|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012916 ID=TCONS_00012916|Name=TCONS_00012916|organism=Clytia hemisphaerica|type=transcript|length=3597bp
ccaaaaagtgcacTTTAGATAAATCTTTGACTTTAAGAGCAATTTTAGAC
ATGATCAAGCttaagattcatttcaaaacatattttcatgGAAGAAATCC
CTAGGTACTTTGAAGAAatgtcattttgagaaaatttttctgaCCTGATT
TTGAGAGCAATTAGCTGGCTTGGCCACAAGTGTcacattgatatttttgt
atatttctgaagtctttatggtcatctttaactttcaattaaaatttcca
tGTAACACTTTTAAGGCCTAAAATGGCGGTTAAACATAGCTTTTCGctca
atttttagtattttcaattAGCTTTTAAAGCCTAGGCCTTAAGTTCCACC
ACTGGAACAAATCATTTTTAGTTTGTCTTTTGGCCATATTACCCAATCCT
AAAATCAAACCTATGTGCTCTAATGCCATTTGCACAATTTAtcttcgaaa
tttttttaaagtcatcAAAGCCAATTTTTCCTTTAGCAACGCATTGTTTT
TCCCTAGCAACCAGGCATCcagctttatcaaaattttccaaactgtttcc
tAGTGGTTCCAGACCATGGTAAATGTCTTAGATTGCAATAGCAGAGTCTT
GGACACAATTTTCACTGAATTTTAAGGCAAATTAGGGTTGCAGGGACAGA
AATAGCAGACCCAAACAGGTAACGAGGAAGCAACTTTGGCTGATGCTTGT
TGCAAAACCCCAAGTCAAATCAAATTGATTccaatgtttttaacatttat
tGCAGATGTATTTGTACTATTTTGTCATTATAGATACTACACAGACCTAG
AAAGGAACTTTGAAGAAAGTTATGCTGCCTGATTTTGACCTAGTAGTGGG
CACTTTAAGTGTTTTGGTCATCAGCATCGAGCTGAATGAAGTTAGAAAAC
TCCAGAAGGCCAAagggttattttgaatttagaaatctgtagacaaaaga
tatattaaaGCATTTGACAAGGTAAAATTCTTTGAGACCTTTGAGATCAG
AAAAGAGTGTAGAAGAAGGGCACCAAGAGTTGTTGAAAGAGATAAGACTA
TCCAAGGCTATCTTTTGAAGGGTAAATATAAGTTTAGAGGTGGTATTGTC
AGTGAGACCTCAAAGTTGACAGTCATATTGAAGGTGGGAATGAAATAGAG
CATAatgtaaaaactaaaataccTCACTCAATTTTACccttaaataatta
aaaaaattttgaggctcttgctcaaagtgccaaaatatgAGAATAGTGGG
CTTCAACAAAAATCTGTTGGGTtcggtaaaaaaagaaaatgtataCATCt
tttatttccttaaaaattgtTCAGGTCTGTGAGTTTTGTATACATCTTTT
AAAGGACACTCCTTTTGCCCTTTGTGACACAATTTACTTTCTTTACAAAC
TTTTCAAGACAAGATTCTTGTACATAAATCCATGGAGACTACTCGTATGT
ATCAGTCTTTATCTATATTGTTTTACCAGACAATCTTTTTCTGAGATTTT
AATTTGAGAATAGATCTGTCCTTAATCCAATTTTTGATGTATATAGAATG
GAAATGTGCATGAAGATAAGAAGGATGTGGTGAATTGATAGCTAGTACAT
GCACAAAACATCTTAATAATTCCTGTCGCCTTttagaatatttatttttg
ccttattttaaccctattcatactaggcttttaggggcggttcagaacta
gggggggcttttcctgtaccaccccttaacttttgatctagtaggtcttt
ttggatgaaatttggcacacaagatccttgtgacgtaaggtaacttttga
caaaaaaaatttttgatgacgtcactcatcatgcccaaagtgagtNATAG
ATACTACACAGACCTAGAAAGGAACTTTGAAGAAAGTTATGCTGCCTGAT
TTTGACCTAGTAGTGGGCACTTTAAGTGTTTTGGTCATCAGCATCGAGCT
GAATGAAGTTAGAAAACTCCAGAAGGCCAAagggttattttgaatttaga
aatctgtagacaaaagatatattaaaGCATTTGACAAGGTAAAATTCTTT
GAGACCTTTGAGATCAGAAAAGAGTGTAGAAGAAGGGCACCAAGAGTTGT
TGAAAGAGATAAGACTATCCAAGGCTATCTTTTGAAGGGTAAATATAAGT
