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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012900 ID=TCONS_00012900|Name=TCONS_00012900|organism=Clytia hemisphaerica|type=transcript|length=1080bp
CAATCTGAAACATGCACCATGTTGTCATTGATATCATTATGGTTGAAGTA
CGTTGATTAAAAGAAATGACCTGTCCATGGAATTCTTCACATTTTGAGTA
CTCACAAAAATGCGAGCTTTGGCAGTACGCTATCTTACGGGAAGATTTAT
CGGTGACTACGCAAGTGGCATGGACACGGCTTATCAACATCAAGAAGAAA
TAGCTAACCAACAAGTTTCTTTGCAAATACTTGACACTTCGGAGAAAAAG
TATTCGAAAGCTGCTTTAGCATGGGCTGACGGTGTTATTGTTACTTATTC
AATCGTCGATCGATCAAGTCTTCAAAAAGCTAAAGAAATTCTCGAAGAAG
TTGAAAAAATCAACAACAGGAAAGTCATTCTTTTCCTAGTAGCAACCAAA
GCTGAATTGAATCAATATAGAACTGTACTTCGATACGAAGGTGAATTACT
GGCAAGAGAGTATGAAGCTACACATTTTGAACTCTCTTCTTTCTTAGATT
ATAAACCTGTGAAACGTGCTTTTATAAAGTTGGTACGTAAAATGATGGAC
AGGCGaatcaaaaatgataaaattgtgGTTACTGGAAAATCACCAACAAT
GGTTTTTCGGAAGTTGTTGAACAAGTACGAAAAGAGATCTTCTACCATTT
AAGAAGATTTGGGAAATAAAATGTTGTGAAGCGGTctaatgtttttaata
atttgGCATTCTTATAATTAGAGCTGATAATTTACGTGGATAACCCAGTA
ATCTAAGACTTTTAGGCagtctttccattgttttcacgGGATCCACgccc
agccggctcggctacctatgaactgaacggaatgTTGGAGGGAGCGGGGA
TTTCAACCGCAAATTCCTGGTTTGAGACGCCGACGCCTTTAACCAATGGG
CCATCGCTCCTAATGTTCTTTAAAGGTCGCGCATACCATTAATTAGTAGT
ATAACAGCTTCCGATTTTACGGTTCACTTTATACCTGCTAGTTATTTTAC
CTGTTTTTAAGAGCTTTTTGTAAGTAGCATTTTTATAATGACGATATAGC
GttgctataaaaaaaagaaattgatacCAT Run BLAST on NCBI transcript from alignment at sc0000157:169277..176977- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012900 ID=TCONS_00012900|Name=TCONS_00012900|organism=Clytia hemisphaerica|type=transcript|length=7701bp|location=Sequence derived from alignment at sc0000157:169277..176977- (Clytia hemisphaerica)
CAATCTGAAACATGCACCATGTTGTCATTGATATCATTATGGTTGAAGTA
CGTTGATTAAAAGAAATGACCTGTCCATGGAATTCTTCACATTTTGAGTA
CTCACAAAAATGCGAGGTTTGTTTCCATTCTTGGATATCGTGTTGGCGAA
AATTTTAGCTATTTTAAATTTGGTGTGGTCGAATTAACACAATAATTTAG
AATTAAGCCTCCTTTTAAGTTTGAATAAATGTAGGTGACCCCTAGCTGAG
TTTGTAGCCCCTGACGTAAAGCTATTTCTAGGTACCAGTTGTGGTGGAAC
CTGTTAGATCCCCCTTGTGGCCAGGGGGTGAAGCTATGTTGGTAAATTCA
TTTCTTATAATGAAATAAACGTGCATATGTTTTGGAAAAGAGGTCTTTGA
CAAGGTTAAATGCAATCTTAGCGGGAAATCTGCCATTATGGATAAATAAA
TTCGAATTTGAAGAGGTGATTCGAATGATTCATTTCATGACGGTGAAAGT
TATGTATTGAACCAAACCTGGAAAAATTTCTTTATAGACTTAATTTTGGT
TAAGCACAGGTTAACATTCAACAGATCTATGGGTGAACTATGCATGAATT
CATAATGTTGTGAGCCCGCCAGGGCCAGGACACTTGATCAGAAAAATACT
GATTCTGTGGACAAAAATTAATGTCTCATAATTAACCTCTTGAAGAAACA
