TCONS_00012932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012932
Unique NameTCONS_00012932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012932 ID=TCONS_00012932|Name=TCONS_00012932|organism=Clytia hemisphaerica|type=transcript|length=805bp
TCAACTTATTATCAAGACTGACCATCGCACCACCCACTGAGTACATAGCG
TACTACCTGAAATCAAGTCCTTACTATATGTTACATAATTGTTTACATTC
TCTAAGTtaataaaatttattaaaacttAATAGTTAATTTAATGAACTAA
TTTTaaactaatttcttttttatttaaaggTACCTTTCTAGTATAAAGTT
GGTAACCCATAAATTTTGCATTCATTCTCAAAAAAACTATCCAAATTTAT
CATAATATATTTTAAAGTATGTTTATCCCTACTAGAGTGTGAAAAAACTG
TTTTCCTAGAGGGCAGTTGCTTTTAATCTGgtaaaattagctcaaaaaag
gtTCAACCCTTTAACAAGATTATTTGGCTAAAATTGAATCCTTTTGGTTT
CTAGAACTTAAATCTCCTTTTACGTCCATACAGAATGTCCGGGTTGGATT
TCTAATCGTTACAGTGATTGACTTTGTCAATTAATAGAACTCTACCCGGG
TTGAAAATGCTGATGttaacaaaatatattttgtccTCGTTTTATTTGAG
ATATGTAAAATAATtagtttttgatcatttttccaAGATTTAATCAAAAA
GCAATGTCTCCCTCGGATAACCAAAAAAAACCAGGCTAGATAGATAGGGT
TACTGTATTTTATATAAGTtccgtgaaaaaaaaattacggtGTAATTAAA
AACAATCATTACATAATATGAACAACATTTACACGTATAGGTAAAATGGT
AagcattttaaagatatttttcaggCTTTTCCAGGGGAAAAATCGGTCAG
TTTTG
Run BLAST on NCBI

transcript from alignment at sc0000157:413183..413987

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012932 ID=TCONS_00012932|Name=TCONS_00012932|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at sc0000157:413183..413987 (Clytia hemisphaerica)
CAAAACTGACCGATTTTTCCCCTGGAAAAGcctgaaaaatatctttaaaa
tgctTACCATTTTACCTATACGTGTAAATGTTGTTCATATTATGTAATGA
TTGTTTTTAATTACaccgtaatttttttttcacggaACTTATATAAAATA
CAGTAACCCTATCTATCTAGCCTGGTTTTTTTTGGTTATCCGAGGGAGAC
ATTGCTTTTTGATTAAATCTtggaaaaatgatcaaaaactaATTATTTTA
CATATCTCAAATAAAACGAggacaaaatatattttgttaaCATCAGCATT
TTCAACCCGGGTAGAGTTCTATTAATTGACAAAGTCAATCACTGTAACGA
TTAGAAATCCAACCCGGACATTCTGTATGGACGTAAAAGGAGATTTAAGT
TCTAGAAACCAAAAGGATTCAATTTTAGCCAAATAATCTTGTTAAAGGGT
TGAaccttttttgagctaattttacCAGATTAAAAGCAACTGCCCTCTAG
GAAAACAGTTTTTTCACACTCTAGTAGGGATAAACATACTTTAAAATATA
TTATGATAAATTTGGATAGTTTTTTTGAGAATGAATGCAAAATTTATGGG
TTACCAACTTTATACTAGAAAGGTAcctttaaataaaaaagaaattagtt
tAAAATTAGTTCATTAAATTAACTATTaagttttaataaattttattaAC
TTAGAGAATGTAAACAATTATGTAACATATAGTAAGGACTTGATTTCAGG
TAGTACGCTATGTACTCAGTGGGTGGTGCGATGGTCAGTCTTGATAATAA
GTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007261XLOC_007261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012932-exon-sc0000157-1491911889:413183..413987TCONS_00012932-exon-sc0000157-1491911889:413183..413987Clytia hemisphaericaexon
TCONS_00012932-exon-sc0000157-1510915933:413183..413987TCONS_00012932-exon-sc0000157-1510915933:413183..413987Clytia hemisphaericaexon
TCONS_00012932-exon-sc0000157-1575043694:413183..413987TCONS_00012932-exon-sc0000157-1575043694:413183..413987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:413183..413987 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0595264	0.290238	0	0	0.0802747	0	0.229592	0.071647	0.0501618	0.0621334	0.180925	0	0.356302	0.246682	0.236607	0.362737	0.402176	0.274812	0.442945	0.198647	0.287768	0.505307	0.136504	0.310254	0.0639109	0.171117	0.244868	0.17422	0.594627	0.336573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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