TTAGAGGTGGTATTGTCAGTGAGACCTCAAAGTTGACAGTCATATTGAAG
GTGGGAATGAAATAGAGCATAatgtaaaaactaaaataccTCACTCAATT
TTACccttaaataattaaaaaaattttgaggctcttgctcaaagtgccaa
aatatgAGAATAGTGGGCTTCAACAAAAATCTGTTGGGTtcggtaaaaaa
agaaaatgtataCATCttttatttccttaaaaattgtTCAGGTCTGTGAG
TTTTGTATACATCTTTTAAAGGACACTCCTTTTGCCCTTTGTGACACAAT
TTACTTTCTTTACAAACTTTTCAAGACAAGATTCTTGTACATAAATCCAT
GGAGACTACTCGTATGTATCAGTCTTTATCTATATTGTTTTACCAGACAA
TCTTTTTCTGAGATTTTAATTTGAGAATAGATCTGTCCTTAATCCAATTT
TGATGTATATAGAATGGAAATGTGCATGAAAATAAAAAGGATGCGGTGAA
TTGATAGCTAGTACATGCACAAAACATCTTAATTCCTGTCGCCTTttaga
atatttatttttgccttattttaaagtgttttttttttactcaaaTGCAG
CAAATATATGTTAATATGGAGCGTAAACTGAATGcatttcataaaaataa
atcaaagtcGCAAACTGatttatataaaccagacaagAACATTGATGATC
ACCTACATGAACTGGCAACATTGAGTGGTGTCAACCTTGACAGAGATGTT
TTCAATATCGTTATTGATTTGCTAAGACTAAACGTCAATCCAAATACTAT
TCTAGACATTATGCGGAAGATGGCGCAACAGAAAGGAATGCGACCATCCA
AAAGCTCAGATAATATTGCAGCAAGACAAAACAGGAAAAGTGCATCtgaa
gcaaaaatgaaaaattactctGCCTATTTGGAATCGGGTGAATAAAATGG
TTAtattaaagtttgtttttgttgttcgTTTGCTTCTTTGTATTTTGCAA
ATTTCGACTTCATTAAATAGTATAAGTcattttttgacactttgactttt
tggtttttgtatttCGAATCATAAAACTAAATCTTTTCCAGAATtaacaa
attattttaataaaagatGAATCTTTATGTTACTCATCAGACATAAGGTA
CAGTGGGGGAAAAATGAGatataattttcttaaattgttttatttaaagC
TTCACAAGTAGATAGAACAGTAACGAGTTTTATTTTGTTACTTAAAGTAT
CTAGGTGACgatttttaaaatgttaatGTGAGAATCGAttgaaagttaac
ttttatttcattgtaaaGTTGCTAaagttgtaaatatttttttcatacaa
TTTTCTATTTATGATTTACgacattttatacacgataaACTATTAACCTC
TTCTCTGTTTATTATTTTGGTGTATTTTATTACAAAATGCAAAGGCA Run BLAST on NCBI protein sequence of TCONS_00012916-protein >TCONS_00012916-protein ID=TCONS_00012916-protein|Name=TCONS_00012916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MQQIYVNMERKLNAFHKNKSKSQTDLYKPDKNIDDHLHELATLSGVNLDR
DVFNIVIDLLRLNVNPNTILDIMRKMAQQKGMRPSKSSDNIAARQNRKSA
SEAKMKNYSAYLESGE Run BLAST on NCBI transcript from alignment at sc0000157:26750..30346 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012916 ID=TCONS_00012916|Name=TCONS_00012916|organism=Clytia hemisphaerica|type=transcript|length=3597bp|location=Sequence derived from alignment at sc0000157:26750..30346 (Clytia hemisphaerica)
TGCCTTTGCATTTTGTAATAAAATACACCAAAATAATAAACAGAGAAGAG
GTTAATAGTttatcgtgtataaaatgtcGTAAATCATAAATAGAAAAttg
tatgaaaaaaatatttacaacttTAGCAACtttacaatgaaataaaagtt
aactttcaaTCGATTCTCACattaacattttaaaaatcGTCACCTAGATA
