG
TTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAAGGCAGAAAT
GTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAAATTAAGATC
ACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTGATGTCAAAA
CCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTCACCAAGAAG
AGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAACCCAAATAAG
AGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAGTTACCACCA
AAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGCATGGGTGCT
GATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGACTGTTACAT
TCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGGTAAGAATTTTT
TTAGGTTGAGCAGTAATTCTTGAAATAAACTGTCAGCCATTCCAACAACC
ACCGATGTTTGATAATACATTGTTGGCTGGTAGTTTGGCAAGATCAGCAG
CCCATTTAAAACCCATGAAAGCTTTGCTCTTGTGGATCCTGTCTTGGGCA
ACATTTCTTCTTTTGAAAAGTTTCCTCTCTTCTGTCATCGCTTAAAAATC
TACTTAAACCTGGAAGTCACAAGTGTGTCAAGTTTAACGTCCTGTATTTA
CTGCTGTGCGTCTGGCTGGGCTTAGCAAATGTGATAGTGAAAGGAGTGTT
AAGTGTTATTTCTCACACAAGCTCTAGAATGCTCTTTGGTAGTGATAAAT
AAATTTAGATATTGCATAGTTGCAGGATTCCCTTGATGACCTACATGTCA
TTAATGGGCCAGTCTCTGTGCAAGAGCAATCCCATGTAACAAGTACcaac
ttcattttttccataAATGGCGTTGTCAAGATTACCATACAACCAAATTC
TTTGTTAAGTCATTATTCGTGATTACTATTTAGTTATTTTTGTTCAACTA
ACAAGTCTCTTGACTTAGCCATTCTAACAACCACTTGTTCTATCAAAGTG
TTCAAGTAGCTGGTAGTTTGGCAATATCATTTAAGCTCATTTAAAACCCA
TGAGGGTGATTTTATGAAGCCTTTGTCTTGGGAAACATCCTGAGTAATTT
GTTATATGCCTCCTGCAGGAAATTTGTGGTACAGCCTACTTTTTATAAGT
TGTTTCATGAAACACTGCAGACCATAGACTTGTTAGTTTTTACGTGGAG Run BLAST on NCBI transcript from alignment at sc0000157:262994..266951+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012883 ID=TCONS_00012883|Name=TCONS_00012883|organism=Clytia hemisphaerica|type=transcript|length=3958bp|location=Sequence derived from alignment at sc0000157:262994..266951+ (Clytia hemisphaerica)
tttttgtctatttttagtaatgcaggatttttTAGATAAATCCCCTCGAA
CGATCACTTGTTCGACGcccccacttgttcgacaataatTGTCAAACAAG
TGCAAGTGGGCGTCGAGCATGTGggtgtcgaacaagtgggttacAAGAGT
GGGTTGTCGATATTTTAcgaatttgtcgaacaagtgAGTTGTCGAACAAA
TGGGTTGTCGAACATGTGACATATCACCAGAAAAAGGTCTGGCATCGCAT
TTGTCTGATGTCAAAAATTTGCGTATGTAGattacaaaatataaacaatG
ATTGAATGTACACCCCATGTAGTCAATATCTTTACACAAATAAACCTAAT
TTGTATTTAAAAACCTATTTCCCAAGGAGCAACAAGCCATTAAGTCTAAA
CATCCAAAATACGTTACAAAAATAACGACCGGGCAAAATCCAACCAAACT
TTTCCAAATAAGAAtttgcgaaatcgaaagtagATTTTGTAAACATGTGG
GTTTCTAGACTTACGGTCTCCGAACAAGAGTAATGGGAGAAAACTGTATG
TTTCTTTTCCAAGACAATTTTTTTCGGTGACGGCATTTCGGGAGTCAATA
TATTTTCCATCAATTTAAACCCCTCTAATTCTTTTTCGACCCGTAAACAC
AAGAGGGTTCACAAAACCATGGCGGTTGGCAAAAACAAGAGACTTTCCAA
AGGAAAGAAAGGAACCAAAAAGAAGATGTAAGACCGAAATTTGTTTCTTC
TAGTATTGCTTGATAATATGGCTGCTAGTACACATTTCCACATTCACCCG
ACACTTGTGATTGGTGCGATAATAGTGGATATTGTTTATGGTTATACTTG
ACAAATACTTCGGCTTTCTCTTTTCAGCATAGATCCCTTTGCAAAGAAAG
