|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012993 ID=TCONS_00012993|Name=TCONS_00012993|organism=Clytia hemisphaerica|type=transcript|length=2995bp
TTTGAATATACAGGGGTTTTCCGGCAATGAACGTAAACTAGTAAGAAAGT
TCGTGAAAAAATTCCCCGTTCCTTTGATTCGTCCATAAGGTActttcatt
ttaaagaaaaacggTAATAAATACTGTTCTCCAAAATAGTTTAAAAGTAG
TATGGCATCAGTGATTGAAAAGAGAGGAGTGTGCAGAGTATCAGAGTATG
TTTATGTTGATCTGGCTTGGAAAAGATTATTTGCAAAAAAGCTAGGGCTG
TATATCTAAAACAATGAGGACTAAACAAGGGTTGAAAGTGAATATTGACA
ACAAAGGATACAAATACAAGCAGCTTGTCGAACAAGAAGACAATGGACAC
AATGAAGACGCTCAAAATATTGTTGAACAAAACTCGACGGAGGGAAATGA
TCAAAATGAGAAGCTTGAACATCTAAACAAACTCAGCGTTCATTCAATGG
AAGCGTTATCGGAACTGTCAATCTATTTAAATGAGCTGACGACAGGAGCA
AATAATATCATTGATGTGACGGTCACTTTGGCGTTGTTCGAAGCTTTCCA
TCGTCCAGAGTTTAAAGATTATACGGAAGAGGACAAAAGCCTTCATCAAC
TTATCGAGTCGTTGGCTTGGATTGAACCTGAGCACTTGGGAATCGAATTT
GATTTGAAGGTTAGTTTTTCATTGTATTCACACTCAATTGACAcctgttt
tatattttcttgaagGAGTTTTAGTGATATCCATGTAATAAAGATTATCT
ACGATTTAAATCTAATCTCGTAACATCCACTCTGCGCACGACCACGACGC
TCTGCTCTAAAGCAAAGGGACTCGATAATGTGACGTGTCTCTAGCGGAAC
AATGGCCTTTAGATCACAGAAGTGCCAGAGCAGAGTTATCAGAATCTGTT
CAGAGAGAACTACTAAAGTTAATTGTTAATTGTTGTCACAAGTGTACAAG
TCTATCAATAAGTTCGAATAAATTTGGCTCCATTTGACTTCGGTAAacca
caaaacaaaacatcatcCCCATCCAAACAACCTTTCATTACCTTTTTAGG
ACGATAAGATTCTTTCCAACTTCTCACACGCTGTTTACTGTGTTGCTATG
ATGACAACAAGAGACGATCCATTTCAAATGATCAAAGATATGGTGGACTG
TGTTAAACATGTCGGACAAGCCGCAAAAGATGAAGTTCCAGCAGATAAAC
TGGTTCCCATGGTAACCTTTGTTCTGTTAAAAAGCAACCCTCAAAAGTTG
TATTCCCACTTGAAGCATATATCAGCGTTTTTCGAGTTGAACATGCAGAC
ACACGGAAAACAGGACGATCACCGTATCAAATACGCCATCCCTTCCTTCT
ATATGAATGAAATGGGGTATTGTTTTATCACCATGCAGGCCGCCGTGACT
GATATTAAATCAATGATTGTTTGCGAAGACACAAAAAAGATCATGGACGA
ACGGAAAGAAATCTCACAATATTACATCCAAACTGAGAATTTGGAAGCAT
CATTTTCGGATAATTACAAAGAGAGGATGAATGAATACTTCAattatttg
aaagaaatattAAACGAATGCATTGCTATGCGTATTAACATCCGTGACGC
ACACAGGGAAGATATGGAAGCAATTGCCAAACGACTAGATGACAACAAGC
TGCATGCAAATATTGCAAAGACGGTTGGACTTTGTTGCTCCATCGGAGGT
GGTATCGTCGGGATTGTTGGTTTTGGCTTGATGTTCACAACGTTTGGCGC
ATCCGCCATTATGATTCCCGTTGGGGCGAGCATTGGCGGAAGTGGTGGAT
TGGCGGCCAGCATCGCGACATTTGCTGAGTACGGCATAGCAAGATCAAAa
accaatcaaatcaagaaGAAACGTGAGGAATACGAGAAGAAAGTTATAGA
