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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012894 ID=TCONS_00012894|Name=TCONS_00012894|organism=Clytia hemisphaerica|type=transcript|length=566bp
GAAGCTTTTTGGATGAATGATGGGACGATTATCAGTAATGAGACTGCTTT
ATTTGGTGGGAGGCATTTCCCAGCATTTGAACTTAAAGAGTTGACTTTGC
TCAGTACTGGCTTTTATCAATGTGGAGTCAAAGTTGCCGTGtctgatgaa
atcataaaatcaaaagGAGTGAATGTAACTGTCAAAGCTGTtgacattga
attcaccagtcAACCAAACTTCATAATTTCCAATCGAAGAATCCTTCTCC
AAGGATGCAAATATAAATTCAACGCTGCTCGACTCGCTCGATCAAATAGT
AATTCCTTCGCAAATGCAGCATATTACGAAATCTTAAACTCTACAGGAAT
ATTCAAACTAACATCTTTATCTCAGCCAACGCCGACGCCCTCCACTCCAC
CCCGAACAACCACCATAGGGCGGGagcaatttttaagaaaaagacGTGCT
GCTGATATTGAAGAATTGAGCGCTACTATTCCTGGTATTGATTTGACTGA
TACCTTCCAATTAAACGCGACATACAGATGTGGTGTCTTTGATCCGAGAT
ACATGCACACGCCATC Run BLAST on NCBI protein sequence of TCONS_00012894-protein >TCONS_00012894-protein ID=TCONS_00012894-protein|Name=TCONS_00012894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
EAFWMNDGTIISNETALFGGRHFPAFELKELTLLSTGFYQCGVKVAVSDE
IIKSKGVNVTVKAVDIEFTSQPNFIISNRRILLQGCKYKFNAARLARSNS
NSFANAAYYEILNSTGIFKLTSLSQPTPTPSTPPRTTTIGREQFLRKRRA
ADIEELSATIPGIDLTDTFQLNATYRCGVFDPRYMHTP Run BLAST on NCBI transcript from alignment at sc0000157:136862..138968- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012894 ID=TCONS_00012894|Name=TCONS_00012894|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at sc0000157:136862..138968- (Clytia hemisphaerica)
GAAGCTTTTTGGATGAATGATGGGACGATTATCAGTAATGAGACTGCTTT
ATTTGGTGGGAGGCATTTCCCAGCATTTGAACTTAAAGAGTTGACTTTGC
TCAGTACTGGCTTTTATCAATGTGGAGTCAAAGTTGCCGTGTCTGATGAA
ATCATAAAATCAAAAGGAGTGAATGTAACTGTCAAAGGTAATATTAAATA
TTTTTCTCTTCTTTAATTTCTCTTGTAAATCCTTTTACTTATATAGATTG
ATTTTACCACATCTAGAATGTATCCTCACTATTAAAGGTGAACCTGAACT
TTTCAGTCCAAGAGAAAAAGTTTTCGAAGCCGACGTCTTACTTTAGCAAG
GTACTAGGCAGCTTATATTTCCATCAAAGTTTTTTATTCTTTCTAATGGT
AGCTATGAGAATTCTGGAAACTTTTTTGTACCGGAGATATAGGCCATCAA
AGACTATAATAAGAAAGTTGCCAATGACGTTACAGCTAATGCTCGCCTTA
TTATGCACACTACATTTACTTAGCATAGCTAAAAACTAAACTCATGGCTC
ATTCTAGACGATCCTATCGTCTACACATTGTCACTAAAAAAGGGAATAAT
TCAGGAGGTGGGATAAATTTGAAAACGGAGTTCAGCTCGGGGCGGAGTAA
ACAGTGGCGGGGGTGTTTACAGTGTTTTGTTCTAAAACTCCACCGCCAAT
ATTTTCCTGCAAACCGCCCTGACGCCCTGACTCTGTGCATATATACTTTA
TCGGGTTTACTGACCCTCTAAACGGACGATAGCATCGTCTAGGCTCATTC
CCGAGTATTACTACTATTTCCGTTATTTGACTTATTCCCCCGATTGAGTG
TACGAAAAAATATTCATTACACAGTAATACCGCCCAATGGTGCCGTGGGA
CTGAAAGGGTTAAATGTAAATGATAATTTAGGCTTGATCACTATGAATAT
TCATGACTCTAGGGTTTTTTCATAAACGAAGGGTCTTTAAAATAAACTGT
CCATTCTCTGTTATTGTGCACTCTCTTTATTGCTAACATGTGGAAACCAA
TCTCAGGGAATCTATATATTAGTACGCTAAAACGTGTGTGTTTACAACGT
ATTATAAAAAGTTTTCGAAAATCTAACAAAGCCCTACAAAGCCTCCTCTT
CATGGTGTTGAACCATCATGTTTTTGCACCGTATGCAGATTTCCTACCAC
TAGACTAACTTTGAGACGTAAAGATATTATTTTCTATACAGGTGCCTGGG
AGGTGGATGGGTTAAATCAACCTTCTTCCCAAGTATAAATTTTCATTCTG
AAGAATTCTTATTTAGATGCTCTTTAAAACTTTATGTTTACAATAGTGGC
TCCCTATCACTTTCTAAACTTTTTAAAGTATTTCAAAGTCGCCTTCGAAT
GTCTTTCCACGATTGCTAGCCATGATGGCTAAATAGATCTAAAATATAAT
TCTTCTAAGCCATTTACTAATTGTGGTTAAAAATTGCAATGCAATATTAT
CTTTTTTCTCCTTTCTTTTATAAAGTCAAAATCTTATCATCAATCGGCAG
