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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012913 ID=TCONS_00012913|Name=TCONS_00012913|organism=Clytia hemisphaerica|type=transcript|length=609bp
gattcaGAATGAGTAATGTTTGCTTTGTCATTCCATCACTGTATTACTTG
TTGTTGTAATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCT
GATGACGTAGGTGAAAAATCCATCATCAAAGATCTTGGTTCAGAGTATGC
AGATGACAATGGTAATATGAATTCTCAACGTAATATGAAACCTTTCAATG
GTGGCAAAACACCAAATGGGAAAATGTTTATGCAGAAAGACTTAAAAGAA
CTTGGAAGgaAATCTGCTAGAGGAAATTCGAAGAATGCCCCGTACAGCCA
ATCACAATTAGATTTCTTTGAAATGTTGGACAAGAAGATTATGGAGGTAT
TATTCTTATTGTTCTGTTGTTTTTAGCTCGGTTGACTTTTTGCCCTGTTT
ATTCTAATTGTAGAGTGGGCAAAAAGAAGGTaaaaagttggcagttaaaa
tactacttgaaaaagattgaaaatgtcATTGCGTTGACGTCAAaagcatt
gactttagacagcaaACTTTGTGTCCATTTTAATTCACAATAAGATTAAG
TTAGGTCGAAAAGCGGATCGTCTAAACCAGAGCTTAATGATTTATGGTCG
AGATACGAG Run BLAST on NCBI protein sequence of TCONS_00012913-protein >TCONS_00012913-protein ID=TCONS_00012913-protein|Name=TCONS_00012913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MGCRSTKPLNNSVSDDVGEKSIIKDLGSEYADDNGNMNSQRNMKPFNGGK
TPNGKMFMQKDLKELGRKSARGNSKNAPYSQSQLDFFEMLDKKIMEVLFL
LFCCF Run BLAST on NCBI transcript from alignment at sc0000157:489631..495290- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012913 ID=TCONS_00012913|Name=TCONS_00012913|organism=Clytia hemisphaerica|type=transcript|length=5660bp|location=Sequence derived from alignment at sc0000157:489631..495290- (Clytia hemisphaerica)
GATTCAGAATGAGTAATGTTTGCTTTGTCATTCCATCACTGTATTACTTG
TTGTTGTAATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCT
GATGACGTAGGTGAAAAATCCATCATCAAAGGTAATTCTGAGTCTACTTC
TTTTCATTATCCAATATTATCCATTTTTATTCCAAATTTTAACAGTAACG
TAGACAGTAGGGGCGCAANTATTGGATTATTTTTTTCCGAATTTTAGATA
TAAAGTTTCATAAAGCAGTTTACAGTTTTACTAACTTCAGCTAATTTTTT
TGAATTTTTTTTAACCTTAATGGGATGGGCTTTTTTGAAATAATTGAGGC
AGTTCAGTTGAGCGTAATAAACAAAGAATTTTTACTTTTTGAAGGAAGAA
CTAACTTTGGAGATAATAAAGGACTGAGGATCCCCTGTTTGCTTTAATTC
TCTGCACCGAAGGAGAATATTGAACTTTTGAAGATTGCTTGAAGAGGGTA
AATGCAAATAGCCATACATATTGAAACCTGTTTTAATCGTAGACGATCAA
TGTTTTCACTCGACGATTTCCCAATGAGAAACATTTGAATAACTTAGCCT
AATAATTTAGCCTATAATTGGCCCGAAGGGGGATAGAAATCACTTCGAAT
AACTGAAAGTTCGAATAATTGAAGTTAAAATGACCGAGAGTGTTTTTGTC
TGAGTTGGGTAAGCAGATCCAACGGGGAACACCAACTCACTTCGAATAAC
CGAATTATTGCATAAGTGCAGGTTCGAATAATTGGGAGTCTACGACTGTA
CAAATTTTCGGGGCAGAACTAGCGAGCACCTCACTAAAAACTGGGATTTT
TCATCTCGTTTCTTAGAGAGTTCCACTTTGACGATTTTCGAAAAATAGAA
GGCTTTCAAGTGTTTTGACGCAAATTCATTTCTTTGCTACTGCAGAAGCT
TTTAAAGTTAAAAGTGACGTCAAAAAATCGAATGTTTGGAGCCCGAAAAC