GCTTTTGTTATGCATCCAAAACATTGGAAATATGCTCGAAGCATGGGGAA
TACGGCACCAACATGTTCTTGGTACAGCTGGCAGAACATTACTTCTCTTA
ACCGACGTTGTTGTTAAACTAGCACGTCTTGGAGTCGCAGCTGAAAATAT
TGGAGATGTAGCTGCTAACGTGTTTCGCCTTGCGGGCGCCGCTGGCCGCG
GATTGGCTATCGCAGGAGTGGTAATCAACATCGTCTTACTCCCAATAGAC
ATGGTCTTTCTCGGAATAAGTATCAAAAACATTATCCAGAAATCTCAACA
AGCGAAAGCAATACGTGACTGGCTTAACCAAAATTTACCGGACGAAAATG
AAATCGACGAATTTGTGACGAAATTACAAGACTCTGTTTTGGATTTCAGC
AGTGACGTACGTGGACAAAAAAGTAAAGAGACTCTCGAGCAGCGACAAGA
AGATCTGAAAACCGCTTtgaatgaaatcaaagaaatGGTTGAAAAGAAAT
TAGCAGCTTAGGAAAAGCAACgctggattttttaacttttgaactGTGTA
TATCGTAGCCGTGGTGAAGTGTTTTGTGCCGGACAGAATATGGACTAACA
TATGAAATCACCCGCTTGAAGCCAAAATATGATACcagattttaaaataa
aaattggctAGTAGCTGAAACTTGGAATTTAAACTATTTATAGTGAAAGA
gactcgggaaatttcaaagaATCCAAAAAGCAACCACTTGAAATACCTAT
TTCAGACAGGCTCTAATGTATTCAAGATGTTTTTAAATTCCTGCACATAG
CAAAAAACATTATGTCACTCGAATAAGAATACACAGTTCACTCTCTCAAC
TCGATCTAGATCAATTCGAATTCGAGAAAGATAAGCATTTAACACTACTC
TCCAAATGAGTAAGCCAATACTATTTTGTTCGATTAACAGAGGTTCGAAa
aaagaggttcgaattagagagagagagttaACTGTATGCTTAACAAATAG
AAAAATACAATAGCGAAAcgaaatttaaattcaaatttaaaaaaaatgtc
gaCATATCCTTCCTATACTCCCACCGTTTCTACTTATCATTATTT Run BLAST on NCBI transcript from alignment at sc0000161:483364..489067+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012993 ID=TCONS_00012993|Name=TCONS_00012993|organism=Clytia hemisphaerica|type=transcript|length=5704bp|location=Sequence derived from alignment at sc0000161:483364..489067+ (Clytia hemisphaerica)
TTTGAATATACAGGGGTTTTCCGGCAATGAACGTAAACTAGTAAGAAAGT
TCGTGAAAAAATTCCCCGTTCCTTTGATTCGTCCATAAGGTActttcatt
ttaaagaaaaacggTAATAAATACTGTTCTCCAAAATAGTTTAAAAGTAG
TATGGCATCAGTGATTGAAAAGAGAGGAGTGTGCAGAGTATCAGAGTATG
TTTATGTTGATCTGGCTTGGAAAAGATTATTTGCAAAAAAGCTAGGGCTG
TATATCTAAAACAATGAGGACTAAACAAGGGTTGAAAGTGAATATTGACA
ACAAAGGATACAAATACAAGCAGCTTGTCGAACAAGAAGACAATGGACAC
AATGAAGACGCTCAAAATATTGTTGAACAAAACTCGACGGAGGGAAATGA
TCAAAATGAGAAGCTTGAACATCTAAACAAACTCAGCGTTCATTCAATGG
TACGTAAACGTATTTTAATTAAAACCAAAAGAtatttggctgagcctcaa
tAGCTTTgatttttcacgattttttatgagaaacacatataccagtggat
accttttaaaacctacaacaaaaaaAGATACCCCCTATATCCTTATAGAG
AAAACAGTAAGGattgaaactttttctggtCTAGGTCTAGTAGTCAAGGC