TCGAAATTATACGGTGGATTTTCATTACTTAAAGAAATATTCTCCCAAAC
AACGTTTTTCTCAGCTTTTTACGCTCTTAGAGTACATTTTATTCATTTCG
ACCTTTACTTTGTAAATTTCCAACCTCAAATTTATTCGAACCCCCCTGTT
TATTTGGCACCTAAGAGTACCCGTAAGGCAGGTCGCTTATCTTGAGGTTA
GCGATGAGAAGGGAAAAGCAGACGGATTTTCGAATCTAAGTCTGGAATTC
ATAATATTTTCATGTTTCTCATGTTCGTTTATTTTCTACTCCAACATTTT
GACGTCAGCTGTTCCTTCATAACCTCAAGGTACGGCCCCCGAAAATCGAA
CAAAACTAAACCAAATCATCAAGTTTAGTAATCTTATTTATCCAAAAATG
CATTTTTTACAACGATCGTGAGATGTATCAATTACCAATTTGTGGTCGTA
GTTGAAAAATTCCTCAAATATTTTTATGAACTCCGTTAATCTAAAATGCG
GTTTTTTTTTGCATTTGTTAATAGCGTGATCTATTATGATACCATATGTT
CTGGTGCCTCTTCTCCTAGAATCATATCATCATTATTATAGACAGTTCTA
GTCAGGTGAGTCATTTTGATTGGTACAGTCTTTGAAAGATAACCATAATC
TATGGTGAGCGAAATTTCAATATCTTGGTACAATGGGCTTGTCGGTTTTA
TCGTGGTCATAAAGTCACAAGATTTTCTTAAGACATCAATTTGACCAAAT
TGGCCAAGGTTTCCAAGGCTAAAGAGCTTGTCTCCCTCGAAATCGAACAA
TAATTTCTGGTTAAGACCCGAAATTGACAAGAGCCTGGCAAGATGGGTGT
CATTGATTCTGTGAATAACTTTCGTGTTGTCATCCTTGGTGCACACCAGA
CTGGAAAAACTGGTGAGCAATTTTAATTGGTTAATATCTTTTTTTGCTTC
ATTTTTCAACAGTCTTTGCAGGGTAATCACATATACGTTTAGAAAAGATA
TTAGCATAAACCGTAACCCTCTTGATTAACATTTAACGACGTTCATACCG
TTAAACATTCCAAAGCAGCCTCACAAATATGGCATTGATACCGTGCCGTA
GCTAATGGGGAGCAAAGCCTCTCCTCAAAAAATTTATGATTCTACTTGTC
CAAATAAAATTTTATTTATTTAAACTAAAATTTTCAACTTTCTCAACTCG
AATTAAACCATGGTTGGCCCTTGTGATGTCGCTACACCTCCCCCTACCCC
CCAAAAAATCAAACATTTTTCAGTTTTCTGTGCCGTCACTGTGATGTGTC
CTCAAATCTTTAAAAGTCAGCCCTCCTGCTTGATTTATTTTCACTTATTA
CACCGTATGTCATTACCTTCAGCTTTGGCAGTACGCTATCTTACGGGAAG
ATTTATCGGTGACTACGCAAGTGGCATGGACACGGCTTATCAACATCAAG
AAGAAATAGCTAACCAACAAGTTTCTTTGCAAATACTTGACACTTCGGAG
AAAAAGGTATTTGCTCTTAGTCATTCTTGAATTTGATATATGGATGAATA
CCGTAGTACTTCAAATAAATGCCCCAGGCCCTTATACTAGCCATAATTTT
CATTAAAGTGCCACCGCAGAAGAACGATCAAATAAATTGTTGAATTTGGA
AAGAAATGTTACTTATAGCCGTTACTTCTGTTANNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGCGCGCGCAAAATTA
TGAGATGTTTTCCCAACTTTCCCTCACGAGTGAAGCTATGAATGCCATCC
TCGGAAGCTTTAGGCTTCCTGCGGTGGCAATAAGTAGAAAATTCGTCGAG
AAAAAATTTCGTCACTTTTCTCGCTTTCGTTGGCTGAGGAATTCCTTTGT
CTCTAGTTGTTGTGCGTGCCAATGTCATGAACAATGAAGATTAAAGTCTC
TAAGACCATGTTCGGACGTTACGGTTTCGTATCGCTCCAGTGTGGTATTC
GTTACTGATAGGAAGTGTTCATACTCAGTTCAGAACTGTTTTGCTTTGTA
ACGTCTTCTTTTTTGACATTTCTAATTTTGACGTTCACACGGAACGTAGC
GTGTGAACGTGGTCAAAATGTAGTATCTTTGCAATAGTTTTTCTTTAAGA
TCCTCACTTTTTATGGGTATGTCGGTAGAAAGTCGACTGTCTAAAGTCAA
TATGATAAAGACAATAAATGTTCAGGCTTCTGACGATAATGTCATGAAAA
ATTTGTCGACTGTCGATTTTCTCATAGCAAGTACCTCATCAAACCAAAAC