CTGCGCTCCAAACATTCGAAAAAGTCGCAAAGTGGAATAGGCGTTGAGTG
CGTAGAAAAAAAGCGGGTGACGTCTAGTATAGGTTAGGGCAGAACCGGAT
AAAGATCTAAACTTTGCTAGATTCCGTTCGTACCCACGGTCTTTTTCAGA
TAGAATGCCCCAATATCAGCCTCTTAGCATAGTTAGATATTTCCTCACAG
GAAAAAAAGTCCCAACTGTTTTGCTGACCTGTCTAAAACCTTGTTTCGTT
GAAAGGTAATTGCCCGTTGGGCTCAGGTAGAAGTGCAAGCTACAGTTGAT
CATCTTTAATTCGATCTTCAAGGGACAAAACTTTTAGAAAGATTTGGATT
ACGTAGAGTGCTTTATATGATATTCCAGATGAGTGGGACCCAATGTTTTA
GTTCGAATTACAGAAAGATTCGAATAATAGAGATTGAAATAAGAGGGAGT
TGCCTGTAGCACTAATATTAAAGGGATAATCAGATGGTTTGTGATATTTC
GCATATGGGATCCTTCTATTGTCCTGAGCAAAATCTCACGGATATTTAAG
TTTGAAGTTTTTGGCCTTTAAGCTTTTTTCACATGTACGTAAAGTTTTAC
TTAAGAACTTACGGAAAATCGTTCGTAAGGGTGTCTTTTGGGAATTTCCT
CGACATCATGTAGAGTATTTGTTAATTAAAAGGGTCTTACGTGACTTTTC
CTTCCGTTCAAAACTTTTTGAACGTAAGCAAACTCTACATAAGGCCTTAA
AACACTACGTAAGCTTAGGGAAATTCCCCACCCTTCAAGGTCTTTTAAGT
AAAATTTTACGTGCATGTGAAAAAAGCTTTAGGATGAAAACAATAGAATT
TCAACGTAAGAACCGTGTAAGAACCCATTGTCAAAAATTTCAAATTTTGA
TATCTCGATTTTGGAAAATACTTTGAGGTTTTACTAAGGACAACAGAAGG
TTTCTTTAATTTAAATATCTCAAACCATCTGATTATCCCTTTAATGTGTT
TCTTGGGTTATAATGTTCTTCAATTTTTGTTGCGATTTGTTTTCATTAGA
TCTTGGTTCAGAGTATGCAGATGACAATGGTAATATGAATTCTCAACGTA
ATATGAAACCTTTCAATGGTGGCAAAACACCAAATGGGAAAATGTTTATG
CAGAAAGACTTAAAAGAACTTGGAAGGTATCATTCAGTTAAATTCATTCG
TTAAAGAAACTCATTTTCTTTTTTTGTCAGCATTTTCGGATATTAAAACT
TTAGTCAATTCGCCGCAATTAGTTCTCGCCGCAATAAGCCATCTTATGGT
TATTTGTAATTGTTTTAACGTCAATTCGGTTTCTCTTAATCTCTTACCCG
AGGAACGATATATAGCTACTAACACCCGCTTTCATAGATTTGAGCGAATT
GAGATATTTATTGATTCATGATAGCATATATGATTCGCTAGTTTTTTTGG
ACCCACCTCGGAGGTCCTTTAAAGTAACTTGATTTTTTGCACAATGATGT
AAAATGGTAATGCGCAAAATGTGACGGAGCCCGATTTTCGAGAAAAAAAA
TATAAAACCGTTTTTACAGATTTTCATTGGATTTCTTCTTTATATTTCTA
TGTTTTTCCACACAAAAACATTATTGATAACAATGCCCACCATCAAGCAT
GATTCAATTGTCAATAAAACTGATTTTAGGAGCTGGAACTTTCTAAAAAT
CGCCGCAACAGCCGAGAATCGGCGGAAAAACGGTTTCTCTTGAATTTCTT
GAGCTGTGTTTTATATTTTTTCATAAAATTTTGCACACTAATGCAAAATG
GCAATACCTAAAATGTGACGGAGACTGATATTTGAAGAAAAAAAATTTCC
GGCCAAAAATGCCGGAAATGTGCCGGAATGACCGTTTTTTTGGCATTTTC
TTGAGATTTCATCATTGCTTAAAGATGTAAATTAGCAACACCTAAAATAT
GACCGAGTCCAATTTTTCGAAGAAAATTGGTTTTGCAGATTTTCATTGAA
TTTTTTCGTATTCTATCTTGGTTTTCTCAAACAAAAACATTGTTGATAAC
AGTGCCCACCATCAAGCGTGATTCAATTGTCAATAAAACTGATTTTTGAA
GCCGGAGGAACTTGTTTTTGCCGTATGAAACAAAAATTATTATGTAGTTA
TAGTTTGTAACAAATTAATTGAAACAATGGATCATTGCAACTCAAAATAT
CATACATTTCTTTTATAAATCTTTTTTTGAATTTTGCCTACACTTGCCTG
AAAACTATTGACACTTTATAGCTAATAAACTATTTCTCGTAATTTTGTCG
AATTTTGATGACCATTTGTCATGTCATGACCATTTTTCAGTCCCTATGCG
TTTCTTATTTTACGTCCTTTTCTATTTCCATTCTATATTTGTCATTAGGT
AGGTCCAATATGCATTATGCTTGTCTTCTTACAGTTGAATTCTTAGCATC
