TCONS_00012987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012987
Unique NameTCONS_00012987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012987 ID=TCONS_00012987|Name=TCONS_00012987|organism=Clytia hemisphaerica|type=transcript|length=452bp
GATTGAGCAATGAGTCATTTTGTTCGTGTGAtggtttttttgaatttgaa
atcccGATAAAATTTTCACGTCCGACATTAGTAGGGTGTTTCGTTCCTGT
TAAGAGGGACTTGGCTtgggtttttttgttttgtttttttgttaacGGTG
TAATAGAAATATTTGACCTTCAAAGAAGTCTTGTTTTTGGGAAAAGACTT
GAACCAAATACAAGGTTTCACAATCTTGAAGACGATACAAACCCAATTGT
TAACTAAGCCTTCTTAAAATCAGAGAACATCATGAAGTACCAGATAAGAA
AGATGTTCATATTTTTGTTAATCGTGGTGACTGCAACAGTGAGACCAGTc
gctccagtaacaacggctgctccagtaacaactgccgctccagtaacaac
ggctgctccagtaacaactgCCGCTCCAGTAACAACTGCTGCTCCAGTAA
CN
Run BLAST on NCBI

transcript from alignment at sc0000161:376315..381434+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012987 ID=TCONS_00012987|Name=TCONS_00012987|organism=Clytia hemisphaerica|type=transcript|length=5120bp|location=Sequence derived from alignment at sc0000161:376315..381434+ (Clytia hemisphaerica)
GATTGAGCAATGAGTCATTTTGTTCGTGTGAtggtttttttgaatttgaa
atcccGATAAAATTTTCACGTCCGACATTAGTAGGGTGTTTCGTTCCTGT
TAAGAGGGACTTGGCTtgggtttttttgttttgtttttttgttaacGGTG
TAATAGAAATATTTGACCTTCAAAGAAGTCTTGTTTTTGGGAAAAGACTT
GAACCAAATACAAGGTACTTAGTGCTTATTTACTTCTTAATGTTCTGGCA
CTCAGTTTTAATCTTGGTAATATACAATCTCCTTAGACCATCTAAAATGT
TTTCCCGATTCAAACAGGTACCAATTATAAGGTATCAAAATATTAAGTTG
TGcatgaaatttattttaaacttAGGTTTTTAAGTAAATTGGTTCTGGGA
TGACTAAATTAGGGGTGGTCAAAATGTCTGAATGtccgaaaaattatttt
aattgcCATAAATGTCCGAGATTTTAACGCTTACCCCCAACGCTACCACC
GTAAGGCTGGTGACAAGAAGTCGTTTATTGAGGATGATTTCAGCAAAAGG
GTTTGACCGCCTGGAGAAAACTCGCACCGTTTTCTATGCTTGTGTATTTT
TTGGTTTACTATCCAGTACTATCTCGAGAATCctatttttcataactttt
gaaaacttaaaaatctaatttacaaaaggatttttttctcgttttttttg
GCTTAAGAGAGGCTAACTAACTTTCCTAAATTTCAAGCTCATTATGATTA
TGGTAAAGGTTTTAGAATTTATGATTCTATCAGCTATATTTTGGAGTCAT
TTAACAATTTTAAAtctaaagattttcaaagtgaagaagGTTTAATTCCT
CGCTTGCCTGGCACCAAGattgcttaaaatattcttacatacAGTTAAAT
TTTTACTTAAGACTTTAAATGGAagtaaagttttattttaagacTTAAAG
TGACATCAAATCAACGTAtttcctaccatttgcttatactgtattaaaaa
aaaagaaaaaaagataagcgtaaaattattaaaatattctttattttgCA
ATTACGCTTAAAATGATAATAATTCTGTCTGTATTTTCTTTCTGGTTTAG
GTTTCACAATCTTGAAGACGATACAAACCCAATTGTTAACTAAGCCTTCT
TAAAATCAGGTATGATATTTTCACGGTTCTTTATTATCCAATAAATATTC
TATGGTGTTCTAGTCTAGCATAGGCCCGGCGGGAGCGAGGAGACTGGGAA
GACTGGGGAGACTcaagcctccccacttttgcgCAATTGAGAttcttttc
tcaaattcctagcgaatctcattttgagccttcagttACGGTTGTTCCAC
CGGGTTTGTAGCATGCTAAGCAAATAATTCAGACATGAATTAAGCAAATC
GAAGGAGTGAATCCCATGTTATTTTTGTAGTAACACCTATGGTACACGAA
TGTATCAGGGGCTctttagactacacaatattcACCAATATGATTTGTGG
ACCATAATTGACAgaaacaaaattataaaaaaaaggattttctttcTGTA
GACAATCCTTTATTGTTGAAACGTTGCCAAGAGCTGATAATAGAATGCGT
GCCCAGTTGGCGTGAGTTTATAAAGATTCCCATTTATTTTTAATGCCAAT