AACTGAAAGAAAATATGTGTTGACAGTAGAAAAAATTCACGCTAACTTCC
TTTCACCATCTGTTATTGAATATGTGCATTGTAACTTGCTCAGTCAACAC
ACTGGCAAATAGCATGTAAACCCCGGGGGGGGGGATACTTAAGGGTCGTT
AAGGGTCGTTTTCACCCTTCAAAGTCTCTCTAAGGGTTGCAAAAATCTGA
AAAATTTAAATCAGTCACTCTAAGGGTTGGAAAATTCACAAGTTTTAGGA
ATTATTTTTGAAACAGTCTCTCTCGAAGGGTAGGGAGTTTTTCAAAAATC
GAAGAAAATTTTTCAAAAAAGTCTTTTTAAACCTTTTCAGCAAAGATTAG
TCTCTCTAAGGGTCGGTTTTTGGAGGTCCCATCCGCACATACTCCTCATC
CGCCAGCCCTACTTTAATGGGATGAACTTTCAAGGGGATTAAATTTCGCG
TTGGGCCTATCGGCGAAATTCAAAAATTTCGCGGGGACTTAATTTTGCGG
GTGGCACTATTGGGTGGCAATATTTTCACGATTTTGTGACTTTTACTGTC
AAATAATGCATGTTGGTTGTTGAAATACGCATTTATTTGCGCTCCTTTGA
AGCAAGTAGCCATCGAAATAGTATTTATTTTATGTATTTTGAGTTTTGTT
TAGAAATATTTCGCGGATGAGACCCTTCCAAATTTCCATTGGGATATAAT
TTCGCGGATTTTCGTGGATGACACCCATTTCCGCGAAATCCGCGAAATTT
AATCCCCGCGAAAGTTTATCCCATTAAAGTAGTACCCTCCCGGGCATGCA
AATCTGGATCGGAAAAATTGTAGATCATCAGGAATTTTGGTTTCTCGTTT
AAACTTCAAGAATTCTTTCATTCAATGATAAACTTTATTGCGTGAGATTC
AAGATGGCTGCATAATTTCAGATTAATTTCATACATTACATAGTCTCTTT
GTATATGCATGTACATTCTTTAACACTCTTTATTTAATTCGCGGTTTCTT
TGACGTTTTTTAATTCGTCAAACAGTTGGGATTAATCGGACTAACATTTA
ATCAAATTTTCTAAAATACTGTCACGCTCTTTCTACAAATTGTGGAAATA
ACAGGATGTCAGAGATATCAGTGATGTCGGTGATCCGTACCCAGATGACA
CACAACGTTGTTTCAACGTTTATCTAACGTTCACAACGTCCGTATAACGT
TAGATGAACGTTGGAACAACGTTGTGTGCCAGCTGGGTAACCACAAATAT
CTTTCAAATGGACAATTAAAGTAGTGTAGTGGCCTATCTGAAATAAGCAT
TCTGATACAAATTGTTCTTTAGCTCTAATTTTATGCACACTTTTGCTATA
TACTGTAACTTCAAGATTTGTCAATGAAAAGTTCTTATGATTTGCAAAAG
TTATTATTAAGTTATTATTAAATTCACCAAAGAGAAATTTTGGAAACATT
GAGAACTTGTCACCCACTATGATGACATTTTGAAATAAACCTGAAATTGC
AGTGGACTATTAATAATGACGTCGTTTACAAGTCTTAAACGGTCATAAAT
ATTGATAGAAAAATGACTGAATGGTAATGTTAATAGAAATTCATTTTTAG
GCGAAAAATTTCCTGTTGTTATGGAAAGTCGAAAAACTGTTATTTCGGTT
GGAAAGGGTAATGGACTTTAAGTTCCCAAAAAGGCACCCTTAAGTGCGAT
ACATACCCGTACTCTTCACTTGCCTAGGTACTCTCACTGAGTTTGCTTCT
CTCGACCGAAAAGTTCCTACTCAATTCAGAATCATCTGTATATTATAATG
TTTTCGTCTACTTTATTTCAGTATTCGAAAGCTGCTTTAGCATGGGCTGA
CGGTGTTATTGTTACTTATTCAATCGTCGATCGATCAAGTCTTCAAAAAG
CTAAAGAAATTCTCGAAGAAGTTGAAAAAATCAACAACAGGAAAGTCATT
CTTTTCCTAGTAGCAACCAAAGCTGAATTGAATCAATATAGAACTGTACT
TCGATACGAAGGTGAATTACTGGCAAGAGAGTATGAAGCTACACATTTTG
AACTCTCTTCTTTCTTAGATTATAAACCTGTGAAACGTGCTTTTATAAAG
TTGGTACGTAAAATGATGGACAGGCGAATCAAAAATGATAAAATTGTGGT
TACTGGAAAATCACCAACAATGGTTTTTCGGAAGTTGTTGAACAAGTACG
AAAAGAGATCTTCTACCATTTAAGAAGATTTGGGAAATAAAATGTTGTGA
AGCGGTCTAATGTTTTTAATAATTTGGCATTCTTATAATTAGAGCTGATA
