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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012915 ID=TCONS_00012915|Name=TCONS_00012915|organism=Clytia hemisphaerica|type=transcript|length=1394bp
gtttgtattttaaggaaCAGCCAgctcattcatttgagggctatgcatgt
tagcctccactgatgcaagttacccgacttcatggTAGGTGTTCATTTCA
ATCTAGCTAACTGTATTTTTaaacaacattAGGCCTGTAGGTAGGCCCAT
TTTCGCCACATAATTACCAAACCAAATTGAAGAGTAATTGAACCAAGAAA
TTCTGGTAAAGTTCCATTGGGCTGTTGCAGAAAAAAAGCATATTATCCCC
TAGTGGATGacacaaattttaaaaatcacatTTGTTAAGTAACTTCAGCC
AACTTTTAAGCAAAAGATATCAGAATTCCATAAATTTCACCCAATTTTGT
GGCCgaagtatcggaattccatgaatttttaggaatttttgggattttac
aaCAGAAATTCTGCAactttttctaaactttttgctaAGGAAATTCCATG
TCCACTAGAGGATAATAAACTAAAACTGGAACAGCCCATTACTGTTCGAT
AGTAATCTGATAacagttcgattggttcgatatTTATTCAATCGCAGTTC
GATGTGTTTGATTTTGATCACCTGAAATCCAGAttatgattgttttctgc
cctaCATGTTGAAGCATGAGGCTTTCAACGGCACCTCTGATCATGCAATC
AAATCAATTACAATTAATTTTTAATATCCTAACTGTAATACAACTAAATC
GAATTAATCAAGAGGTTTTTGCGGTAAAgttcgataggtgttcgatCTGG
TTTGGTAGTTGACCATCCGTTGTTCAAAAGAATTTGATGGTCCAATTACA
AAAATCAGTTCAATAAGGTTCAAATGACATCATCTGGAAGTAAATAAAGG
TGAACAATATAAAATACAGTCAATATTCCAACCTCACCCTGGCCGATCAA
ACCACTCAGACATCTGATGCTGACCAATCAATATTGCATCATTCAGAAAT
GAAATTTAATTACAACTAAAATATGTTCAAGTGAAATCACAGCAGAGCAT
TTGAAAGAGCAGTGATGTGACTTGACTAGTGATTCAACATGGTGccattt
ttttattcatttaacGCAAACGCTCACTGTGGCAAATTGACCATATATGG
AAAATAGTCTATATTTAGCACAGCAATAAAACGAGCCGTAACACACCACA
ACGAAGGTTTGTTTGCTATCAAGCACCTGTATAAGTGtagtgaaaacttt
ttgaaaggaGGTTAGACATCACACCTGACACTCTGGCTatcaaaatgcaa
aaacaaTTGTCTAAATTTCATGTTTCATTAAAATCAATCCTTTTATTTTA
GGTGGGGAACATTAAaaagtaccgtgagattgggtaacttgcatcagtgg
aggctaacatgcatagccctcaaatgaaagacctggctggtcat Run BLAST on NCBI transcript from alignment at sc0000157:509470..511122- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012915 ID=TCONS_00012915|Name=TCONS_00012915|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at sc0000157:509470..511122- (Clytia hemisphaerica)
GTTTGTATTTTAAGGAACAGCCAGCTCATTCATTTGAGGGCTATGCATGT
TAGCCTCCACTGATGCAAGTTACCCGACTTCATGGTAGGTGTTCATTTCA
ATCTAGCTAACTGTATTTTTATACAACAAATTATTCTCTTATGCTTCCAT
CTAGGTCCGCGTACAATTTTTATTTTTTATTTTTTCGAAGGGGATTCCCC
TGATATCTACATCCGCTCAGTGATTTTTCTATAGGGCACACAACACCCAT
ATGTATATATAAAAAAAAGAAAGAAAAATGTATAACCTGTGTAACATTGT
AAACAAAACAGAGATATTTTATATTTTTTATTTTATTATACCAAGTATTT
TGGTGATTAAAGAGATTTGAAAAAAAAACAAACAACATTAGGCCTGTAGG
TAGGCCCATTTTCGCCACATAATTACCAAACCAAATTGAAGAGTAATTGA
