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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012886 ID=TCONS_00012886|Name=TCONS_00012886|organism=Clytia hemisphaerica|type=transcript|length=1736bpRun BLAST on NCBI protein sequence of TCONS_00012886-protein >TCONS_00012886-protein ID=TCONS_00012886-protein|Name=TCONS_00012886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp QADIWSLGVVLYGLLNGFLPFDIEEDEPTYLLYDKIKLGEFEVPDWLSQGRun BLAST on NCBI transcript from alignment at sc0000157:289982..298366+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012886 ID=TCONS_00012886|Name=TCONS_00012886|organism=Clytia hemisphaerica|type=transcript|length=8385bp|location=Sequence derived from alignment at sc0000157:289982..298366+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:289982..298366+ >TCONS_00012886 ID=TCONS_00012886|Name=TCONS_00012886|organism=Clytia hemisphaerica|type=CDS|length=16338bp|location=Sequence derived from alignment at sc0000157:289982..298366+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012886 vs. Swiss-Prot (Human)
Match: MELK (Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK PE=1 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 2.630e-25 Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 3
Query: 3 QADIWSLGVVLYGLLNGFLPFDIEEDEPTYLLYDKIKLGEFEVPDWLSQGSLKMLNRLLTVNPEARVTTKDLLAHPWLSEGYGNPVEYKSPLSKEKLEPRIVEELADYYHSENDGSMSQLVKEFQYD 383
+AD+WS+G++LY L+ GFLPFD D+ LY KI G+++VP WLS S+ +L ++L V+P+ R++ K+LL HPW+ + Y PVE++S L+ V EL+ +H N +M L+ +QYD
Sbjct: 189 EADVWSMGILLYVLMCGFLPFD---DDNVMALYKKIMRGKYDVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNHPWIMQDYNYPVEWQSKNPFIHLDDDCVTELS-VHHRNNRQTMEDLISLWQYD 311 The following BLAST results are available for this feature:
BLAST of TCONS_00012886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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