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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012920 ID=TCONS_00012920|Name=TCONS_00012920|organism=Clytia hemisphaerica|type=transcript|length=1938bp
GTACTTCTTTCATAAAATTACATAATCTTTGCTATatacaatatttttta
aatcagtATTTTACAATTGATAAACCATTAGACTAAAAAAAACCATATGG
AAGAAATTTTAATGGTCTGGAAAAAAGTTGCCAAAAGTACTTCAAGGATG
ATATTTCCCTTATATTTGACCTCTTTGCTGCTTTTGGTGATCTAATAATT
CTTAAAACTTTTACgatacaaaaaaatgaaacaacttTGATTGATCAAGA
ATAggacaaaaaaattatcttcaatTTATATGAATGttggaaaaatttaa
gaattttaGATAATTTTGGTGGATCATCATGGTCTTtgtttaaaaactga
aaaacctTGATATACACAACCAACAAACCAAACGACCTTCCCTTTTACCT
GGTATATTTGGAAGGTATTTCAAAATCCAGATTGCACATCATATTTGAAT
TCCAACAATTTAATGGTCGAAGTATTGAAAACACTGACAATTAATGGTGA
TAAtgcttttaattttgtttttaatggaaATTTGGGATTCAAGTAGAAAG
TCTCATTTGTTTTCACAATAATGTCAGAGTTGGATGGTGCTTCAACTGCT
AGCTCACCTTTCAAAACAATGAATGTGAAAGGGTCATGCTGGTAACTGGA
GTCAATCTCAAAAATGACTTCATTAGTTTCAGCAACTGTATAATCCATTT
TCAGAACCATTTCGTAAAGAAAAACACGTGGTAAATCaataaaattcttt
tgttctttgATAAGGTTGAGCACATGGCTTGGATGCAAATATGCTAACTG
CTCATTGTTTAATTCAGCTGTCGATTCCAAAAAGACTTGCCAGATCTTTT
TCCATTCCATAAATTTAGCACATTCAATAGGATAGTTTTTCAGCAATGCT
TCAAAATGCCATTGATGAAGTGTGACGCAATGACATGTTTGTTTCACTTT
AGAAGAATACAGCATATTGTTGGTATTACCCAATAAATTTTCCTCACAAA
AAGCAGTACAAGAACCACTGCACTCCACTTCTGCAAATGCAACCTTTCTC
AACAGTTCAACTGTTCCTTCCAAGATCAAAAACAAAGAACTGTTTGATTC
ATTCTCAAATGTGAGCAGTGTATTGGTTGGATGAACCTCAATGAATTGTT
TTGATAGTTGGTTTGTCAATTCCATTACAGCCTCTTTGGACCATTCATAA
AACAATGGGCATTCATGTAAACGACTCTGTAATATAGCTCTTGGTATATC
GATCGATAGAAAAAGATTTGATGAATCAAGATATCCTTGTTTGATGAAAT
AAGACTTGACATCTATTGAAGGTTCATTATCAAGAAGAATCTTTTTCACA
TTTGAATGTGGTAACATTGCAAAATGACATTCACTCTGATTATCAACAGA
AACAGTGCATGTACATGGCTTACCATAAAGACTAGATAATTCACCAAAGA
AATCTCCACGTTTCAACTGCCGAATAACAGTTTTACCATCACTTCCAATA
ACATTGAAAATACCTTTGATAACAACAAAAATGCCCAAAGGTTTATCACC
TTCCTTAATAATAACAGTACCAGGAGGATATGTTTTTTCAACTACCTCAT
ATCTCAACTGTTGAACATTCTCATTATAAATTGTAATTGGTAGTCTCTGC
ATAGATTTGATGAAGACCTGGAAAGATGNCGAATTATTGTCTACTGACTT
CTCAGAGACGGTGAATTGGGAGaaatgagagcgactgtattcacttcaat
GTTTACTTTGCATTTCAGAGAGAACATTAGaacaagaaattgaaattgtc
AAACAATGAACTATTACAGTCAACAAGATGACACATgaatatataaaaac
ataaaaaagtattaatcaaagTTTCACAATTCTAGAATTCATCTAAAATG
AGCTACTATGGCACAtccaaagaaaataatttacctTG Run BLAST on NCBI protein sequence of TCONS_00012920-protein >TCONS_00012920-protein ID=TCONS_00012920-protein|Name=TCONS_00012920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MQRLPITIYNENVQQLRYEVVEKTYPPGTVIIKEGDKPLGIFVVIKGIFN