ACTGGTATGATGTAAAAATTCCATCAAACTTCAATGTGAGGAACATTGGC
AAAACACCAGTAACCAGAACTATTGGAACAAGTAAGTATTTACCTTGTGA
GTTTGTTATTGTTGACTTAATTTTGAGGCTCAAGAGCTTGAAAGTTAGTT
GGGACCATCACTGGATGTACAATTCCTGACAAGCTTTCCTAACCTGCTGA
ATACAAATCTAAGTCTAATATATTTCTCATTTGGCTTACTACGGGACATA
GTTCTTCATTCGCATAGCTGCAGGATTCCCTTGATTATCCAACCTGTATG
ATCTAAAGGGCCAGTCTCTATGCTAGAGTAAAGTTGATAGATACCAGTTC
TATGTATTCTAGTTACTAGTACTGTTTACGTCAACTACACCATCAGTCTT
GGGAATTTAATAAGATGTCAAAAATCTAGATATCATATAAAGGGCTGCTT
CATGGAAAATTATTCATTGGTATTGACTACTTCAGGTTTATATACTTTCG
CAAGTAGAAATTTTTGTGAGAacagaaaattgcaaaatttaccAGTTTAC
CAGTTCTGTTTACATCAACTACACCATATGAGTTTGTTATTGTTGACTTA
ATTTTGAGGCTCTAGAGCTTGGAAGTTTGTTGGGATCATCATTGGTTGTA
CCATTCCTGGCAAGCTTTCCATTCCTAACCTGCATGTTCAAATTTAAGTC
TAATATTTTTTCATCTGGGTTACTACGGGACATAGTTCTTCATCTGCATA
GCTGCAGGATTCCCTTGATTATTCTACCTTTATAATCTAAGGGCCAGTCT
CTATGCTAGAGTAAAGTTGATAGATACCAGTTCTATGTATTCTAGTTACT
AGTACTGTTTACGTCAACTACACCATCAGTCTTGGGAATTTAATAAGATG
TCAAAAATCTAGATATCAATATAAAGGGCTGCTTCATGGAAAATTATTCA
TTGTATTGACTACTTCAGGTTTACATACTTTCGCAAGTAGAAATTTTTGT
GAGAacagaaaattgcaaaatttaccagtatggatttcgtgtaactaacg
ctgaagatcaatttttagctttcctttggctaaatttgctttcgctcGCT
TACGCTCCCGTCAATTTTATGTATTAATcatgttggcgcatgcgcctctt
ttcccatcttgcacccttattgaaaaatttaattttggtacaaaagaaat
tttgcttggcttGAGGCTTGCTGTATGGAAAAATATCTTCAGCTCGAGAT
TTGAGGAATCCATACTGGAAAATTTACAAcatttatttttgcaaatttga
ggaaaatttatttttgccatCATTGACTTCTGAGTCATTATGtcaaaaaa
taaggtaaaaaaaatgctaaaaatattttacatttgttacaatttagaag
ttttgtaaattttcaagaatttttaacGAGTAAAACTTAGGGAATTGCCC
TATTAAGAATTTTCAATTATATTAACTTTAAGGAAAAAGgccaaatttcg
tgaaaatgcTTTTAGTAACTGGAATTCTGAGGCAAGCCTAGACGATGATC
ACATTGTGAAAAAGGCTTGGAAACAACTTAAGCTGTTTCAGTTAACCTCT
TTGGAAAGTTTAAAAGTAACTTagtaaaattttgttgataCCACTGAAAA
GTTCTCAGAAATTGAATAGACAAATACTTGTGACCACTGATTTAATGAAA
AGGATAACTTAAACTTATTTCAGTCTGCTTACCTTTTCAGAAATTGCATC
TGATGCCTTGAAAGGACGTGTTTTTGAAATGGCCCAAGCTGATTTGAACA
ATGATGAAGTTTCCTTCAGAAAATACAGATTGATGGTTGAAGATGTTCAA
GGCAGAAATGTTATGACCAATTTCCATGGTATGTCAATGACCACTGATAA
ATTAAGATCACTTGTCAAGAAATGGCAAACATGCATTGAAGCCCATACTG
ATGTCAAAACCACTGATGGATATTTATTAAGATTCTTTGCCATTGGCTTC
ACCAAGAAGAGAAATAACTCAACAAAGAAAACAGCATATGCTAAATCAAC
CCAAATAAGAGCCATCAGAAAGAAGATGGTTGAGATCATGAGTCGTGAAG
TTACCACCAAAGATTTAAAAGATGTTGTCACCAAACTTTTGCCAGACAGC
ATGGGTGCTGATATGGAGAAATCTTGCCAAAGCATCTATCCACTTCATGA
CTGTTACATTCGTAAAGTAAAAGTATTGAAGAAACCTAAATTTGATGGTA
AGAATTTTTTTAGGTTGAGCAGTAATTCTTGAAATAAACTGTCAGCCATT
CCAACAACCACCGATGTTTGATAATACATTGTTGGCTGGTAGTTTGGCAA
GATCAGCAGCCCATTTAAAACCCATGAAAGCTTTGCTCTTGTGGATCCTG
TCTTGGGCAACATTTCTTCTTTTGAAAAGTTTCCTCTCTTCTGTCATCGC
TTAAAAATCTACTTAAACCTGGAAGTCACAAGTGTGTCAAGTTTAACGTC
CTGTATTTACTGCTGTGCGTCTGGCTGGGCTTAGCAAATGTGATAGTGAA
AGGAGTGTTAAGTGTTATTTCTCACACAAGCTCTAGAATGCTCTTTGGTA
