TCONS_00012925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012925
Unique NameTCONS_00012925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012925 ID=TCONS_00012925|Name=TCONS_00012925|organism=Clytia hemisphaerica|type=transcript|length=798bp
AAAAAATATTCACATcctgagcatgatgacatttctaaCAGTAAGGTGTA
ATATAAATTGACACATTGCaagaaaacatttatttttttaaattttaaaa
gacctttttttaagaacaaaggaaatttccaGTTATTGCTCACTTTTGGC
TTGATGTGAGACGTcatcaaaagaatattttgtcAGAATTTACCTTATCA
GGCATTTTTCCAGGGGTTTTCTGCTACCGGATAACGGTAGCAGAAACTGA
ATCTTTAATTAAGTTTTGGAACTCaatctttatgaaaaataaaattagct
ATGGAAAAAGGTAAATGAAGGTAAATGAGtgaaaatgtcttcaaataTTT
GACATTATAGCACTTAATTCCGCAAAAAGGCATAATTTTCTTGGGGCTTT
GCCCAATAGACCACACCAGGACTGTCCTGGACCAGTTGGGCTGTTTACAA
AGGCCCCTGTATGCTTTTTCGAGCCTAAGGCACATTCTGAAACTtagttt
tttgattaaaaacggtAGCAGCTCCAAATCCTGGAAATTTGCCTGCTTAA
ATGACAAAGATCTTATGTGCCAAATTCCATCCAAATATGCCAActaaatc
aaaagttaagggggtGTACAAGAAAAGCCCCCCCTCCCCCTAGTTCTGGA
CaacccctaaaagcctagtatgaatagggtttaAGGATATATTTGTATGT
GCATCAcaattttgttgctgttgtttTTAATGGTAGATTTTTAATAGGTT
TTATTTACTTGCAAACAATGTGACTCTAGGCATTATTATTTATAGAAG
Run BLAST on NCBI

transcript from alignment at sc0000157:252116..252913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012925 ID=TCONS_00012925|Name=TCONS_00012925|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0000157:252116..252913 (Clytia hemisphaerica)
CTTCTATAAATAATAATGCCTAGAGTCACATTGTTTGCAAGTAAATAAAA
CCTATTAAAAATCTACCATTAAaaacaacagcaacaaaattgTGATGCAC
ATACAAATATATCCTtaaaccctattcatactaggcttttaggggttGTC
CAGAACTAGGGGGAGGGGGGGCTTTTCTTGTACacccccttaacttttga
tttagTTGGCATATTTGGATGGAATTTGGCACATAAGATCTTTGTCATTT
AAGCAGGCAAATTTCCAGGATTTGGAGCTGCTaccgtttttaatcaaaaa
actaAGTTTCAGAATGTGCCTTAGGCTCGAAAAAGCATACAGGGGCCTTT
GTAAACAGCCCAACTGGTCCAGGACAGTCCTGGTGTGGTCTATTGGGCAA
AGCCCCAAGAAAATTATGCCTTTTTGCGGAATTAAGTGCTATAATGTCAA
AtatttgaagacattttcaCTCATTTACCTTCATTTACCTTTTTCCATag
ctaattttatttttcataaagattGAGTTCCAAAACTTAATTAAAGATTC
AGTTTCTGCTACCGTTATCCGGTAGCAGAAAACCCCTGGAAAAATGCCTG
ATAAGGTAAATTCTgacaaaatattcttttgatgACGTCTCACATCAAGC
CAAAAGTGAGCAATAACtggaaatttcctttgttcttaaaaaaaggtctt
ttaaaatttaaaaaaataaatgttttcttGCAATGTGTCAATTTATATTA
CACCTTACTGttagaaatgtcatcatgctcaggATGTGAATATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007255XLOC_007255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012925-exon-sc0000157-1491911889:252116..252913TCONS_00012925-exon-sc0000157-1491911889:252116..252913Clytia hemisphaericaexon
TCONS_00012925-exon-sc0000157-1510915933:252116..252913TCONS_00012925-exon-sc0000157-1510915933:252116..252913Clytia hemisphaericaexon
TCONS_00012925-exon-sc0000157-1575043694:252116..252913TCONS_00012925-exon-sc0000157-1575043694:252116..252913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:252116..252913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.565405	0.866341	0.684673	1.31772	1.32989	0.658212	0.702453	1.00072	0.569025	0.552267	0.430625	0.60726	0.83616	1.28967	0.690855	0.592116	0.88634	0.766006	0.448209	0	0.694688	1.04113	0.968689	1.10355	0.472419	1.66235	0.947575	0.562912	0.297284	0.873983
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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