TCONS_00012919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012919
Unique NameTCONS_00012919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012919 ID=TCONS_00012919|Name=TCONS_00012919|organism=Clytia hemisphaerica|type=transcript|length=542bp
aaaaatatatgTACATCATCATGGAATAATGCCTTGTAATACCTAGCAGC
CAATTTCACCTCACTAAAATGTGGGAGAGCTTAAGTCTGGCAAGTTTTCA
GCGACAatctgattttttcaaaattagaaataggCAATTACACCATTGCA
TTGCATTGattaaaaaagcttcaaaaatagATAATAAGAGTTTCTTTTGG
GAATTATGTCCATAGTatagaggtctgcaattcagactaTAAAATAGTCT
TTTATCTTTTACAAGCCTCTCTTTTGTCTGGCAGCAATCAAACCAAAACT
AAAATGACTTAGAAACCTGCAGGTCTAAAAATGCATAAAACACAAAACAT
ACTAAGCAGTTATTGCACAAAGTCGGATCCAATATGCAAACAAAAATATT
CAAATTCCAATTTATAACGTCATAAATCTGGTTTCTTGGAAGTTTTTTTC
AAAAGTCTTATTTTTATTTTGTGACGTAACGTCAAAAAGAGATGCTCAAT
TGTCATTGAACTCGTTGTTTGATATCAATTTTTGAAATATGT
Run BLAST on NCBI

transcript from alignment at sc0000157:39143..39684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012919 ID=TCONS_00012919|Name=TCONS_00012919|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at sc0000157:39143..39684 (Clytia hemisphaerica)
ACATATTTCAAAAATTGATATCAAACAACGAGTTCAATGACAATTGAGCA
TCTCTTTTTGACGTTACGTCACAAAATAAAAATAAGACTTTTGAAAAAAA
CTTCCAAGAAACCAGATTTATGACGTTATAAATTGGAATTTGAATATTTT
TGTTTGCATATTGGATCCGACTTTGTGCAATAACTGCTTAGTATGTTTTG
TGTTTTATGCATTTTTAGACCTGCAGGTTTCTAAGTCATTTTAGTTTTGG
TTTGATTGCTGCCAGACAAAAGAGAGGCTTGTAAAAGATAAAAGACTATT
TTAtagtctgaattgcagacctctatACTATGGACATAATTCCCAAAAGA
AACTCTTATTATctatttttgaagcttttttaatCAATGCAATGCAATGG
TGTAATTGcctatttctaattttgaaaaaatcagatTGTCGCTGAAAACT
TGCCAGACTTAAGCTCTCCCACATTTTAGTGAGGTGAAATTGGCTGCTAG
GTATTACAAGGCATTATTCCATGATGATGTAcatatattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007249XLOC_007249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012919-exon-sc0000157-1491911889:39143..39684TCONS_00012919-exon-sc0000157-1491911889:39143..39684Clytia hemisphaericaexon
TCONS_00012919-exon-sc0000157-1510915933:39143..39684TCONS_00012919-exon-sc0000157-1510915933:39143..39684Clytia hemisphaericaexon
TCONS_00012919-exon-sc0000157-1575043694:39143..39684TCONS_00012919-exon-sc0000157-1575043694:39143..39684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:39143..39684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319619	0.522069	0.243366	0.236035	0.431025	0.681203	0.136974	0.128233	0.448895	0.69012	0	0.212865	0	0	0	0.0649223	0	0.0819759	0	0.11948	0.831598	0.452196	0	0	0.114387	0.408351	0.876523	1.09136	0.118251	0.120479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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