TACCTTTGAATTTCTTCCGTGGGTAtggttttttgtaaaagctgctaaga
aaatttttattgcttcgtgaaaaaatgcaattttagctatttaccccctt
aaaacctacaaaatggttttcttgaataactttttataaaatagcctttt
ggtctcaaattttgaacagtgattcactgaaGTTACTAAGTTACTAACTA
CAATTACATCATTCGtacctaaaaatcaaaaatcaaattacaccttaaaa
cctacactattacaccttaaaatCTACAAACATTGACCCCTTGCTCAAAA
CTTACTGAGactgtgaaattgcaattcagatgctgaaccgtgattcaatt
gatcaaatacttgctagaaatccattcccaaaacaatatttgtattttcA
GGATTTAATGCCCATAATGTAATTGCGCctgttttttgtcaaaaaacgaC
TTTCAagggtcaaaacttttatttaattcatttttgacctatgttactaa
tgtttttctaaatctccatgaAATtcgtgacattttggtatgcaatatga
ccatgttttgagaaagtcgattttcagattttattggccACTACCATAAA
TGAGAACTTTGAGGGTCTTATGATTTCTTTGGGATGTAACCAtggagaag
aaaatgattttttcgtacctaccataagtataggtacctAAAACAGGTAC
CTTAGATTCATTTGTGTAATCTCCGAAAAAAGGTccgaaaaagttgattt
tttgaaggaatttttgaaggaattttacgacactttgcgataatcaaaat
tcttgaaattaggtATCTTATGAAAGTACCTATATTAGAGATTGTATTAT
acaatattaaattaagtttgatggttaagagagcccaaaacccaattttg
tggttttaaggggtatctaCTGGTAGTCTCTTAATCAAAATAAGACTATG
CTCACACTATGTCGAATAACTTTCCGGGCATTGGGAATTTTTATATTTGA
GGCCATAGCAGTTTATTGGAACATGCTGTAGTGTGCAACCTAAGTAATGA
AATTTGTACCCATACAGGAAGCGTTATCGGAACTGTCAATCTATTTAAAT
GAGCTGACGACAGGAGCAAATAATATCATTGATGTGACGGTCACTTTGGC
GTTGTTCGAAGCTTTCCATCGTCCAGAGTTTAAAGATTATACGGAAGAGG
ACAAAAGCCTTCATCAACTTATCGAGTCGTTGGCTTGGATTGAACCTGAG
CACTTGGGAATCGAATTTGATTTGAAGGTTAGTTTTTCATTGTATTCACA
CTCAATTGACAcctgttttatattttcttgaagGAGTTTTAGTGATATCC
ATGTAATAAAGATTATCTACGATTTAAATCTAATCTCGTAACATCCACTC
TGCGCACGACCACGACGCTCTGCTCTAAAGCAAAGGGACTCGATAATGTG
ACGTGTCTCTAGCGGAACAATGGCCTTTAGATCACAGAAGTGCCAGAGCA
GAGTTATCAGAATCTGTTCAGAGAGAACTACTAAAGTTAATTGTTAATTG
TTGTCACAAGTGTACAAGTCTATCAATAAGTTCGAATAAATTTGGCTCCA
TTTGACTTCGGTAAaccacaaaacaaaacatcatcCCCATCCAAACAACC
TTTCATTACCTTTTTAGGACGATAAGATTCTTTCCAACTTCTCACACGCT
GTTTACTGTGTTGCTATGATGACAACAAGAGACGATCCATTTCAAATGAT
CAAAGATATGGTGGACTGTGTTAAACATGTCGGACAAGCCGCAAAAGATG
AAGTTCCAGCAGATAAACTGGTTCCCATGGTAACCTTTGTTCTGTTAAAA
GTAAGCATTTCAATATACTTTCACGAGATAACTTAAGGTCCTTCTTTGCA
TAGTACCGCCACCTTTTTGATAGAGGGGACGAGtagtttaatttaaaaaa
atgacgtATATGATTTGGGAGGGGTGTGGCTGTTTCTTTTCTTATGGGGG
AGATAGGACGTGAAAGAGGTGATTTTATAAGCGGCATTTATTAGAGGACC
