TCONS_00012885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012885
Unique NameTCONS_00012885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012885 ID=TCONS_00012885|Name=TCONS_00012885|organism=Clytia hemisphaerica|type=transcript|length=587bp
TTACCATCaatgaatttaaaattgaataacatttatgaaattgaagttta
tttagataaaatttacaaaaatgccTGAAAGAATTGTTGATTCAGCATTC
CCTCCAGAATTGGATGCATACATAGATCTATCTGAAAAATTAGGAGAAGG
TGGGTTCGCAGAAGTGCATCTAGCAGAACACAGGCCAACTGGTATGAAGG
TTGCCATCAAAGTAATGAGTAAAGCCAACCTTAAAAGTATGGGCGATCTC
CATAGAGCATATCGTGAAATTGATGCAATGAAGAGATTGGGAAGTCATCA
ACATGTCTGTCAGTTGTACCAAGTtgttgaaaatgatgaaaatatctACC
TTGTCTTGGAGCATATATCTGGTGGGGAATTGTTCGATTATATTGTTTCC
AGAGAAAAGTTATCGGTAAACTTTAACCCTActgctagacgactaattat
CCAACTTCTCTAAAAGCTTGTTTCTTTTATTGGATTTTATTGGTTTGAAG
TTATTGAataacaacatttttcaacGTTGACAATGAGGGCATTAGAGGCC
AGCAATGGTTCAAAGTTTCAagataataaaaagaaaa
Run BLAST on NCBI

protein sequence of TCONS_00012885-protein

>TCONS_00012885-protein ID=TCONS_00012885-protein|Name=TCONS_00012885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MPERIVDSAFPPELDAYIDLSEKLGEGGFAEVHLAEHRPTGMKVAIKVMS
KANLKSMGDLHRAYREIDAMKRLGSHQHVCQLYQVVENDENIYLVLEHIS
GGELFDYIVSREKLSVNFNPTARRLIIQLL
Run BLAST on NCBI

transcript from alignment at sc0000157:283175..286774+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012885 ID=TCONS_00012885|Name=TCONS_00012885|organism=Clytia hemisphaerica|type=transcript|length=3600bp|location=Sequence derived from alignment at sc0000157:283175..286774+ (Clytia hemisphaerica)
TTACCATCaatgaatttaaaattgaataacatttatgaaattgaagttta
tttagataaaatttacaaaaatgccTGAAAGAATTGTTGATTCAGCATTC
CCTCCAGAATTGGATGCATACATAGATCTATCTGAAAAATTAGGAGAAGG
tacattttttgtatttttgtttctCAAAATAAGGTTCCTCTTCTAATTGA
AATGTAGCCATTTCATGAGTTacttaatattaaaaaaattaacaaaattc
tttcaatgtTTATGTAAAGAGGgatagaaagaaagaaatcacAGATTGCA
TCCAAAAACTGCTCTTCCCTACTCTGCTCGATGTGTGGCGTGGTCCAATT
TTCCCCAGTTAATTAACATTTGTGATGAGTATCTCTTGTCTGCAGCAATA
GTCTTCATGAACAAGTTGAGCTTTGTATTGTTTTCTTCAGATGAATCTTT
TTTCGTTGGGCTATGATAGAGACATGCAAAAGCTAACAAATCGTTGTCAG
TAAGACAGACTTTAAATCGTACAGGCCTGCTCAAACTGCACTggtgatat
ttaaaaaaatcaaatgctTGATGGAGTCGTGTGCTAATATTATAATACCG
CATACTATATATGTATCTGCATTTGTATGGTTGACTGGTGTGTACTCACA
AAATTCGTATTTGTACACATATTTTAGCCCACCtaccttttttttgactt
caCGGATTGCAATGGTATGCGGCTTCTCTTTCTGACTGCGCATAGATTTG
TAGTTTGTTTATCTTCTCAGGTGTAAGTTGGTCTGCATTGGTGTACATGA
TTTTTATGTCCTTCacaagtttctttttttctttggatATGTTGGACATC
AGACAATTCAGTGGAATGTTGTGTTGTcggttattttctttttttgcttt
tgttgtATGTcgttgttttcaatttttccttctttttcttctttttttgt
ttttttcaacagTTGCCATGGTTTCAGCCCTCCCTTAAAAATGTTTCGAT
CGGCTATGAAAGAAAAGTTAATTGCCCTAACTGATTTTTTAGGCATGTCA
GACAGCTACACCTTTTTATATAACTAAAACCTCTGCATTTTATTGTCTGA
AATAGtttttttggattgaaattTTGCTAATAATAAAGTGTggtaggtat
tacaaagtgtgtcaaGTTGTATTACAAAGAGTGACGTTTTTACAAAGGAT
