TCONS_00012918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012918
Unique NameTCONS_00012918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012918 ID=TCONS_00012918|Name=TCONS_00012918|organism=Clytia hemisphaerica|type=transcript|length=632bp
CCCTTTAAAGAAGCAAAAACCTGTTTTAAAAGTTTCTAGTATATAGGTAT
GAATAAATAAACATTCCAATCAGAGAAAGATTTCTCTCCTCTTCTCACAG
GTGATCCTTCTTGTGATTACCATTTAAAGTTTTTACTTTTCAAATCCGAA
TGAAAAACAAAAGGAAAGTGTTTTCCCTCAGATTAAATAAAAAGAAGATT
AAAAAGATAGCATTAACCTCTTTCATTTATGTCAGCTATCAAATAATAAA
CAAAAAGCATCCACAAAAGCACCCATTTTCCAGTAGAAAATGGTACATTT
GTTTTATTGACAGCATTATCTCTCTAATTCTCCCTATTATAGCCCctcta
aaattcaaatttttcaactaTATAATGTATAATCATGTTatatatgcatt
atgttttatgcatttttggaCCTGCCAATCCTTGTCACTCAAATTTCTAT
ATTGTTATTTTGCTGTAGTACGCTTTATTTTTTCGCCCTGCAGGGGGAAA
CCAAGGTGTAATAGGTGCAGTTTTTCTTCAAACAGGAAAAACTGTGGTGG
TCAAACGaggaaaaatagatttttgcaTTTGTATAAGACTGATTCAGCAA
GATCCAGTTACAGTAGGCACTCTATCTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00012918-protein

>TCONS_00012918-protein ID=TCONS_00012918-protein|Name=TCONS_00012918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MKNKRKVFSLRLNKKKIKKIALTSFIYVSYQIINKKHPQKHPFSSRKWYI
CFIDSIISLILPIIAPLKFKFFNYIMYNHVIYALCFMHFWTCQSLSLKFL
YCYFAVVRFIFSPCRGKPRCNRCSFSSNRKNCGGQTRKNRFLHLYKTDSA
RSSYSRHSIFN
Run BLAST on NCBI

transcript from alignment at sc0000157:38369..39000

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012918 ID=TCONS_00012918|Name=TCONS_00012918|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0000157:38369..39000 (Clytia hemisphaerica)
GTTGAAGATAGAGTGCCTACTGTAACTGGATCTTGCTGAATCAGTCTTAT
ACAAAtgcaaaaatctatttttcctCGTTTGACCACCACAGTTTTTCCTG
TTTGAAGAAAAACTGCACCTATTACACCTTGGTTTCCCCCTGCAGGGCGA
AAAAATAAAGCGTACTACAGCAAAATAACAATATAGAAATTTGAGTGACA
AGGATTGGCAGGtccaaaaatgcataaaacataatgcatatatAACATGA
TTATACATTATAtagttgaaaaatttgaattttagagGGGCTATAATAGG
GAGAATTAGAGAGATAATGCTGTCAATAAAACAAATGTACCATTTTCTAC
TGGAAAATGGGTGCTTTTGTGGATGCTTTTTGTTTATTATTTGATAGCTG
ACATAAATGAAAGAGGTTAATGCTATCTTTTTAATCTTCTTTTTATTTAA
TCTGAGGGAAAACACTTTCCTTTTGTTTTTCATTCGGATTTGAAAAGTAA
AAACTTTAAATGGTAATCACAAGAAGGATCACCTGTGAGAAGAGGAGAGA
AATCTTTCTCTGATTGGAATGTTTATTTATTCATACCTATATACTAGAAA
CTTTTAAAACAGGTTTTTGCTTCTTTAAAGGG

Coding sequence (CDS) from alignment at sc0000157:38369..39000

>TCONS_00012918 ID=TCONS_00012918|Name=TCONS_00012918|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000157:38369..39000 (Clytia hemisphaerica)
GTTGAAGATAGAGTGCCTACTGTAACTGGATCTTGCTGAATCAGTCTTAT
ACAAAtgcaaaaatctatttttcctCGTTTGACCACCACAGTTTTTCCTG
TTTGAAGAAAAACTGCACCTATTACACCTTGGTTTCCCCCTGCAGGGCGA
AAAAATAAAGCGTACTACAGCAAAATAACAATATAGAAATTTGAGTGACA
AGGATTGGCAGGtccaaaaatgcataaaacataatgcatatatAACATGA
TTATACATTATAtagttgaaaaatttgaattttagagGGGCTATAATAGG
GAGAATTAGAGAGATAATGCTGTCAATAAAACAAATGTACCATTTTCTAC
TGGAAAATGGGTGCTTTTGTGGATGCTTTTTGTTTATTATTTGATAGCTG
ACATAAATGAAAGAGGTTAATGCTATCTTTTTAATCTTCTTTTTATTTAA
TCTGAGGGAAAACACTTTCCTTTTGTTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007248XLOC_007248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012918-exon-sc0000157-1491911889:38369..39000TCONS_00012918-exon-sc0000157-1491911889:38369..39000Clytia hemisphaericaexon
TCONS_00012918-exon-sc0000157-1510915933:38369..39000TCONS_00012918-exon-sc0000157-1510915933:38369..39000Clytia hemisphaericaexon
TCONS_00012918-exon-sc0000157-1575043694:38369..39000TCONS_00012918-exon-sc0000157-1575043694:38369..39000Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012918-proteinTCONS_00012918-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:38369..39000 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.335487	0.654305	0.189928	0.0929073	1.01795	0.804399	0.431321	0.504747	0.424063	0.612815	0	0.446865	0	0.579286	0	0	0.125924	0.193603	0.178315	0.0932969	0.40546	0.474646	0	0	0.630346	0.0803669	0.460019	1.3501	0.186182	0.0948451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top