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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012973 ID=TCONS_00012973|Name=TCONS_00012973|organism=Clytia hemisphaerica|type=transcript|length=5329bpRun BLAST on NCBI transcript from alignment at sc0000161:221866..248038+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012973 ID=TCONS_00012973|Name=TCONS_00012973|organism=Clytia hemisphaerica|type=transcript|length=26173bp|location=Sequence derived from alignment at sc0000161:221866..248038+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012973 vs. Swiss-Prot (Human)
Match: FBLN1 (Fibulin-1 OS=Homo sapiens GN=FBLN1 PE=1 SV=4) HSP 1 Score: 190.66 bits (483), Expect = 1.267e-49 Identity = 142/362 (39.23%), Postives = 202/362 (55.80%), Query Frame = 1
Query: 2956 DGRKCFDIDDCKTEANDC--GQVCVNLLGSFRCE----CNPGFELETNGKNCSDIDECVRQPDICDADANSVCLNTVGSYSCV----CKTGFRRDENNICSDINECAEGTSGCQ--YQCSNTVGSFTCS-----CPTGTNLNTTDLKTCIDINECL--AKPCDSNADCENVFGSFVCQCKTG--FTGNGKQCEDLDEC-KIPVQIELGITLNCSQICTNNVGSYICSCNPGFTLGTDKHTCVPNPNLCLIDGGNPCDENGECLFDAIKNETSCKCIAGYR--NIDSITCEDINECSTTNGG--CSQTCTNKPGTYECSC-NSGFTLDVDGKTCVDIDECLTNNGGCTPILQLCVNTPGSFRC 3960
DG C D+++C T ++ C G+ C+N +GSFRC+ C G+EL T +C DIDEC + I + + +C NT+GS+ C CK+GF +D C DINEC ++ C + C NT GS+TC C G +LN + C+D++EC A+PC C N GSF C+CKTG F G + C D++EC + P ++ C C N +GSY+CSC+ GF L D +C + N C +PC + EC + C C GY+ ++D +TCEDI+EC+ GG CS C N PG+++CSC +SG+ L +G+ C DIDEC+T C+ I + C N G FRC
Sbjct: 210 DGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYEL-TEDNSCKDIDEC--ESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTR-CVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRL-------CGHKCENTLGSYLCSCSVGFRLSVDGRSC-EDINEC---SSSPCSQ--ECA--NVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCS-INETCFNIQGGFRC 551 HSP 2 Score: 135.961 bits (341), Expect = 2.833e-32 Identity = 118/368 (32.07%), Postives = 160/368 (43.48%), Query Frame = 1
Query: 3007 CGQVCVNLLGSFRCECNPGFELETNGKNCSDIDECVRQPDICDADANSVCLNTVGSYSC----VCKTGFRRDENNICSDINECAEGTSGC--QYQCSNTVGSFTC----SCPTGTNLNTTDLKTCIDINECLA--KPCDSNADCENVFGSFVCQ-----CKTGFTGN--GKQCEDLDECKIPVQIELGITLNCSQICTNNVGSYICSCNPGFTLGTDKHTCVPNPNLCLIDGGNPCDENGECLFDAIKNETSCKCIAGYRNIDSITCEDINECSTTNGG-CSQTCTNKPGTYECSCNSGFTLDVDGKTCVDIDECLTNNGGCTPILQLCVNTPGSFRCENRTWNEWT--------DWGECSLTCGGGV 4026
C Q C + C C G++L ++G +C D++EC+ C + C+NTVGS+ C C TG+ E+N C DI+EC G C + C NT+GSF C C +G + L CIDINECL+ PC C N GS+ CQ C G+ N G +C D+DEC P + C N+ GS+ C C G+ FD I S C D+NEC G C C N G+Y CSC+ GF L VDG++C DI+EC + +P Q C N GS++C R + + D EC+L GG +
Sbjct: 186 CKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGES--CINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDA--LGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAE-----PCGKGHRCVNSPGSFRCECKTGY------------------------------YFDGI----------------SRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSS-----SPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHI 493 HSP 3 Score: 105.145 bits (261), Expect = 1.297e-22 Identity = 64/168 (38.10%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 2947 FEGDGRKCFDIDDC-KTEANDCGQVCVNLLGSFRCECNPGFELETNGKNCSDIDECVRQPDICDADANSVCLNTVGSYSCVCKTGFRRDENN--ICSDINECAEGTSG--CQYQCSNTVGSFTCSCPTGTNLNTTDLKTCIDINECLA--KPCDSNADCENVFGSFVC 3429
F+G R C D+++C + CG C N LGS+ C C+ GF L +G++C DI+EC P + C N GSY C C+ G++ + + C DI+ECA T G C Y+C N GSF CSCP+ + + C DI+EC+ C N C N+ G F C
Sbjct: 390 FDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSSP------CSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRC 551 The following BLAST results are available for this feature:
BLAST of TCONS_00012973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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