GCAAGTATAAACTCCTCTATCTGGTTTGCACACCGGGGGCCCTGTCTGTA
AGAAATTCAATGTTCCAATCTTATATTGAAGACAAATCACATtctcaaaa
gcaaaaaaatgcaaggGGTATATTAGAAAGACAGAACAAGATTTACGGGA
GGATTAGGAAATAAGGTTGAGGATTAGGAAATAAGGGCACATTACATATG
GAATTCCAAATTGAGGGGGGAGAAATGGATAAGGGGTAATTTGCTGTTTA
AGGGGGGACTGGAAAACATGGATGAAACCATGGTTGCTTTTACTGGTGTT
GTTGAAGGTTGGTGACCTTTACCTTCCTGACGTCGAAACTGTTTTTTGAA
GACCCACAAAGTCTAAATATTAAATCTGTTTTCCCTTTGTTCCGTTCGAT
TAAGTCTATTGCTTGCGCAACCAGGTCTTTATACTTTTTCCAATATGATC
TGGAGTCAGGTCTTCACATACACTCATCTCTTTTTACGTGTTCAGGCAAA
TTTCCAGGGCTTTGAGCTGCTACTGTTTCTATTTCAAAGATTGAGTTTGA
ATTCAGTTCGAAGAACAAAATATTCAACCCAGGCTCTGTTTTTAATTAGT
TGGGAACTATTAAAACAAAGAATTAACCTCAGAATGGGCTTTTTCTGTTA
ATAAGGGCCTAggacatcaaatttttgtcaTGATTCTCATGGCTCATGTA
CAAAAATTAGGATTGAGTTTTAAAATTCAAGCAAAGATTGAGTTCCTGCC
ACCGTCATCCGGTAGCAGAAAAGGCCTGGAAATTTGCCTGGCTGTTATTT
CCCTTAAGAGCACTGAGGTTATCAAAGATGATCTCTTTTTCCTTCTGGCT
ACCCAACGAGTCTTTCCTGCAGATTTCGATCCGAGTCTAAACAATTGTTT
GATGCTCACTTTTGCCCAAAGATTTTGAATGAGCTTCTTCACATACTCTT
AATCATGCTTGAATGCATCTTCAGCTAGTTCTTCAGCCCCATGGATTATg
atgtttgttgtttgttgatGTTTTGTTGATTAAAGTCAGCCAACAACTGA
AATTCTATACAATTCTTGCATAATTTTAAGCTGAAAAGCTTTAGAAACCT
TTGTGGTTGAAAGGCCATAAACTNCTGAAATTCTATACAATTCTTTCATA
ATTTTAAGCTGAAAAGCTTTAGAAACCTTTGTGGTTGAAAGGCCATAAAC
TTAATTAAATGAACATAGTTTAGAGCCAATATAACTGCAAAACCTTATGA
GTGTTATATGTATCTCAGGCTAAATCATTATgaggtttttattaaaaacg
atttttgttttatttactttttatgcGCAGGTGGGTTCGCAGAAGTGCAT
CTAGCAGAACACAGGCCAACTGGTATGAAGGTAAACAGACTTTTTGTAAA
AAGCTCTTGTGAGAATATTGCATCAGTTAACAATAATCCATTTTAAGAAT
ATAGCCTGCATTGCAAGGACAAAATTCTAGAAAAATGGCCAATCATGGTG
TTATTCTGTTAGCGAGGTGaacaaaatgtaaataaaaaagggaaaaaata
atcatggattaaaaaataattatggATTATTTACTTTAATCAATGGACTG
ATATATCAAGAAATGACTTGGTCATTTTTTATCTCAATTATAATGTTTTT
CAGGTTGCCATCAAAGTAATGAGTAAAGCCAACCTTAAAAGTATGGTATG
TAAATTTGTTAATTGTAGATTTTGGTAGATTTTAGGAGATAATTCTTCGT
TTGCAATCTATTGTGGATTTATCTCATGGTTGTGCCAAAAGAAACATTCT
CATTGCCGAAACCCATTTTTATACGTGTTTAGTGTTGTGAATACGATTTG
GTTTAAATCTGGCATGATGTCATCGAAATTTTGATTCTAGGGCGATCTCC
ATAGAGCATATCGTGAAATTGATGCAATGAAGAGATTGGGAAGTCATCAA
CATGTCTGTCAGTTGTACCAAGTtgttgaaaatgatgaaaatatctACCT
TGTCTTGGAGGTAAGTTGGAGTTTTAACAAGATTATCTGAACAAGATTAT
CTGAACAATTCCATGATTTTCTCAACTAATAGGATTCAGGAAGTTATTCT
AAAAACCAGCTGACTTTGCCCAAGCTGagtattttcatagttttaaaaag
tgtttcttAATTTCTCTCTTTTAGCATATATCTGGTGGGGAATTGTTCGA
TTATATTGTTTCCAGAGAAAAGTTATCGGTAAACTTTAACCCTActgcta
gacgactaattatCCAACTTCTCTAAAAGCTTGTTTCTTTTATTGGATTT
TATTGGTTTGAAGTTATTGAataacaacatttttcaacGTTGACAATGAG
GGCATTAGAGGCCAGCAATGGTTCAAAGTTTCAagataataaaaagaaaa

Coding sequence (CDS) from alignment at sc0000157:283175..286774+

>TCONS_00012885 ID=TCONS_00012885|Name=TCONS_00012885|organism=Clytia hemisphaerica|type=CDS|length=1965bp|location=Sequence derived from alignment at sc0000157:283175..286774+ (Clytia hemisphaerica)
