Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012911 ID=TCONS_00012911|Name=TCONS_00012911|organism=Clytia hemisphaerica|type=transcript|length=1163bpRun BLAST on NCBI transcript from alignment at sc0000157:466939..474057- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012911 ID=TCONS_00012911|Name=TCONS_00012911|organism=Clytia hemisphaerica|type=transcript|length=7119bp|location=Sequence derived from alignment at sc0000157:466939..474057- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00012911 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3) HSP 1 Score: 253.447 bits (646), Expect = 7.639e-74 Identity = 137/372 (36.83%), Postives = 217/372 (58.33%), Query Frame = 3 Query: 66 GFMPQFGPTWVNLYGSTRDYALNDEHQDLNNSIGEGIAYRGRLLIWL-----DCIEGEPADTGMVEIDDCDPIPPKIMGRDEVYQLFSTFYEASMIPRKIGTKPISFETTIGEYGFYMKNPSNTDDKTKPRIDFSTPNQXXXXXXXXX-XLYQQEKVYVESLTPPTQPLTHEKKYLHVPFGSDKPCCHIKFPFEDQRRRHYNKILLLKIWTILEENLDELDERVRLNSKGTAKLLKRIMGDVCRQCSLFIELADGKKTSTHLGKNRLDKERTKMLLICVKQVSEEAALIGEKSKDANCKVEDLVKQAHNLRKRTKKLLNEPQHGLPDVFVWMLSNNKRIAYTRIPAEEILFSRVQSEKGRNCGRVQTIFLRV 1163 GF+P GP WVN+YGSTR+Y L DEHQDLN +GEG+++R RLL+ L D E + V+++ PI G+ E + LF F EASMI R+ G KPI+FE TIG YG + S + +PR + + ++ D E + S TPP +P ++ Y H+P+ KPC +IK + DQRRR YN ++ I LEE L+++ E ++ + L+ ++ ++ C F+ LAD K H + RLD+ER K + ++ + ++A ++ + K V D ++ N ++ + L +EPQH +PD+F+WM+SNNKR+AY R+P++++LFS V+ E G++C +V+T+FL++ Sbjct: 527 GFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLLLGLAVEIVDTSNPELTSSTEVQVEQATPISESCAGKMEEFFLFGAFLEASMIDRRNGDKPITFEVTIGNYGNEVDGLSRPQ-RPRPRKEPGDEEEVDLIQNASDDEAGDAGDLASVSSTPPMRPQVTDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDIQEMIKTEKSYPERRLRGVLEELSCGCCRFLSLAD--KDQGHSSRTRLDRERLKSCMRELENMGQQARMLRAQVK--RHTVRDKLRLCQNFLQKLRFLADEPQHSIPDIFIWMMSNNKRVAYARVPSKDLLFSIVEEETGKDCAKVKTLFLKL 893 The following BLAST results are available for this feature:
BLAST of TCONS_00012911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|