AAGAATATCAGTTATGGTTCTATATCGCTCTGAGAAAAAATGGAGCTATT
CTGTTGTTCGGCTCTAGTACTTAAGTAATTTCTTACCAATATATAATGGC
TTCGTCTTAAAGCTGGTATCCACTTTCGCGTGAAATGGGCGATAGTTTTT
TTCTTACCTGAAGAAAAGATTACGTCTTAAAAAAGTTTCGCGCGAACAAA
AAAAAAGTTGAAGGAAGTTCTACTTTTTGTATCCATTACTTCAATTTCGA
CCAATGGAATTGCTTCATTTTTCAACCGACCAATGACCTTACAAAAACGT
CAAAAAGTTTTCGCTCATGTTGCGCGAAAGTAGAAACCAGCCTTTATATC
GGAACCACTGATCTCTAACTACTTGACTAAATCGGGCTTCCCGTATAAAA
GGAAGCGTGTCCAGTTTTAAAGCCATCTCTCTTCAATTCTGTTCGTAAAC
AGCGCGATTCGAATGTTCGAATATTCAAAAATCCGAGATAAAACAGAAAA
CAACACGGTGGTCTAGTCGACTTCAACATTGGGCACACTTCCACGGGAAG
TCAATGATCAGTAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTATTTTTTTTGTATTTTGACCAGTTATGTCTTATG
TGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCAGGTAGGTCC
ATAAAAATATCGCTTGTTATTGTTTTATTTTATAGGAAATCTGCTAGAGG
AAATTCGAAGAATGCGTAAGGGACTTTTTATATCTATTTTAATATCACGT
AGGGAGGCCCGTGTCTGATACCCACCGTGTCGCTACGATTCACTTGGCAA
GTGAATACACCTTTGGCCGACCCATCCCTTTCNTCTGCTAGAGGAAATTC
GAAGAATGCGTAAGGGACTTTTTATATCTATTTTAATATCACGTAGGGAG
GCCCGTGTCTGATACCCACCGTGTCACTACGATTCACTTGGCAAGTGAAT
ACACCTTTGGCCGACCCATCCCATGTGAAAGTTTGTAACTCAACTGTATG
GGTTCACCTACAATTCAATTTCTATCGAAATCATGCTTTCATCAGGCTTG
AATAGGTGACTTTCAAAATTAAATTCTCGTTTAATTTAGAAATAAACTTT
TATTGCTAAAATAAAACCCGTCAATTTTCAGCGAAATGGCCTTTATTCAT
TCGTCACTAAGTCTTTCTGATTTCTTTTCACACTTCTAGCCCGTACAGCC
AATCACAATTAGATTTCTTTGAAATGTTGGACAAGAAGATTATGGAGGTA
TTATTCTTATTGTTCTGTTGTTTTTAGCTCGGTTGACTTTTTGCCCTGTT
TATTCTAATTGTAGAGTGGGCAAAAAGAAGGTAAAAAGTTGGCAGTTAAA
ATACTACTTGAAAAAGATTGAAAATGTCATTGCGTTGACGTCAAAAGCAT
TGACTTTAGACAGCAAACTTTGTGTCCATTTTAATTCACAATAAGATTAA
GTTAGGTCGAAAAGCGGATCGTCTAAACCAGAGCTTAATGATTTATGGTC
GAGATACGAG Coding sequence (CDS) from alignment at sc0000157:489631..495290- >TCONS_00012913 ID=TCONS_00012913|Name=TCONS_00012913|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000157:489631..495290- (Clytia hemisphaerica)
CCCGTACAGCCAATCACAATTAGATTTCTTTGAAATGTTGGACAAGAAGA
TTATGGAGGTATTATTCTTATTGTTCTGTTGTTTTTAGGAAATCTGCTAG
AGGAAATTCGAAGAATGCATCTTGGTTCAGAGTATGCAGATGACAATGGT
AATATGAATTCTCAACGTAATATGAAACCTTTCAATGGTGGCAAAACACC
AAATGGGAAAATGTTTATGCAGAAAGACTTAAAAGAACTTGGAAGATGGG
ATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCTGATGACGTAGGTG
AAAAATCCATCATCAAAGCCCGTACAGCCAATCACAATTAGATTTCTTTG
AAATGTTGGACAAGAAGATTATGGAGGTATTATTCTTATTGTTCTGTTGT
TTTTAGGAAATCTGCTAGAGGAAATTCGAAGAATGCATCTTGGTTCAGAG
TATGCAGATGACAATGGTAATATGAATTCTCAACGTAATATGAAACCTTT
CAATGGTGGCAAAACACCAAATGGGAAAATGTTTATGCAGAAAGACTTAA
AAGAACTTGGAAGATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAG
TTTCTGATGACGTAGGTGAAAAATCCATCATCAAAGCCCGTACAGCCAAT
