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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012910 ID=TCONS_00012910|Name=TCONS_00012910|organism=Clytia hemisphaerica|type=transcript|length=4617bpRun BLAST on NCBI protein sequence of TCONS_00012910-protein >TCONS_00012910-protein ID=TCONS_00012910-protein|Name=TCONS_00012910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp MVRAHIYQARSLIGSDDSGLSDAFCRCVVTYKSQDTYVVWVTRSPTWDMTRun BLAST on NCBI transcript from alignment at sc0000157:447257..466264- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012910 ID=TCONS_00012910|Name=TCONS_00012910|organism=Clytia hemisphaerica|type=transcript|length=19008bp|location=Sequence derived from alignment at sc0000157:447257..466264- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:447257..466264- >TCONS_00012910 ID=TCONS_00012910|Name=TCONS_00012910|organism=Clytia hemisphaerica|type=CDS|length=64284bp|location=Sequence derived from alignment at sc0000157:447257..466264- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012910 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3) HSP 1 Score: 594.349 bits (1531), Expect = 1.515e-180 Identity = 321/678 (47.35%), Postives = 434/678 (64.01%), Query Frame = 2
Query: 1307 VLDWWTRFYETLRDMEDKTPKKKKFGIKM------------------------------------ASAEGGD--EAERAKIPRIKIYDTALEDVEEFGGFGDFMCAFNLLRGKKT--XXXXXXXRRFSGRFKGNIRVWEYPLPTGFDK----DDEMGTFYKLPSNEPFNLLVRVYVIRCLNLHPMDPNGKADPYLICSLGKKVFKDKDKYVSKQLCPEFGRCFEFEAVIPFDTTVRVAVMDWDMLSGDDLIGETFIDIENRFYSKHRPSCGIQNNYATHGYAKWRDPQRPASILTKLCKEHAVDGPYFNN-GTCSINGKQWNASPVIIDDKGKEKVSDEPCALEALHNFQDLGPKGFNLVPEHVETRSLFNPEKPGIDMGKVQMFIDMFPMDLTMPGEPVNIEVRKPTEYELRVTIWNTSDVLADETDLITGEASSDQFIKGWVEGNREDMQETDVHYRSYDGSGMFNWRFLFPFKYHKAEEKIVTHKKANLFAVDLTEEKHKPLLFLQVWDADLFSSDDFIGDVTLSLAKLPSPAKTAKQCNLDMLETSAR---ASIFKIKKCRGWWPFQVNPEXXXXXXXVLAGKVEAEIELLTKEDAEANPVGKKREEPQPLEKPNRPNDGFFTFMGPLTMLRYLIWEPYKWXXXXXXXXXXXXXXXXXXXYSMPGYTIKKVFGA 3196
+LDWW++++ ++ M+++ +++ GI + S +G + E ++ KI +K+Y LE EF F D++ FNLLRGK ED EE R GRFKG++ V++ PLP + D G F +PSN+P N+LVRVYV+R +LHP D NGKADPY+ LGK +DK+ Y+SKQL P FG+ F+ EA P ++ + VAV DWD++ DDLIGET ID+ENRFYSKHR +CGI Y+THGY WRDP +P+ ILT+LCK+ VDGP+F G + + + I D+ G+ K +DE AL AL +++D+ G LVPEHVETR L NP+KPGI+ G++++++DMFPMD+ PG P++I RKP +YELRV IWNT +V+ ++ D TGE SSD F++GW++G +ED Q+TDVHY S G G FNWR+LFPF Y AEEKIV KK ++F+ D TE K L LQ+WDAD FS+DDF+G + L L + P AKTAKQC ++M SIFK K+ +GWWP E+D+ L GKVEAE+ LLT E+AE NPVG R EP PLEKPNRP+ F F+ PL RY +W Y+W+LLK+L++ LLL++L LFLYS+PGY +KK+ GA
Sbjct: 1325 MLDWWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKIDELKVYPKELE--SEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDSTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSTHGYNIWRDPMKPSQILTRLCKDGKVDGPHFGPPGRVKVANRVFTGPSEIEDENGQRKPTDEHVALLALRHWEDIPRAGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIIWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDYLAAEEKIVISKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTMEMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFE---LTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSARYFLWHTYRWLLLKLLLLLLLLLLLALFLYSVPGYLVKKILGA 1997 HSP 2 Score: 260.381 bits (664), Expect = 6.411e-70 Identity = 142/347 (40.92%), Postives = 208/347 (59.94%), Query Frame = 2
Query: 116 QAKVEVRFWLGLIKDKSEYLKDAPSGFEIEEEKATFSVINSPPDILFYKEKQKFMVRAHIYQARXXXXXXXXXXXXAFCRCVVTYKSQDTYVVWVTRSPTWDMTMIFNDIELWGDVTEFAVNPPIIVLEVFDQDAGGDEEFIGRALVKPVVKLASEAYKKPLFPPILQWFPVFRGETRAGEILGAFEMLQVSEDDFQLMPDEPLMPDEIKPVDGPDSF--GPLMRIPEDIRPAMQLHRIEILFWGVRDIKKVQFMNCNRPQAELDCCYGVTKQTGXXXXXXXXXXXXXARRNPNFDDSVDIFDVWLPEKEKYLPPMTIHVKDNRAFGRQVLCGTHVIDTLHKYFMDP 1150
QAKVE+ WLGL K + E+L P GF+ + + PP L Y +KQ F +RAH+YQARSL +D SGLSD F R +SQ T V+ T PTWD ++F+++EL+G+ E +PPIIV+E++DQD+ G +F+GR KP+VK+A EAY P FPP L+++ ++RG AG++L AFE+LQ+ P ++ P++GP GP+M +P IRP + +R+E+LFWG+RD+K+V +RP+ +++C G Q+ N ++NPNF+ V F+V LPE E PP+ I V D RAFGR L G+H + +L ++ P
Sbjct: 907 QAKVELYLWLGLSKQRKEFLCGLPCGFQEVKAAQGLGLHAFPPVSLVYTKKQAFQLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHELRDDPPIIVIEIYDQDSMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDLLAAFELLQIG----------PAGKADLPPINGPVDVDRGPIMPVPMGIRPVLSKYRVEVLFWGLRDLKRVNLAQVDRPRVDIECA-GKGVQSSLIHNY---------KKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRP 1233 The following BLAST results are available for this feature:
BLAST of TCONS_00012910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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