VIGSDGKTVIRQLKRGDFFGELSSLYGKPCTCTVSVDNQSECHFAMLPHS
NVKKILLDNEPSIDVKSYFIKQGYLDSSNLFLSIDIPRAILQSRLHECPL
FYEWSKEAVMELTNQLSKQFIEVHPTNTLLTFENESNSSLFLILEGTVEL
LRKVAFAEVECSGSCTAFCEENLLGNTNNMLYSSKVKQTCHCVTLHQWHF
EALLKNYPIECAKFMEWKKIWQVFLESTAELNNEQLAYLHPSHVLNLIKE
QKNFIDLPRVFLYEMVLKMDYTVAETNEVIFEIDSSYQHDPFTFIVLKGE
LAVEAPSNSDIIVKTNETFYLNPKFPLKTKLKALSPLIVSVFNTSTIKLL
EFKYDVQSGF Run BLAST on NCBI transcript from alignment at sc0000157:43301..45238 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012920 ID=TCONS_00012920|Name=TCONS_00012920|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000157:43301..45238 (Clytia hemisphaerica)
CAaggtaaattattttctttggaTGTGCCATAGTAGCTCATTTTAGATGA
ATTCTAGAATTGTGAAActttgattaatacttttttatgtttttatatat
tcATGTGTCATCTTGTTGACTGTAATAGTTCATTGTTTgacaatttcaat
ttcttgttCTAATGTTCTCTCTGAAATGCAAAGTAAACattgaagtgaat
acagtcgctctcatttCTCCCAATTCACCGTCTCTGAGAAGTCAGTAGAC
AATAATTCGNCATCTTTCCAGGTCTTCATCAAATCTATGCAGAGACTACC
AATTACAATTTATAATGAGAATGTTCAACAGTTGAGATATGAGGTAGTTG
AAAAAACATATCCTCCTGGTACTGTTATTATTAAGGAAGGTGATAAACCT
TTGGGCATTTTTGTTGTTATCAAAGGTATTTTCAATGTTATTGGAAGTGA
TGGTAAAACTGTTATTCGGCAGTTGAAACGTGGAGATTTCTTTGGTGAAT
TATCTAGTCTTTATGGTAAGCCATGTACATGCACTGTTTCTGTTGATAAT
CAGAGTGAATGTCATTTTGCAATGTTACCACATTCAAATGTGAAAAAGAT
TCTTCTTGATAATGAACCTTCAATAGATGTCAAGTCTTATTTCATCAAAC
AAGGATATCTTGATTCATCAAATCTTTTTCTATCGATCGATATACCAAGA
GCTATATTACAGAGTCGTTTACATGAATGCCCATTGTTTTATGAATGGTC
CAAAGAGGCTGTAATGGAATTGACAAACCAACTATCAAAACAATTCATTG
AGGTTCATCCAACCAATACACTGCTCACATTTGAGAATGAATCAAACAGT
TCTTTGTTTTTGATCTTGGAAGGAACAGTTGAACTGTTGAGAAAGGTTGC
ATTTGCAGAAGTGGAGTGCAGTGGTTCTTGTACTGCTTTTTGTGAGGAAA
ATTTATTGGGTAATACCAACAATATGCTGTATTCTTCTAAAGTGAAACAA
ACATGTCATTGCGTCACACTTCATCAATGGCATTTTGAAGCATTGCTGAA
AAACTATCCTATTGAATGTGCTAAATTTATGGAATGGAAAAAGATCTGGC
AAGTCTTTTTGGAATCGACAGCTGAATTAAACAATGAGCAGTTAGCATAT
TTGCATCCAAGCCATGTGCTCAACCTTATcaaagaacaaaagaattttat
tGATTTACCACGTGTTTTTCTTTACGAAATGGTTCTGAAAATGGATTATA
CAGTTGCTGAAACTAATGAAGTCATTTTTGAGATTGACTCCAGTTACCAG
CATGACCCTTTCACATTCATTGTTTTGAAAGGTGAGCTAGCAGTTGAAGC
ACCATCCAACTCTGACATTATTGTGAAAACAAATGAGACTTTCTACTTGA
ATCCCAAATttccattaaaaacaaaattaaaagcaTTATCACCATTAATT
GTCAGTGTTTTCAATACTTCGACCATTAAATTGTTGGAATTCAAATATGA
TGTGCAATCTGGATTTTGAAATACCTTCCAAATATACCAGGTAAAAGGGA
AGGTCGTTTGGTTTGTTGGTTGTGTATATCAaggtttttcagtttttaaa
caAAGACCATGATGATCCACCAAAATTATCtaaaattcttaaatttttcc