ACCAAGAAATTCTGGTAAAGTTCCATTGGGCTGTTGCAGAAAAAAAGCAT
ATTATCCCCTAGTGGATGACACAAATTTTAAAAATCACATTTGTTAAGTA
ACTTCAGCCAACTTTTAAGCAAAAGATATCAGAATTCCATAAATTTCACC
CAATTTTGTGGCCGAAGTATCGGAATTCCATGAATTTTTAGGAATTTTTG
GGATTTTACAACAGAAATTCTGCAACTTTTTCTAAACTTTTTGCTAAGGA
AATTCCATGTCCACTAGAGGATAATAAACTAAAACTGGAACAGCCCATTA
CTGTTCGATAGTAATCTGATAACAGTTCGATTGGTTCGATATTTATTCAA
TCGCAGTTCGATGTGTTTGATTTTGATCACCTGAAATCCAGATTATGATT
GTTTTCTGCCCTACATGTTGAAGCATGAGGCTTTCAACGGCACCTCTGAT
CATGCAATCAAATCAATTACAATTAATTTTTAATATCCTAACTGTAATAC
AACTAAATCGAATTAATCAAGAGGTTTTTGCGGTAAAGTTCGATAGGTGT
TCGATCTGGTTTGGTAGTTGACCATCCGTTGTTCAAAAGAATTTGATGGT
CCAATTACAAAAATCAGTTCAATAAGGTTCAAATGACATCATCTGGAAGT
AAATAAAGGTGAACAATATAAAATACAGTCAATATTCCAACCTCACCCTG
GCCGATCAAACCACTCAGACATCTGATGCTGACCAATCAATATTGCATCA
TTCAGAAATGAAATTTAATTACAACTAAAATATGTTCAAGTGAAATCACA
GCAGAGCATTTGAAAGAGCAGTGATGTGACTTGACTAGTGATTCAACATG
GTGCCATTTTTTTATTCATTTAACGCAAACGCTCACTGTGGCAAATTGAC
CATATATGGAAAATAGTCTATATTTAGCACAGCAATAAAACGAGCCGTAA
CACACCACAACGAAGGTTTGTTTGCTATCAAGCACCTGTATAAGTGTAGT
GAAAACTTTTTGAAAGGAGGTTAGACATCACACCTGACACTCTGGCTATC
AAAATGCAAAAACAATTGTCTAAATTTCATGTTTCATTAAAATCAATCCT
TTTATTTTAGGTGGGGAACATTAAAAAGTACCGTGAGATTGGGTAACTTG
CATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAAAGACCTGGCTGGT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012915-exon-sc0000157-1575043694:511003..511122 | TCONS_00012915-exon-sc0000157-1575043694:511003..511122 | Clytia hemisphaerica | exon |
| TCONS_00012915-exon-sc0000157-1575043694:509470..510743 | TCONS_00012915-exon-sc0000157-1575043694:509470..510743 | Clytia hemisphaerica | exon |
| TCONS_00012915-exon-sc0000157-1510915933:511003..511122 | TCONS_00012915-exon-sc0000157-1510915933:511003..511122 | Clytia hemisphaerica | exon |
| TCONS_00012915-exon-sc0000157-1510915933:509470..510743 | TCONS_00012915-exon-sc0000157-1510915933:509470..510743 | Clytia hemisphaerica | exon |
| TCONS_00012915-exon-sc0000157-1491911889:511003..511122 | TCONS_00012915-exon-sc0000157-1491911889:511003..511122 | Clytia hemisphaerica | exon |
| TCONS_00012915-exon-sc0000157-1491911889:509470..510743 | TCONS_00012915-exon-sc0000157-1491911889:509470..510743 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:509470..511122 - |
Blast
The following BLAST results are available for this feature:
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