GTATTTTTCTTCCGTTAGAGTTTTTAGATGTGTAGTGATTCACTGGAATG
GGACACGCAGCGTGCGACGCTGCGCATACGGCTAGTTACTCTTATTATGC
TGACATGGTTTCCCTGTAATGATGATAATATATTGCTATAAAACTACTTT
GAATATTCTAACATTGTTTTATTCATAGCTGTTGACATTGAATTCACCAG
TCAACCAAACTTCATAATTTCCAATCGAAGAATCCTTCTCCAAGGATGCA
AATATAAATTCAACGCTGCTCGACTCGCTCGATCAAATAGTAATTCCTTC
GCAAATGCAGCATATTACGAAATCTTAAACTCTACAGGAATATTCAAACT
AACATCTTTATCTCAGCCAACGCCGACGCCCTCCACTCCACCCCGAACAA
CCACCATAGGGCGGGAGCAATTTTTAAGAAAAAGACGTGCTGCTGATATT
GAAGAATTGAGCGCTACTATTCCTGGTATTGATTTGACTGATACCTTCCA
ATTAAACGCGACATACAGATGTGGTGTCTTTGATCCGAGATACATGCACA
CGCCATC Coding sequence (CDS) from alignment at sc0000157:136862..138968- >TCONS_00012894 ID=TCONS_00012894|Name=TCONS_00012894|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0000157:136862..138968- (Clytia hemisphaerica)
CTGTTGACATTGAATTCACCAGTCAACCAAACTTCATAATTTCCAATCGA
AGAATCCTTCTCCAAGGATGCAAATATAAATTCAACGCTGCTCGACTCGC
TCGATCAAATAGTAATTCCTTCGCAAATGCAGCATATTACGAAATCTTAA
ACTCTACAGGAATATTCAAACTAACATCTTTATCTCAGCCAACGCCGACG
CCCTCCACTCCACCCCGAACAACCACCATAGGGCGGGAGCAATTTTTAAG
AAAAAGACGTGCTGCTGATATTGAAGAATTGAGCGCTACTATTCCTGGTA
TTGATTTGACTGATACCTTCCAATTAAACGCGACATACAGATGTGGTGTC
TTTGATCCGAGATACATGCACACGCCAGAAGCTTTTTGGATGAATGATGG
GACGATTATCAGTAATGAGACTGCTTTATTTGGTGGGAGGCATTTCCCAG
CATTTGAACTTAAAGAGTTGACTTTGCTCAGTACTGGCTTTTATCAATGT
GGAGTCAAAGTTGCCGTGTCTGATGAAATCATAAAATCAAAAGGAGTGAA
TGTAACTGTCAAAGCTGTTGACATTGAATTCACCAGTCAACCAAACTTCA
TAATTTCCAATCGAAGAATCCTTCTCCAAGGATGCAAATATAAATTCAAC
GCTGCTCGACTCGCTCGATCAAATAGTAATTCCTTCGCAAATGCAGCATA
TTACGAAATCTTAAACTCTACAGGAATATTCAAACTAACATCTTTATCTC
AGCCAACGCCGACGCCCTCCACTCCACCCCGAACAACCACCATAGGGCGG
GAGCAATTTTTAAGAAAAAGACGTGCTGCTGATATTGAAGAATTGAGCGC
TACTATTCCTGGTATTGATTTGACTGATACCTTCCAATTAAACGCGACAT
ACAGATGTGGTGTCTTTGATCCGAGATACATGCACACGCCAGAAGCTTTT
TGGATGAATGATGGGACGATTATCAGTAATGAGACTGCTTTATTTGGTGG
GAGGCATTTCCCAGCATTTGAACTTAAAGAGTTGACTTTGCTCAGTACTG
GCTTTTATCAATGTGGAGTCAAAGTTGCCGTGTCTGATGAAATCATAAAA
TCAAAAGGAGTGAATGTAACTGTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012894-exon-sc0000157-1575043694:138782..138968 | TCONS_00012894-exon-sc0000157-1575043694:138782..138968 | Clytia hemisphaerica | exon |
| TCONS_00012894-exon-sc0000157-1575043694:136862..137240 | TCONS_00012894-exon-sc0000157-1575043694:136862..137240 | Clytia hemisphaerica | exon |
| TCONS_00012894-exon-sc0000157-1510915933:138782..138968 | TCONS_00012894-exon-sc0000157-1510915933:138782..138968 | Clytia hemisphaerica | exon |
| TCONS_00012894-exon-sc0000157-1510915933:136862..137240 | TCONS_00012894-exon-sc0000157-1510915933:136862..137240 | Clytia hemisphaerica | exon |
| TCONS_00012894-exon-sc0000157-1491911889:138782..138968 | TCONS_00012894-exon-sc0000157-1491911889:138782..138968 | Clytia hemisphaerica | exon |
| TCONS_00012894-exon-sc0000157-1491911889:136862..137240 | TCONS_00012894-exon-sc0000157-1491911889:136862..137240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:136862..138968 - |
Blast
The following BLAST results are available for this feature:
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