|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012899 ID=TCONS_00012899|Name=TCONS_00012899|organism=Clytia hemisphaerica|type=transcript|length=1537bp
CGAAAATCGAACAAAACTAAACCAAATCATCAAGTTTAGTAATCTTATTT
AtccaaaaatgcattttttacaACGATCGTGAGATGTATCAATTACCAAT
TTGTGGTCGTAGTTGAAAAATTCctcaaatatttttatgaacTCCGTTAA
TCTAAAATGcggtttttttttgcatttgttAATAGCGTGATCTATTATGA
TACCATATGTTCTGGTGCCTCTTCTCCTAGAATCATATCATCATTATTAT
AGACAGTTCTAGTCAGGTGAGTCATTTTGATTGGTACAGTCTTTGAAAGA
TAACCATAATCTATGGTGAGCGAAATTTCAATATCTTGGTACAATGGGCT
TGTCGGTTTTATCGTGGTCATAAAGTCACAAGATTTTCTTAAGAcatcaa
tttgaccaaattgGCCAAGGTTTCCAAGGCTAAAGAGCTTGTCTCCCTCG
AAATCGAACAATAATTTCTGGTTAAGACCCGAAATTGACAAGAGCCTGGC
AAGATGGGTGTCATTGATTCTGTGAATAACTTTCGTGTTGTCATCCTTGG
TGCACACCAGACTGGAAAAACTGCTTTGGCAGTACGCTATCTTACGGGAA
GATTTATCGGTGACTACGCAAGTGGCATGGACACGGCTTATCAACATCAA
GAAGAAATAGCTAACCAACAAGTTTCTTTGCAAATACTTGACACTTCGGA
GAAAAAGTATTCGAAAGCTGCTTTAGCATGGGCTGACGGTGTTATTGTTA
CTTATTCAATCGTCGATCGATCAAGTCTTCAAAAAGCTAAAGAAATTCTC
GAAGAAGTTGAAAAAATCAACAACAGGAAAGTCATTCTTTTCCTAGTAGC
AACCAAAGCTGAATTGAATCAATATAGAACTGTACTTCGATACGAAGGTG
AATTACTGGCAAGAGAGTATGAAGCTACACATTTTGAACTCTCTTCTTTC
TTAGATTATAAACCTGTGAAACGTGCTTTTATAAAGTTGGTACGTAAAAT
GATGGACAGGCGaatcaaaaatgataaaattgtgGTTACTGGAAAATCAC
CAACAATGGTTTTTCGGAAGTTGTTGAACAAGTACGAAAAGAGATCTTCT
ACCATTTAAGAAGATTTGGGAAATAAAATGTTGTGAAGCGGTctaatgtt
tttaataatttgGCATTCTTATAATTAGAGCTGATAATTTACGTGGATAA
CCCAGTAATCTAAGACTTTTAGGCagtctttccattgttttcacgGGATC
CACgcccagccggctcggctacctatgaactgaacggaatgTTGGAGGGA
GCGGGGATTTCAACCGCAAATTCCTGGTTTGAGACGCCGACGCCTTTAAC
CAATGGGCCATCGCTCCTAATGTTCTTTAAAGGTCGCGCATACCATTAAT
TAGTAGTATAACAGCTTCCGATTTTACGGTTCACTTTATACCTGCTAGTT
ATTTTACCTGTTTTTAAGAGCTTTTTGTAAGTAGCATTTTTATAATGACG
ATATAGCGttgctataaaaaaaagaaattgatacCAT Run BLAST on NCBI transcript from alignment at sc0000157:169277..175938- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012899 ID=TCONS_00012899|Name=TCONS_00012899|organism=Clytia hemisphaerica|type=transcript|length=6662bp|location=Sequence derived from alignment at sc0000157:169277..175938- (Clytia hemisphaerica)
CGAAAATCGAACAAAACTAAACCAAATCATCAAGTTTAGTAATCTTATTT
ATCCAAAAATGCATTTTTTACAACGATCGTGAGATGTATCAATTACCAAT
TTGTGGTCGTAGTTGAAAAATTCCTCAAATATTTTTATGAACTCCGTTAA
