TCONS_00012991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012991
Unique NameTCONS_00012991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1106

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012991 ID=TCONS_00012991|Name=TCONS_00012991|organism=Clytia hemisphaerica|type=transcript|length=1106bp
cctcttccgagacggaggctaattaccAAGAATTTACCATCGTGTCGTAA
GAGGGGAAAGTGAAGAATATCTGAACAAGAAAAGGAAGAAgtagaaaaaa
tattgattaactttaaaacgTGGGTTTAAAGAAAGGAACTCAAAAATACA
AATCAACACTGAAAATAGAAGAACGgatgaaaggaaagaaaagaaaaaag
ggcTAGAAGAAAAGAGATACAGTAAAATATTGTGTGAAAAACAGTCCGTG
ACGTGAAGTGAAACAGttatgaaaaaagtaaaaaagtggaTGAGAGCAAA
AGTATGATAAATTATGAATGGCTAGTTTCTTTAGGAATGACATTGACAGT
AAACTACACTTTGAAATATATACCAACTGCATCAATTAGGTTTTCTTGCT
TCACAGAAATTGGTTTCTTTGGAAAAGCTTTCAGTGAACCGGTGAAAATG
TTAGTGGGATTGTGAGTATAATTAAGCATAATTAACATAATTACTACTCC
AAGGTGTCTTATAAACAGGGGATTAATTGCTGGAGTATTTACAGTTGTAC
CTCTGACCTCTAACCAAAATGACATAAATATAAACTAAAACCAGACTATT
TGGAGCAAAAGGAACGCAATCCAACGTTCAATCCATTGGGAGTATTCCGC
TTCATCCAAGCTTAACATGATGTTGAACATAAATTTCATTTAACGCAATT
TTTCCATGTGCTTATCCAACCATTTCCTCCATTTCCAAAATTATCTTACA
TGAATATTAAACGCGTCAAGGCTCGGAGGAGTATCGTCCAATTTCTAATA
TTCTAACGAAGATCGCTCGTAGATCTGCAATCTATCCAATAGGTTTTTCC
TCGAGTGTTCGTGATACCTTTTGTTTATACATTTGCATATTTTCATTCTT
CTCATGTTGGCAAGATATACTTGAGATATTCCTTCTCCAAAACACCTTCG
TCAAATCTTGTTAAGTCAACCTGAAGGATAGAAGAAACATCACAATCAGC
TAATTGTATAAAATTTACATAAAAGGAATGCCTTCCTAGCGCATTTTTGA
GCAGCTGCATTTTCTGGCAAAAACATTGCTTTGAATAATGTCCTCTACGC
CTCTAA
Run BLAST on NCBI

transcript from alignment at sc0000161:456792..457950+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012991 ID=TCONS_00012991|Name=TCONS_00012991|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at sc0000161:456792..457950+ (Clytia hemisphaerica)
cctcttccgagacggaggctaattaccAAGAATTTACCATCGTGTCGTAA
GAGGGGAAAGTGAAGAATATCTGAACAAGAAAAGGAAGAAgtagaaaaaa
tattgattaactttaaaacgTGGGTTTAAAGAAAGGAACTCAAAAATACA
AATCAACACTGAAAATAGAAGAACGgatgaaaggaaagaaaagaaaaaag
ggcTAGAAGAAAAGAGATACAGTAAAATATTGTGTGAAAAACAGTCCGTG
ACGTGAAGTGAAACAGttatgaaaaaagtaaaaaagtggaTGAGAGCAAA
AGTATGATAAATTATGAATGGCTAGTTTCTTTAGGAATGACATTGACAGT
AAACTACACTTTGAAATATATACCAACTGCATCAATTAGGTTTTCTTGCT
TCACAGAAATTGGTTTCTTTGGAAAAGCTTTCAGTGAACCGGTGAAAATG
TTAGTGGGATTGTGAGTATAATTAAGCATAATTAACATAATTAGTACTCC
AAGGTGTCTTATAAACGGNAGTGGGTAAGCATAATAAACATAATTACTAC
TCCAAGGTGTCTTATAAACAGGGGATTAATTGCTGGAGTATTTACAGTTG
TACCTCTGACCTCTAACCAAAATGACATAAATATAAACTAAAACCAGACT
ATTTGGAGCAAAAGGAACGCAATCCAACGTTCAATCCATTGGGAGTATTC
CGCTTCATCCAAGCTTAACATGATGTTGAACATAAATTTCATTTAACGCA
ATTTTTCCATGTGCTTATCCAACCATTTCCTCCATTTCCAAAATTATCTT
ACATGAATATTAAACGCGTCAAGGCTCGGAGGAGTATCGTCCAATTTCTA
ATATTCTAACGAAGATCGCTCGTAGATCTGCAATCTATCCAATAGGTTTT
TCCTCGAGTGTTCGTGATACCTTTTGTTTATACATTTGCATATTTTCATT
CTTCTCATGTTGGCAAGATATACTTGAGATATTCCTTCTCCAAAACACCT
TCGTCAAATCTTGTTAAGTCAACCTGAAGGATAGAAGAAACATCACAATC
AGCTAATTGTATAAAATTTACATAAAAGGAATGCCTTCCTAGCGCATTTT
TGAGCAGCTGCATTTTCTGGCAAAAACATTGCTTTGAATAATGTCCTCTA
CGCCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007282XLOC_007282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012991-exon-sc0000161-1491911889:456792..457277TCONS_00012991-exon-sc0000161-1491911889:456792..457277Clytia hemisphaericaexon
TCONS_00012991-exon-sc0000161-1510915933:456792..457277TCONS_00012991-exon-sc0000161-1510915933:456792..457277Clytia hemisphaericaexon
TCONS_00012991-exon-sc0000161-1575043694:456792..457277TCONS_00012991-exon-sc0000161-1575043694:456792..457277Clytia hemisphaericaexon
TCONS_00012991-exon-sc0000161-1491911889:457331..457950TCONS_00012991-exon-sc0000161-1491911889:457331..457950Clytia hemisphaericaexon
TCONS_00012991-exon-sc0000161-1510915933:457331..457950TCONS_00012991-exon-sc0000161-1510915933:457331..457950Clytia hemisphaericaexon
TCONS_00012991-exon-sc0000161-1575043694:457331..457950TCONS_00012991-exon-sc0000161-1575043694:457331..457950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:456792..457950 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0764575	0.0693907	0	0.193524	0.196133	0.436755	0.185907	0.331874	0.0844472	0	0.0548868	0.111637	0.178875	0.130118	0.354905	0.0453385	0.464845	0.605686	0.156632	0.339804	0.530857	0.224957	0.331312	0	0.103056	0.417432	0.316278	0	0.0729714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top