aaCATTCATATAAattgaagataatttttttgtccTATTCTTGATCAATC
AaagttgtttcatttttttgtatcGTAAAAGTTTTAAGAATTATTAGATC
ACCAAAAGCAGCAAAGAGGTCAAATATAAGGGAAATATCATCCTTGAAGT
ACTTTTGGCAACTTTTTTCCAGACCATTAAAATTTCTTCCATATGGTTTT
TTTTAGTCTAATGGTTTATCAATTGTAAAATactgatttaaaaaatattg
tatATAGCAAAGATTATGTAATTTTATGAAAGAAGTAC Coding sequence (CDS) from alignment at sc0000157:43301..45238 >TCONS_00012920 ID=TCONS_00012920|Name=TCONS_00012920|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at sc0000157:43301..45238 (Clytia hemisphaerica)
ATGCAGAGACTACCAATTACAATTTATAATGAGAATGTTCAACAGTTGAG
ATATGAGGTAGTTGAAAAAACATATCCTCCTGGTACTGTTATTATTAAGG
AAGGTGATAAACCTTTGGGCATTTTTGTTGTTATCAAAGGTATTTTCAAT
GTTATTGGAAGTGATGGTAAAACTGTTATTCGGCAGTTGAAACGTGGAGA
TTTCTTTGGTGAATTATCTAGTCTTTATGGTAAGCCATGTACATGCACTG
TTTCTGTTGATAATCAGAGTGAATGTCATTTTGCAATGTTACCACATTCA
AATGTGAAAAAGATTCTTCTTGATAATGAACCTTCAATAGATGTCAAGTC
TTATTTCATCAAACAAGGATATCTTGATTCATCAAATCTTTTTCTATCGA
TCGATATACCAAGAGCTATATTACAGAGTCGTTTACATGAATGCCCATTG
TTTTATGAATGGTCCAAAGAGGCTGTAATGGAATTGACAAACCAACTATC
AAAACAATTCATTGAGGTTCATCCAACCAATACACTGCTCACATTTGAGA
ATGAATCAAACAGTTCTTTGTTTTTGATCTTGGAAGGAACAGTTGAACTG
TTGAGAAAGGTTGCATTTGCAGAAGTGGAGTGCAGTGGTTCTTGTACTGC
TTTTTGTGAGGAAAATTTATTGGGTAATACCAACAATATGCTGTATTCTT
CTAAAGTGAAACAAACATGTCATTGCGTCACACTTCATCAATGGCATTTT
GAAGCATTGCTGAAAAACTATCCTATTGAATGTGCTAAATTTATGGAATG
GAAAAAGATCTGGCAAGTCTTTTTGGAATCGACAGCTGAATTAAACAATG
AGCAGTTAGCATATTTGCATCCAAGCCATGTGCTCAACCTTATcaaagaa
caaaagaattttattGATTTACCACGTGTTTTTCTTTACGAAATGGTTCT
GAAAATGGATTATACAGTTGCTGAAACTAATGAAGTCATTTTTGAGATTG
ACTCCAGTTACCAGCATGACCCTTTCACATTCATTGTTTTGAAAGGTGAG
CTAGCAGTTGAAGCACCATCCAACTCTGACATTATTGTGAAAACAAATGA
GACTTTCTACTTGAATCCCAAATttccattaaaaacaaaattaaaagcaT
TATCACCATTAATTGTCAGTGTTTTCAATACTTCGACCATTAAATTGTTG
GAATTCAAATATGATGTGCAATCTGGATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012920-exon-sc0000157-1491911889:43301..45238 | TCONS_00012920-exon-sc0000157-1491911889:43301..45238 | Clytia hemisphaerica | exon |
| TCONS_00012920-exon-sc0000157-1510915933:43301..45238 | TCONS_00012920-exon-sc0000157-1510915933:43301..45238 | Clytia hemisphaerica | exon |
| TCONS_00012920-exon-sc0000157-1575043694:43301..45238 | TCONS_00012920-exon-sc0000157-1575043694:43301..45238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:43301..45238 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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