TCTAAAATGCGGTTTTTTTTTGCATTTGTTAATAGCGTGATCTATTATGA
TACCATATGTTCTGGTGCCTCTTCTCCTAGAATCATATCATCATTATTAT
AGACAGTTCTAGTCAGGTGAGTCATTTTGATTGGTACAGTCTTTGAAAGA
TAACCATAATCTATGGTGAGCGAAATTTCAATATCTTGGTACAATGGGCT
TGTCGGTTTTATCGTGGTCATAAAGTCACAAGATTTTCTTAAGACATCAA
TTTGACCAAATTGGCCAAGGTTTCCAAGGCTAAAGAGCTTGTCTCCCTCG
AAATCGAACAATAATTTCTGGTTAAGACCCGAAATTGACAAGAGCCTGGC
AAGATGGGTGTCATTGATTCTGTGAATAACTTTCGTGTTGTCATCCTTGG
TGCACACCAGACTGGAAAAACTGGTGAGCAATTTTAATTGGTTAATATCT
TTTTTTGCTTCATTTTTCAACAGTCTTTGCAGGGTAATCACATATACGTT
TAGAAAAGATATTAGCATAAACCGTAACCCTCTTGATTAACATTTAACGA
CGTTCATACCGTTAAACATTCCAAAGCAGCCTCACAAATATGGCATTGAT
ACCGTGCCGTAGCTAATGGGGAGCAAAGCCTCTCCTCAAAAAATTTATGA
TTCTACTTGTCCAAATAAAATTTTATTTATTTAAACTAAAATTTTCAACT
TTCTCAACTCGAATTAAACCATGGTTGGCCCTTGTGATGTCGCTACACCT
CCCCCTACCCCCCAAAAAATCAAACATTTTTCAGTTTTCTGTGCCGTCAC
TGTGATGTGTCCTCAAATCTTTAAAAGTCAGCCCTCCTGCTTGATTTATT
TTCACTTATTACACCGTATGTCATTACCTTCAGCTTTGGCAGTACGCTAT
CTTACGGGAAGATTTATCGGTGACTACGCAAGTGGCATGGACACGGCTTA
TCAACATCAAGAAGAAATAGCTAACCAACAAGTTTCTTTGCAAATACTTG
ACACTTCGGAGAAAAAGGTATTTGCTCTTAGTCATTCTTGAATTTGATAT
ATGGATGAATACCGTAGTACTTCAAATAAATGCCCCAGGCCCTTATACTA
GCCATAATTTTCATTAAAGTGCCACCGCAGAAGAACGATCAAATAAATTG
TTGAATTTGGAAAGAAATGTTACTTATAGCCGTTACTTCTGTTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGCGC
GCGCAAAATTATGAGATGTTTTCCCAACTTTCCCTCACGAGTGAAGCTAT
GAATGCCATCCTCGGAAGCTTTAGGCTTCCTGCGGTGGCAATAAGTAGAA
AATTCGTCGAGAAAAAATTTCGTCACTTTTCTCGCTTTCGTTGGCTGAGG
AATTCCTTTGTCTCTAGTTGTTGTGCGTGCCAATGTCATGAACAATGAAG
ATTAAAGTCTCTAAGACCATGTTCGGACGTTACGGTTTCGTATCGCTCCA
GTGTGGTATTCGTTACTGATAGGAAGTGTTCATACTCAGTTCAGAACTGT
TTTGCTTTGTAACGTCTTCTTTTTTGACATTTCTAATTTTGACGTTCACA
CGGAACGTAGCGTGTGAACGTGGTCAAAATGTAGTATCTTTGCAATAGTT
TTTCTTTAAGATCCTCACTTTTTATGGGTATGTCGGTAGAAAGTCGACTG
TCTAAAGTCAATATGATAAAGACAATAAATGTTCAGGCTTCTGACGATAA
TGTCATGAAAAATTTGTCGACTGTCGATTTTCTCATAGCAAGTACCTCAT
CAAACCAAAACAACTGAAAGAAAATATGTGTTGACAGTAGAAAAAATTCA
CGCTAACTTCCTTTCACCATCTGTTATTGAATATGTGCATTGTAACTTGC
TCAGTCAACACACTGGCAAATAGCATGTAAACCCCGGGGGGGGGGATACT
TAAGGGTCGTTAAGGGTCGTTTTCACCCTTCAAAGTCTCTCTAAGGGTTG
CAAAAATCTGAAAAATTTAAATCAGTCACTCTAAGGGTTGGAAAATTCAC
AAGTTTTAGGAATTATTTTTGAAACAGTCTCTCTCGAAGGGTAGGGAGTT