ATATTTTACTGGGTCTGGCACTcagttatttttgttttttatttatgacG
GTTTAAAAATCGCTTTAAATTTACCCAAATGGCGATAGTCTTACCCAGTT
CGCTTGagaaaattcaaatgaaaatatcacACTCAACAGTGaagtaaaat
gaaaaatagaaaaaaaaaatattgcgaAAATNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNggtctttttggatgaaatttggcacacaa
gatccttgtgacttaaggtaaattttgacaaaaaaattttttgatgaagt
CACTCATcgtgcccaaagtgagcaaaaaccgaaaatttcctttgttctta
taaatagctattgcaTTCTAACagaggctttagaaaaaagttgcctgagt
ttgaaatgcttattttatcctaaatattcaataaattacggtttaaacga
tatatttgacaatgaaaataaatttgtattggaaaagtgtcaatNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaaaatttcacggcaaa
agctctattatttcaggagctattagcaatagtttgacctcgaaacagaa
agagcccccccctagtacgaatagggttaatgtTTAATCGAATGTGTCAA
TCAACCTACTATAAAATAAGAGTGCCTTTGCCGGGTTTTCTcatttaaat
tcgttttattattgtattaattTCATGTTCTGCATTTTCAGAGAACATCA
TGAAGTACCAGATAAGAAAGATGTTCATATTTTTGTTAATCGTGGTGACT
GCAACAGTGAGACCAGTcgctccagtaacaacggctgctccagtaacaac
tgccgctccagtaacaacggctgctccagtaacaactgCCGCTCCAGTAA
CAACTGCTGCTCCAGTAACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007280XLOC_007280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012987-exon-sc0000161-1491911889:376315..376528TCONS_00012987-exon-sc0000161-1491911889:376315..376528Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1510915933:376315..376528TCONS_00012987-exon-sc0000161-1510915933:376315..376528Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1575043694:376315..376528TCONS_00012987-exon-sc0000161-1575043694:376315..376528Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1491911889:377415..377473TCONS_00012987-exon-sc0000161-1491911889:377415..377473Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1510915933:377415..377473TCONS_00012987-exon-sc0000161-1510915933:377415..377473Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1575043694:377415..377473TCONS_00012987-exon-sc0000161-1575043694:377415..377473Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1491911889:381256..381434TCONS_00012987-exon-sc0000161-1491911889:381256..381434Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1510915933:381256..381434TCONS_00012987-exon-sc0000161-1510915933:381256..381434Clytia hemisphaericaexon
TCONS_00012987-exon-sc0000161-1575043694:381256..381434TCONS_00012987-exon-sc0000161-1575043694:381256..381434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:376315..381434 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.4104	15.7206	6.54925	2.5333	31.8286	17.8604	28.4965	30.0308	8.78329	19.8989	15.2876	12.1426	451.956	486.785	11.0622	19.4053	24.2493	19.1765	1033.51	1529.16	8.09198	8.3435	8.38791	11.1334	32.3538	28.5042	6.42049	7.07341	8.62324	8.48978
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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