CTTTAAGTAACAAAATAAAACTCGTTACTGTTCTATCTACTTGTGAAGct
ttaaataaaacaatttaagaaaattatatCTCATTTTTCCCCCACTGTAC
CTTATGTCTGATGAGTAACATAAAGATTCatcttttattaaaataatttg
ttaATTCTGGAAAAGATTTAGTTTTATGATTCGaaatacaaaaaccaaaa
agtcaaagtgtcaaaaaatgACTTATACTATTTAATGAAGTCGAAATTTG
CAAAATACAAAGAAGCAAAcgaacaacaaaaacaaactttaataTAACCA
TTTTATTCACCCGATTCCAAATAGGCagagtaatttttcatttttgcttc
aGATGCACTTTTCCTGTTTTGTCTTGCTGCAATATTATCTGAGCTTTTGG
ATGGTCGCATTCCTTTCTGTTGCGCCATCTTCCGCATAATGTCTAGAATA
GTATTTGGATTGACGTTTAGTCTTAGCAAATCAATAACGATATTGAAAAC
ATCTCTGTCAAGGTTGACACCACTCAATGTTGCCAGTTCATGTAGGTGAT
CATCAATGTTcttgtctggtttatataaatCAGTTTGCgactttgattta
tttttatgaaatgCATTCAGTTTACGCTCCATATTAACATATATTTGCTG
CAtttgagtaaaaaaaaaacactttaaaataaggcaaaaataaatattct
aaAAGGCGACAGGAATTAAGATGTTTTGTGCATGTACTAGCTATCAATTC
ACCGCATCCTTTTTATTTTCATGCACATTTCCATTCTATATACATCAAAA
TTGGATTAAGGACAGATCTATTCTCAAATTAAAATCTCAGAAAAAGATTG
TCTGGTAAAACAATATAGATAAAGACTGATACATACGAGTAGTCTCCATG
GATTTATGTACAAGAATCTTGTCTTGAAAAGTTTGTAAAGAAAGTAAATT
GTGTCACAAAGGGCAAAAGGAGTGTCCTTTAAAAGATGTATACAAAACTC
ACAGACCTGAacaatttttaaggaaataaaaGATGtatacattttctttt
tttaccgaACCCAACAGATTTTTGTTGAAGCCCACTATTCTcatattttg
gcactttgagcaagagcctcaaaatttttttaattatttaaggGTAAAAT
TGAGTGAggtattttagtttttacatTATGCTCTATTTCATTCCCACCTT
CAATATGACTGTCAACTTTGAGGTCTCACTGACAATACCACCTCTAAACT
TATATTTACCCTTCAAAAGATAGCCTTGGATAGTCTTATCTCTTTCAACA
ACTCTTGGTGCCCTTCTTCTACACTCTTTTCTGATCTCAAAGGTCTCAAA
GAATTTTACCTTGTCAAATGCtttaatatatcttttgtctacagatttct
aaattcaaaataaccctTTGGCCTTCTGGAGTTTTCTAACTTCATTCAGC
TCGATGCTGATGACCAAAACACTTAAAGTGCCCACTACTAGGTCAAAATC
AGGCAGCATAACTTTCTTCAAAGTTCCTTTCTAGGTCTGTGTAGTATCTA
TNactcactttgggcatgatgagtgacgtcatcaaaaattttttttgtca
aaagttaccttacgtcacaaggatcttgtgtgccaaatttcatccaaaaa
gacctactagatcaaaagttaaggggtggtacaggaaaagccccccctag
ttctgaaccgcccctaaaagcctagtatgaatagggttaaaataaggcaa
aaataaatattctaaAAGGCGACAGGAATTATTAAGATGTTTTGTGCATG
TACTAGCTATCAATTCACCACATCCTTCTTATCTTCATGCACATTTCCAT
TCTATATACATCAAAAATTGGATTAAGGACAGATCTATTCTCAAATTAAA
ATCTCAGAAAAAGATTGTCTGGTAAAACAATATAGATAAAGACTGATACA
TACGAGTAGTCTCCATGGATTTATGTACAAGAATCTTGTCTTGAAAAGTT
TGTAAAGAAAGTAAATTGTGTCACAAAGGGCAAAAGGAGTGTCCTTTAAA
AGATGTATACAAAACTCACAGACCTGAacaatttttaaggaaataaaaGA
TGtatacattttctttttttaccgaACCCAACAGATTTTTGTTGAAGCCC
ACTATTCTcatattttggcactttgagcaagagcctcaaaatttttttaa
ttatttaaggGTAAAATTGAGTGAggtattttagtttttacatTATGCTC
TATTTCATTCCCACCTTCAATATGACTGTCAACTTTGAGGTCTCACTGAC