TTTCAAAAATCGAAGAAAATTTTTCAAAAAAGTCTTTTTAAACCTTTTCA
GCAAAGATTAGTCTCTCTAAGGGTCGGTTTTTGGAGGTCCCATCCGCACA
TACTCCTCATCCGCCAGCCCTACTTTAATGGGATGAACTTTCAAGGGGAT
TAAATTTCGCGTTGGGCCTATCGGCGAAATTCAAAAATTTCGCGGGGACT
TAATTTTGCGGGTGGCACTATTGGGTGGCAATATTTTCACGATTTTGTGA
CTTTTACTGTCAAATAATGCATGTTGGTTGTTGAAATACGCATTTATTTG
CGCTCCTTTGAAGCAAGTAGCCATCGAAATAGTATTTATTTTATGTATTT
TGAGTTTTGTTTAGAAATATTTCGCGGATGAGACCCTTCCAAATTTCCAT
TGGGATATAATTTCGCGGATTTTCGTGGATGACACCCATTTCCGCGAAAT
CCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAGTACCCTC
CCGGGCATGCAAATCTGGATCGGAAAAATTGTAGATCATCAGGAATTTTG
GTTTCTCGTTTAAACTTCAAGAATTCTTTCATTCAATGATAAACTTTATT
GCGTGAGATTCAAGATGGCTGCATAATTTCAGATTAATTTCATACATTAC
ATAGTCTCTTTGTATATGCATGTACATTCTTTAACACTCTTTATTTAATT
CGCGGTTTCTTTGACGTTTTTTAATTCGTCAAACAGTTGGGATTAATCGG
ACTAACATTTAATCAAATTTTCTAAAATACTGTCACGCTCTTTCTACAAA
TTGTGGAAATAACAGGATGTCAGAGATATCAGTGATGTCGGTGATCCGTA
CCCAGATGACACACAACGTTGTTTCAACGTTTATCTAACGTTCACAACGT
CCGTATAACGTTAGATGAACGTTGGAACAACGTTGTGTGCCAGCTGGGTA
ACCACAAATATCTTTCAAATGGACAATTAAAGTAGTGTAGTGGCCTATCT
GAAATAAGCATTCTGATACAAATTGTTCTTTAGCTCTAATTTTATGCACA
CTTTTGCTATATACTGTAACTTCAAGATTTGTCAATGAAAAGTTCTTATG
ATTTGCAAAAGTTATTATTAAGTTATTATTAAATTCACCAAAGAGAAATT
TTGGAAACATTGAGAACTTGTCACCCACTATGATGACATTTTGAAATAAA
CCTGAAATTGCAGTGGACTATTAATAATGACGTCGTTTACAAGTCTTAAA
CGGTCATAAATATTGATAGAAAAATGACTGAATGGTAATGTTAATAGAAA
TTCATTTTTAGGCGAAAAATTTCCTGTTGTTATGGAAAGTCGAAAAACTG
TTATTTCGGTTGGAAAGGGTAATGGACTTTAAGTTCCCAAAAAGGCACCC
TTAAGTGCGATACATACCCGTACTCTTCACTTGCCTAGGTACTCTCACTG
AGTTTGCTTCTCTCGACCGAAAAGTTCCTACTCAATTCAGAATCATCTGT
ATATTATAATGTTTTCGTCTACTTTATTTCAGTATTCGAAAGCTGCTTTA
GCATGGGCTGACGGTGTTATTGTTACTTATTCAATCGTCGATCGATCAAG
TCTTCAAAAAGCTAAAGAAATTCTCGAAGAAGTTGAAAAAATCAACAACA
GGAAAGTCATTCTTTTCCTAGTAGCAACCAAAGCTGAATTGAATCAATAT
AGAACTGTACTTCGATACGAAGGTGAATTACTGGCAAGAGAGTATGAAGC
TACACATTTTGAACTCTCTTCTTTCTTAGATTATAAACCTGTGAAACGTG
CTTTTATAAAGTTGGTACGTAAAATGATGGACAGGCGAATCAAAAATGAT
AAAATTGTGGTTACTGGAAAATCACCAACAATGGTTTTTCGGAAGTTGTT
GAACAAGTACGAAAAGAGATCTTCTACCATTTAAGAAGATTTGGGAAATA
AAATGTTGTGAAGCGGTCTAATGTTTTTAATAATTTGGCATTCTTATAAT
TAGAGCTGATAATTTACGTGGATAACCCAGTAATCTAAGACTTTTAGGCA
GTCTTTCCATTGTTTTCACGGGATCCACGCCCAGCCGGCTCGGCTACCTA
TGAACTGAACGGAATGTTGGAGGGAGCGGGGATTTCAACCGCAAATTCCT
