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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012983 ID=TCONS_00012983|Name=TCONS_00012983|organism=Clytia hemisphaerica|type=transcript|length=1992bpRun BLAST on NCBI protein sequence of TCONS_00012983-protein >TCONS_00012983-protein ID=TCONS_00012983-protein|Name=TCONS_00012983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp MDQSASVHVWTVVRTQIDNLSEHKNVTDDLGLAPHGRVKLVHSTAITPPGRun BLAST on NCBI transcript from alignment at sc0000161:352616..365298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012983 ID=TCONS_00012983|Name=TCONS_00012983|organism=Clytia hemisphaerica|type=transcript|length=12683bp|location=Sequence derived from alignment at sc0000161:352616..365298+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000161:352616..365298+ >TCONS_00012983 ID=TCONS_00012983|Name=TCONS_00012983|organism=Clytia hemisphaerica|type=CDS|length=8613bp|location=Sequence derived from alignment at sc0000161:352616..365298+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012983 vs. Swiss-Prot (Human)
Match: WDR60 (WD repeat-containing protein 60 OS=Homo sapiens GN=WDR60 PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 3.788e-32 Identity = 97/295 (32.88%), Postives = 153/295 (51.86%), Query Frame = 3
Query: 495 YRVTHFTLFPFFI*KTKSYFSLDISFQLATMDQSASVHVWTVVRTQIDNLSEHKNVTDDLGLAPHGRVKLVHSTAITPPGVSVTSFTHLFSMTSLKVN----EANPNDMYAGTGSGEILHMTRFSNRPTPRLFR-QGEGSN--KVNSIDINPWKMPYMLACYDDGCVRLFHVKTEDALMTWANTTSGASLLHVQWSRSRPSVFFTMDSDSVLYIWNLLESDVAPIHQMKIQRKDKRAVSFTLANDYAAMGKGSPGRPSEMALIF--GDGSVEIHRLTKKLFTMQPDELDAMDSFL 1352
++ F L PF T+ S +SF +A++D+S ++VW VV +++ DLGL P GRVKLVHS A+ G S++ + F T+ +N ++PN GT G I H TR R P+LF+ Q G KVN ID +P+ P LA DG +RL + + L+ W ++T ++ +QWS +RP+VF D S +YIW+LL+SD+ P+ + ++ R V+ AA+G+ S +AL+ GS++I L ++ + DE + + L
Sbjct: 776 HKKQSFVLSPF---STQEEMS-GLSFHIASLDESGVLNVWVVVELPKADIA---GSISDLGLMPGGRVKLVHS-ALIQLGDSLSHKGNEFWGTTQTLNVKFLPSDPNHFIIGTDMGLISHGTRQDLRVAPKLFKPQQHGIRPVKVNVIDFSPFGEPIFLAGCSDGSIRLHQLSSAFPLLQWDSSTDSHAVTGLQWSPTRPAVFLVQDDTSNIYIWDLLQSDLGPVAKQQVS--PNRLVAM------AAVGEPEKAGGSFLALVLARASGSIDIQHLKRRWAAPEVDECNRLRLLL 1054 The following BLAST results are available for this feature:
BLAST of TCONS_00012983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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