AATACCACCTCTAAACTTATATTTACCCTTCAAAAGATAGCCTTGGATAG
TCTTATCTCTTTCAACAACTCTTGGTGCCCTTCTTCTACACTCTTTTCTG
ATCTCAAAGGTCTCAAAGAATTTTACCTTGTCAAATGCtttaatatatct
tttgtctacagatttctaaattcaaaataaccctTTGGCCTTCTGGAGTT
TTCTAACTTCATTCAGCTCGATGCTGATGACCAAAACACTTAAAGTGCCC
ACTACTAGGTCAAAATCAGGCAGCATAACTTTCTTCAAAGTTCCTTTCTA
GGTCTGTGTAGTATCTATAATGACAAAATAGTACAAATACATCTGCaata
aatgttaaaaacattggAATCAATTTGATTTGACTTGGGGTTTTGCAACA
AGCATCAGCCAAAGTTGCTTCCTCGTTACCTGTTTGGGTCTGCTATTTCT
GTCCCTGCAACCCTAATTTGCCTTAAAATTCAGTGAAAATTGTGTCCAAG
ACTCTGCTATTGCAATCTAAGACATTTACCATGGTCTGGAACCACTagga
aacagtttggaaaattttgataaagctgGATGCCTGGTTGCTAGGGAAAA
ACAATGCGTTGCTAAAGGAAAAATTGGCTTTgatgactttaaaaaaattt
cgaagaTAAATTGTGCAAATGGCATTAGAGCACATAGGTTTGATTTTAGG
ATTGGGTAATATGGCCAAAAGACAAACTAAAAATGATTTGTTCCAGTGGT
GGAACTTAAGGCCTAGGCTTTAAAAGCTaattgaaaatactaaaaattga
gCGAAAAGCTATGTTTAACCGCCATTTTAGGCCTTAAAAGTGTTACatgg
aaattttaattgaaagttaaagatgaccataaagacttcagaaatataca
aaaatatcaatgtgACACTTGTGGCCAAGCCAGCTAATTGCTCTCAAAAT
CAGGtcagaaaaattttctcaaaatgacatTTCTTCAAAGTACCTAGGGA
TTTCTTCcatgaaaatatgttttgaaatgaatcttaaGCTTGATCATGTC
TAAAATTGCTCTTAAAGTCAAAGATTTATCTAAAgtgcactttttgg Coding sequence (CDS) from alignment at sc0000157:26750..30346 >TCONS_00012916 ID=TCONS_00012916|Name=TCONS_00012916|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000157:26750..30346 (Clytia hemisphaerica)
TTATTCACCCGATTCCAAATAGGCagagtaatttttcatttttgcttcaG
ATGCACTTTTCCTGTTTTGTCTTGCTGCAATATTATCTGAGCTTTTGGAT
GGTCGCATTCCTTTCTGTTGCGCCATCTTCCGCATAATGTCTAGAATAGT
ATTTGGATTGACGTTTAGTCTTAGCAAATCAATAACGATATTGAAAACAT
CTCTGTCAAGGTTGACACCACTCAATGTTGCCAGTTCATGTAGGTGATCA
TCAATGTTcttgtctggtttatataaatCAGTTTGCgactttgatttatt
tttatgaaatgCATTCAGTTTACGCTCCATATTAACATATATTTGCTGCA
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012916-exon-sc0000157-1491911889:26750..30346 | TCONS_00012916-exon-sc0000157-1491911889:26750..30346 | Clytia hemisphaerica | exon |
| TCONS_00012916-exon-sc0000157-1510915933:26750..30346 | TCONS_00012916-exon-sc0000157-1510915933:26750..30346 | Clytia hemisphaerica | exon |
| TCONS_00012916-exon-sc0000157-1575043694:26750..30346 | TCONS_00012916-exon-sc0000157-1575043694:26750..30346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:26750..30346 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024332 | MOZART2 |
Blast
The following BLAST results are available for this feature:
|