ATTTACGTGGATAACCCAGTAATCTAAGACTTTTAGGCAGTCTTTCCATT
GTTTTCACGGGATCCACGCCCAGCCGGCTCGGCTACCTATGAACTGAACG
GAATGTTGGAGGGAGCGGGGATTTCAACCGCAAATTCCTGGTTTGAGACG
CCGACGCCTTTAACCAATGGGCCATCGCTCCTAATGTTCTTTAAAGGTCG
CGCATACCATTAATTAGTAGTATAACAGCTTCCGATTTTACGGTTCACTT
TATACCTGCTAGTTATTTTACCTGTTTTTAAGAGCTTTTTGTAAGTAGCA
TTTTTATAATGACGATATAGCGTTGCTATAAAAAAAAGAAATTGATACCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012900-exon-sc0000157-1575043694:176862..176977 | TCONS_00012900-exon-sc0000157-1575043694:176862..176977 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1575043694:174772..174905 | TCONS_00012900-exon-sc0000157-1575043694:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1575043694:169277..170106 | TCONS_00012900-exon-sc0000157-1575043694:169277..170106 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1510915933:176862..176977 | TCONS_00012900-exon-sc0000157-1510915933:176862..176977 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1510915933:174772..174905 | TCONS_00012900-exon-sc0000157-1510915933:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1510915933:169277..170106 | TCONS_00012900-exon-sc0000157-1510915933:169277..170106 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1491911889:176862..176977 | TCONS_00012900-exon-sc0000157-1491911889:176862..176977 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1491911889:174772..174905 | TCONS_00012900-exon-sc0000157-1491911889:174772..174905 | Clytia hemisphaerica | exon |
| TCONS_00012900-exon-sc0000157-1491911889:169277..170106 | TCONS_00012900-exon-sc0000157-1491911889:169277..170106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:169277..176977 - |
Blast
BLAST of TCONS_00012900 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.412e-23 Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 2
Query: 116 ALAVRYLTGRFIGDYASGMDTAYQHQEEIANQQVSLQILDTSEKKYS---KAALAWADGVIVTYSIVDRSSLQKA---KEILEEVEKINNRKVILFLVATKAELNQYRTVLRYEGELLAREYEATHFELSSFLDYKPVKRAFIKLVRKMMDRRIKNDKIVVTGKSPTMVFRKLLNK 625
AL VR+LT RFI +Y +++ Y+HQ I ++ VS++ILDT+ ++ + + + W +G ++ Y I DR S ++ K IL+E++K N V L LV KA+L+ R V EGE LA E +E S+ + F +L R++ RR+ K +S T ++ +NK
Sbjct: 21 ALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQGK--TRRRSSTTHVKQAINK 192
The following BLAST results are available for this feature:
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