atgccTGAAAGAATTGTTGATTCAGCATTCCCTCCAGAATTGGATGCATA
CATAGATCTATCTGAAAAATTAGGAGAAGGTGGGTTCGCAGAAGTGCATC
TAGCAGAACACAGGCCAACTGGTATGAAGGTTGCCATCAAAGTAATGAGT
AAAGCCAACCTTAAAAGTATGGGCGATCTCCATAGAGCATATCGTGAAAT
TGATGCAATGAAGAGATTGGGAAGTCATCAACATGTCTGTCAGTTGTACC
AAGTtgttgaaaatgatgaaaatatctACCTTGTCTTGGAGCATATATCT
GGTGGGGAATTGTTCGATTATATTGTTTCCAGAGAAAAGTTATCGGTAAA
CTTTAACCCTActgctagacgactaattatCCAACTTCTCTAAatgccTG
AAAGAATTGTTGATTCAGCATTCCCTCCAGAATTGGATGCATACATAGAT
CTATCTGAAAAATTAGGAGAAGGTGGGTTCGCAGAAGTGCATCTAGCAGA
ACACAGGCCAACTGGTATGAAGGTTGCCATCAAAGTAATGAGTAAAGCCA
ACCTTAAAAGTATGGGCGATCTCCATAGAGCATATCGTGAAATTGATGCA
ATGAAGAGATTGGGAAGTCATCAACATGTCTGTCAGTTGTACCAAGTtgt
tgaaaatgatgaaaatatctACCTTGTCTTGGAGCATATATCTGGTGGGG
AATTGTTCGATTATATTGTTTCCAGAGAAAAGTTATCGGTAAACTTTAAC
CCTActgctagacgactaattatCCAACTTCTCTAAatgccTGAAAGAAT
TGTTGATTCAGCATTCCCTCCAGAATTGGATGCATACATAGATCTATCTG
AAAAATTAGGAGAAGGTGGGTTCGCAGAAGTGCATCTAGCAGAACACAGG
CCAACTGGTATGAAGGTTGCCATCAAAGTAATGAGTAAAGCCAACCTTAA
AAGTATGGGCGATCTCCATAGAGCATATCGTGAAATTGATGCAATGAAGA
GATTGGGAAGTCATCAACATGTCTGTCAGTTGTACCAAGTtgttgaaaat
gatgaaaatatctACCTTGTCTTGGAGCATATATCTGGTGGGGAATTGTT
CGATTATATTGTTTCCAGAGAAAAGTTATCGGTAAACTTTAACCCTActg
ctagacgactaattatCCAACTTCTCTAAatgccTGAAAGAATTGTTGAT
TCAGCATTCCCTCCAGAATTGGATGCATACATAGATCTATCTGAAAAATT
AGGAGAAGGTGGGTTCGCAGAAGTGCATCTAGCAGAACACAGGCCAACTG
GTATGAAGGTTGCCATCAAAGTAATGAGTAAAGCCAACCTTAAAAGTATG
GGCGATCTCCATAGAGCATATCGTGAAATTGATGCAATGAAGAGATTGGG
AAGTCATCAACATGTCTGTCAGTTGTACCAAGTtgttgaaaatgatgaaa
atatctACCTTGTCTTGGAGCATATATCTGGTGGGGAATTGTTCGATTAT
ATTGTTTCCAGAGAAAAGTTATCGGTAAACTTTAACCCTActgctagacg
actaattatCCAACTTCTCTAAatgccTGAAAGAATTGTTGATTCAGCAT
TCCCTCCAGAATTGGATGCATACATAGATCTATCTGAAAAATTAGGAGAA
GGTGGGTTCGCAGAAGTGCATCTAGCAGAACACAGGCCAACTGGTATGAA
GGTTGCCATCAAAGTAATGAGTAAAGCCAACCTTAAAAGTATGGGCGATC
TCCATAGAGCATATCGTGAAATTGATGCAATGAAGAGATTGGGAAGTCAT
CAACATGTCTGTCAGTTGTACCAAGTtgttgaaaatgatgaaaatatctA
CCTTGTCTTGGAGCATATATCTGGTGGGGAATTGTTCGATTATATTGTTT
CCAGAGAAAAGTTATCGGTAAACTTTAACCCTActgctagacgactaatt
atCCAACTTCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007227XLOC_007227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012885-exon-sc0000157-1491911889:283175..283323TCONS_00012885-exon-sc0000157-1491911889:283175..283323Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1510915933:283175..283323TCONS_00012885-exon-sc0000157-1510915933:283175..283323Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1575043694:283175..283323TCONS_00012885-exon-sc0000157-1575043694:283175..283323Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1491911889:285705..285754TCONS_00012885-exon-sc0000157-1491911889:285705..285754Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