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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012912 ID=TCONS_00012912|Name=TCONS_00012912|organism=Clytia hemisphaerica|type=transcript|length=4071bpRun BLAST on NCBI protein sequence of TCONS_00012912-protein >TCONS_00012912-protein ID=TCONS_00012912-protein|Name=TCONS_00012912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp MALDLQLKVINNLKGKADRFCRLIFRGVPATSAVLTNCSGDAFFNEEFYWRun BLAST on NCBI transcript from alignment at sc0000157:466939..487319- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012912 ID=TCONS_00012912|Name=TCONS_00012912|organism=Clytia hemisphaerica|type=transcript|length=20381bp|location=Sequence derived from alignment at sc0000157:466939..487319- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:466939..487319- >TCONS_00012912 ID=TCONS_00012912|Name=TCONS_00012912|organism=Clytia hemisphaerica|type=CDS|length=61800bp|location=Sequence derived from alignment at sc0000157:466939..487319- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012912 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3) HSP 1 Score: 540.421 bits (1391), Expect = 4.903e-163 Identity = 317/901 (35.18%), Postives = 503/901 (55.83%), Query Frame = 1
Query: 1600 MALDLQLKVINNLKGKADRFCRLIFRGVPATSAVLTNCSGDAFFNEEFYWPLETPIDKEEWLEVRLYNRNKIFQDRLVAAYRLSLAAISEGGTAEVIDNMIDDRFQILKTEIHMEVTYTKPEP-------GGVLYDMDQRSYDKKS-----------------------LGGKSXXXXXXXXXNR------QLNDEEADIYDKEIFHPKIQ-----HPHIVN-AMFSDWTISVR------IIEAQDLAGVSLDPSVTIT-------------------LGENEKKTTVKKQTNNPSWDELFCFDYKCPAQEVLDTILKIEVFTGRNMISEGSSIGFFKCDMWYIYDQCDHSFFSKWAPLL--DGATTEIKGYLRLDLQMFGKGDIVKDPPPRKEDQE--IDQNLILPPKTNPYRPVHQYQIKVFKAEGIPQMNTTFMANVKKTFTKKNQDMADPFVEVSFAGVTATTNTEKNTYNPEFNQLISFTEFFPPLCKRIRFQLKDSDVTSNEVIGTHFLDLDEISNEGQKNKGGFMPQFGPTWVNLYGSTRDYALNDEHQDLNNSIGEGIAYRGRLLIWL-----DCIEGEPADTGMVEIDDCDPIPPKIMGRDEVYQLFSTFYEASMIPRKIGTKPISFETTIGEYGFYMKNPSNTDDKTKPRIDFSTPNQX-XXXXXXXXXLYQQEKVYVESLTPPTQPLTHEKKYLHVPFGSDKPCCHIKFPFEDQRRRHYNKILLLKIWTILEENLDELDERVRLNSKGTAKLLKRIMGDVCRQCSLFIELADGKKTSTHLGKNRLDKERTKMLLICVKQVSEEAALIGEKSKDANCKVEDLVKQAHNLRKRTKKLLNEPQHGLPDVFVWMLSNNKRIAYTRIPAEEILFSRVQSEKGRNCGRVQTIFLRV 4071
MAL + LK ++ L+G+ DR ++ FRG S VL NC A F+E F WP+ + ID+ E LE++++N +K+F ++L+ +R+ L + E EV D +IDD I+KT + +EV Y + G L D + +K S G+S + M + NR Q DE A + +++ H I+ P V+ A + T +V I+ + AG +D V+IT +G+++K T++K+ TN P ++E F FD+ + D I+KI V +N++ G+ +G FK D+ +Y Q +H F KWA L D ++ +KGY++ D+ + GKGD +K P E E I+ NL+LP P R ++ +K+++AEG+P+MNT+ MANVKK F +N+D+ DP+V+V FAG T+ +K++Y P +N+ + FT+ FPPLCKR++ Q++DSD ++ IGTHF+DL +ISN+G K GF+P GP WVN+YGSTR+Y L DEHQDLN +GEG+++R RLL+ L D E + V+++ PI G+ E + LF F EASMI R+ G KPI+FE TIG YG + S + +PR + + I + +DE + S TPP +P ++ Y H+P+ KPC +IK + DQRRR YN ++ I LEE L+++ E ++ + L+ ++ ++ C F+ LAD K H + RLD+ER K + ++ + ++A ++ + K V D ++ N ++ + L +EPQH +PD+F+WM+SNNKR+AY R+P++++LFS V+ E G++C +V+T+FL++
Sbjct: 1 MALLIHLKTVSELRGRGDRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEMLEIQVFNYSKVFSNKLIGTFRMVLQKVVEESHVEVTDTLIDDNNAIIKTSLCVEVRYQATDGTVGSWDDGDFLGDESLQEEEKDSQETDGLLPGSRPSSRPPGEKSFRRAGRSVFSAMKLGKNRSHKEEPQRPDEPAVLEMEDLDHLAIRLGDGLDPDSVSLASVTALTTNVSNKRSKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISSGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDK---GFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLLLGLAVEIVDTSNPELTSSTEVQVEQATPISESCAGKMEEFFLFGAFLEASMIDRRNGDKPITFEVTIGNYGNEVDGLSRP-QRPRPRKEPGDEEEVDLIQNASDDEAGDAGDLASVSSTPPMRPQVTDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDIQEMIKTEKSYPERRLRGVLEELSCGCCRFLSLAD--KDQGHSSRTRLDRERLKSCMRELENMGQQARMLRAQVK--RHTVRDKLRLCQNFLQKLRFLADEPQHSIPDIFIWMMSNNKRVAYARVPSKDLLFSIVEEETGKDCAKVKTLFLKL 893 The following BLAST results are available for this feature:
BLAST of TCONS_00012912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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