GTGATAAATAAATTTAGATATTGCATAGTTGCAGGATTCCCTTGATGACC
TACATGTCATTAATGGGCCAGTCTCTGTGCAAGAGCAATCCCATGTAACA
AGTACcaacttcattttttccataAATGGCGTTGTCAAGATTACCATACA
ACCAAATTCTTTGTTAAGTCATTATTCGTGATTACTATTTAGTTATTTTT
GTTCAACTAACAAGTCTCTTGACTTAGCCATTCTAACAACCACTTGTTCT
ATCAAAGTGTTCAAGTAGCTGGTAGTTTGGCAATATCATTTAAGCTCATT
TAAAACCCATGAGGGTGATTTTATGAAGCCTTTGTCTTGGGAAACATCCT
GAGTAATTTGTTATATGCCTCCTGCAGGAAATTTGTGGTACAGCCTACTT
TTTATAAGTTGTTTCATGAAACACTGCAGACCATAGACTTGTTAGTTTTT
ACGTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012883-exon-sc0000157-1491911889:262994..263720 | TCONS_00012883-exon-sc0000157-1491911889:262994..263720 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1510915933:262994..263720 | TCONS_00012883-exon-sc0000157-1510915933:262994..263720 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1575043694:262994..263720 | TCONS_00012883-exon-sc0000157-1575043694:262994..263720 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1491911889:263871..263974 | TCONS_00012883-exon-sc0000157-1491911889:263871..263974 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1510915933:263871..263974 | TCONS_00012883-exon-sc0000157-1510915933:263871..263974 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1575043694:263871..263974 | TCONS_00012883-exon-sc0000157-1575043694:263871..263974 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1491911889:265634..266951 | TCONS_00012883-exon-sc0000157-1491911889:265634..266951 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1510915933:265634..266951 | TCONS_00012883-exon-sc0000157-1510915933:265634..266951 | Clytia hemisphaerica | exon |
| TCONS_00012883-exon-sc0000157-1575043694:265634..266951 | TCONS_00012883-exon-sc0000157-1575043694:265634..266951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:262994..266951 + |
Blast
BLAST of TCONS_00012883 vs. Swiss-Prot (Human)
Match: RS3A (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2) HSP 1 Score: 325.479 bits (833), Expect = 3.849e-105 Identity = 147/215 (68.37%), Postives = 179/215 (83.26%), Query Frame = 3
Query: 726 IIDPFAKKDWYDVKIPSNFNVRNIGKTPVTRTIGTKIASDALKGRVFEMAQADLNNDEVSFRKYRLMVEDVQGRNVMTNFHGMSMTTDKLRSLVKKWQTCIEAHTDVKTTDGYLLRFFAIGFTKKRNNSTKKTAYAKSTQIRAIRKKMVEIMSREVTTKDLKDVVTKLLPDSMGADMEKSCQSIYPLHDCYIRKVKVLKKPKFDGKNFFRLSSNS 1370
++DPF+KKDWYDVK P+ FN+RNIGKT VTRT GTKIASD LKGRVFE++ ADL NDEV+FRK++L+ EDVQG+N +TNFHGM +T DK+ S+VKKWQT IEAH DVKTTDGYLLR F +GFTKKRNN +KT+YA+ Q+R IRKKM+EIM+REV T DLK+VV KL+PDS+G D+EK+CQSIYPLHD ++RKVK+LKKPKF+ L
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG 235
The following BLAST results are available for this feature:
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