GGTTTGAGACGCCGACGCCTTTAACCAATGGGCCATCGCTCCTAATGTTC
TTTAAAGGTCGCGCATACCATTAATTAGTAGTATAACAGCTTCCGATTTT
ACGGTTCACTTTATACCTGCTAGTTATTTTACCTGTTTTTAAGAGCTTTT
TGTAAGTAGCATTTTTATAATGACGATATAGCGTTGCTATAAAAAAAAGA
AATTGATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012899-exon-sc0000157-1575043694:175366..175938 | TCONS_00012899-exon-sc0000157-1575043694:175366..175938 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1575043694:174772..174905 | TCONS_00012899-exon-sc0000157-1575043694:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1575043694:169277..170106 | TCONS_00012899-exon-sc0000157-1575043694:169277..170106 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1510915933:175366..175938 | TCONS_00012899-exon-sc0000157-1510915933:175366..175938 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1510915933:174772..174905 | TCONS_00012899-exon-sc0000157-1510915933:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1510915933:169277..170106 | TCONS_00012899-exon-sc0000157-1510915933:169277..170106 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1491911889:175366..175938 | TCONS_00012899-exon-sc0000157-1491911889:175366..175938 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1491911889:174772..174905 | TCONS_00012899-exon-sc0000157-1491911889:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012899-exon-sc0000157-1491911889:169277..170106 | TCONS_00012899-exon-sc0000157-1491911889:169277..170106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:169277..175938 - |
Blast
BLAST of TCONS_00012899 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.984e-25 Identity = 64/189 (33.86%), Postives = 104/189 (55.03%), Query Frame = 3
Query: 534 RVVILGAHQTGKTALAVRYLTGRFIGDYASGMDTAYQHQEEIANQQVSLQILDTSEKKYS---KAALAWADGVIVTYSIVDRSSLQKA---KEILEEVEKINNRKVILFLVATKAELNQYRTVLRYEGELLAREYEATHFELSSFLDYKPVKRAFIKLVRKMMDRRIKNDKIVVTGKSPTMVFRKLLNK 1082
++ I G GK+AL VR+LT RFI +Y +++ Y+HQ I ++ VS++ILDT+ ++ + + + W +G ++ Y I DR S ++ K IL+E++K N V L LV KA+L+ R V EGE LA E +E S+ + F +L R++ RR+ K +S T ++ +NK
Sbjct: 8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQGK--TRRRSSTTHVKQAINK 192
The following BLAST results are available for this feature:
|