CACAATTAGATTTCTTTGAAATGTTGGACAAGAAGATTATGGAGGTATTA
TTCTTATTGTTCTGTTGTTTTTAGGAAATCTGCTAGAGGAAATTCGAAGA
ATGCATCTTGGTTCAGAGTATGCAGATGACAATGGTAATATGAATTCTCA
ACGTAATATGAAACCTTTCAATGGTGGCAAAACACCAAATGGGAAAATGT
TTATGCAGAAAGACTTAAAAGAACTTGGAAGATGGGATGCAGGTCCACCA
AACCCTTGAATAATTCAGTTTCTGATGACGTAGGTGAAAAATCCATCATC
AAAGCCCGTACAGCCAATCACAATTAGATTTCTTTGAAATGTTGGACAAG
AAGATTATGGAGGTATTATTCTTATTGTTCTGTTGTTTTTAGGAAATCTG
CTAGAGGAAATTCGAAGAATGCATCTTGGTTCAGAGTATGCAGATGACAA
TGGTAATATGAATTCTCAACGTAATATGAAACCTTTCAATGGTGGCAAAA
CACCAAATGGGAAAATGTTTATGCAGAAAGACTTAAAAGAACTTGGAAGA
TGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCTGATGACGTA
GGTGAAAAATCCATCATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012913-exon-sc0000157-1575043694:495160..495290 | TCONS_00012913-exon-sc0000157-1575043694:495160..495290 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1575043694:493115..493241 | TCONS_00012913-exon-sc0000157-1575043694:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1575043694:490426..490455 | TCONS_00012913-exon-sc0000157-1575043694:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1575043694:489631..489951 | TCONS_00012913-exon-sc0000157-1575043694:489631..489951 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1510915933:495160..495290 | TCONS_00012913-exon-sc0000157-1510915933:495160..495290 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1510915933:493115..493241 | TCONS_00012913-exon-sc0000157-1510915933:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1510915933:490426..490455 | TCONS_00012913-exon-sc0000157-1510915933:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1510915933:489631..489951 | TCONS_00012913-exon-sc0000157-1510915933:489631..489951 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1491911889:495160..495290 | TCONS_00012913-exon-sc0000157-1491911889:495160..495290 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1491911889:493115..493241 | TCONS_00012913-exon-sc0000157-1491911889:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1491911889:490426..490455 | TCONS_00012913-exon-sc0000157-1491911889:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012913-exon-sc0000157-1491911889:489631..489951 | TCONS_00012913-exon-sc0000157-1491911889:489631..489951 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:489631..495290 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027967 | DUF4612 |
Blast
The following BLAST results are available for this feature:
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