1510915933:285705..285754TCONS_00012885-exon-sc0000157-1510915933:285705..285754Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1575043694:285705..285754TCONS_00012885-exon-sc0000157-1575043694:285705..285754Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1491911889:286028..286069TCONS_00012885-exon-sc0000157-1491911889:286028..286069Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1510915933:286028..286069TCONS_00012885-exon-sc0000157-1510915933:286028..286069Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1575043694:286028..286069TCONS_00012885-exon-sc0000157-1575043694:286028..286069Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1491911889:286265..286384TCONS_00012885-exon-sc0000157-1491911889:286265..286384Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1510915933:286265..286384TCONS_00012885-exon-sc0000157-1510915933:286265..286384Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1575043694:286265..286384TCONS_00012885-exon-sc0000157-1575043694:286265..286384Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1491911889:286549..286774TCONS_00012885-exon-sc0000157-1491911889:286549..286774Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1510915933:286549..286774TCONS_00012885-exon-sc0000157-1510915933:286549..286774Clytia hemisphaericaexon
TCONS_00012885-exon-sc0000157-1575043694:286549..286774TCONS_00012885-exon-sc0000157-1575043694:286549..286774Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012885-proteinTCONS_00012885-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:283175..286774 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.0818	76.7893	136.343	136.094	8.85995	4.90087	8.44671	8.81145	14.5528	18.7117	14.2634	13.4392	11.4855	10.372	15.4555	17.0437	26.633	19.0653	7.28332	8.4567	11.5247	13.4116	34.7593	31.9926	27.3085	22.2138	8.36523	5.90595	20.0013	26.534
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00012885 vs. Swiss-Prot (Human)
Match: MELK (Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.222e-25
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 2 
Query:  107 ELDAYIDLSEKLGEGGFAEVHLAEHRPTGMKVAIKVMSKANLKSMGDLHRAYREIDAMKRLGSHQHVCQLYQVVENDENIYLVLEHISGGELFDYIVSREKLS 415
            EL  Y +L E +G GGFA+V LA H  TG  VAIK+M K  L S  DL R   EI+A+K L  HQH+CQLY V+E    I++VLE+  GGELFDYI+S+++LS
Sbjct:    6 ELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGS--DLPRIKTEIEALKNL-RHQHICQLYHVLETANKIFMVLEYCPGGELFDYIISQDRLS 105
The following BLAST results are available for this feature:
BLAST of TCONS_00012885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MELK1.222e-2554.37Maternal embryonic leucine zipper kinase OS=Homo s... [more]
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