GAGGAGACCTAATTACATGCTTTTGGTTGCAGTATGTTCTATTGTTAAAT
TGCGGTAAAAGCTTCGGGTGGACTTAGGTTATCACTGTGGCAAATCCTTT
TTTCGATTTGTACCGAGTGAAAAGTGCACGATAACAATAAGTAATCTGTA
TTCATTCAGTCAATGGCATTCTAACAGTCTTCAATTTATTTTACATTTAC
ATTGGTTTTCTCTAGAGCAACCCTCAAAAGTTGTATTCCCACTTGAAGCA
TATATCAGCGTTTTTCGAGTTGAACATGCAGACACACGGAAAACAGGACG
ATCACCGTATCAAATACGCCATCCCTTCCTTCTATATGAATGAAATGGGG
TATTGTTTTATCACCATGCAGGCCGCCGTGACTGATATTAAATCAATGAT
TGTTTGCGAAGACACAAAAAAGATCATGGACGAACGGAAAGAAATCTCAC
AATATTACATCCAAACTGAGGTATCTATATCATAGCACCTTTGCCTCtct
ttaatttgattttcaggTGGCTAGAACTTTTCTTCGAATCAAAGAAATTC
GAACTATAAAGAGTATttagttgtttgtttgttttagttCGAGTTACAGT
AAGATCCGAATAGAGGTTCAAATTAAACAGAATTGACTATACTTATATTA
AATGACAGACAGATCTTCCCCAACATATGTATTTTCATACGAGATTTTTA
GAGTTCGGCTGTGCTTCTGCATCTCAATTGGACAGACCAGACTTAAAGAA
ACAAGTTTCCAGgctaaaatttatgttttttctcCATTAACGTATGAAAT
TCCATATCATTGGAAGCATTTTTTCATACTGATTCAGAAATGAAATCTCG
CAATCCATTGAAATTTACTAGGAAAGgttattgaaaaaataacggaccaG
ACTATAGGAGTTAATTTCTATGAGATCCAATAACTTGAAACCAATTCCAC
TTTCTTAGAATTTGGAAGCATCATTTTCGGATAATTACAAAGAGAGGATG
AATGAATACTTCAattatttgaaagaaatattAAACGAATGCATTGCTAT
GCGTATTAACATCCGTGACGCACACAGGGAAGATATGGAAGCAATTGCCA
AACGACTAGATGACAACAAGCTGCATGCAAATATTGCAAAGACGGTTGGA
CTTTGTTGCTCCATCGGAGGTAAATGAATTTAACATTCTATTCTCAAAGT
TTCCAAGTTCAAGGGCCTTATTCCAGGGATCTATAAAGTATGACTCGGAA
CTTTTAGCATAAAAACTGGCATGAGAAACTACGTACATTTTTGCGGAACC
AAAAATCTCAGCATCTCCGACAACTATCGAGGATGCAGTATAATTTCTTA
CTGACAAAATATCATTTCGAAACAACGAATAAtctaaatttatgaaaatt
gccATCTCCAATCAAACAGGACTAACTAGACCGAGCATTCGAGAGTTCTA
TTAGTAAAGAGATATTCATAACAAATCTAACATTCTACTCACAAACTAGC
GCATTCTgtcttattcaatttttacaGGTGGTATCGTCGGGATTGTTGGT
TTTGGCTTGATGTTCACAACGTTTGGCGCATCCGCCATTATGATTCCCGT
TGGGGCGAGCATTGGCGGAAGTGGTGGATTGGCGGCCAGCATCGCGACAT
TTGCTGAGTACGGCATAGCAAGGTAACTGACTCTCTATTAAATTAAAAAG
CAGTTTTAACTGTCTTTTTTATTCAAACGATTCAACTCAAATGATCTTTC
TACATTCAACAAACTTCTAAAATACACACTTTATAGTGAAATATAAAAGT
GACAACTCTAGACTTGTTGGCTTTCGACAATCTCCTTACTTTCACAATTC
AGATCAAAaaccaatcaaatcaagaaGAAACGTGAGGAATACGAGAAGAA
AGTTATAGAGCTTTTGTTATGCATCCAAAACATTGGAAATATGCTCGAAG
CATGGGGAATACGGCACCAACATGTTCTTGGTACAGCTGGCAGAACATTA
CTTCTCTTAACCGACGTTGTTGTTAAACTAGCACGTCTTGGAGTCGCAGC
TGAAAATATTGGAGATGTAGCTGCTAACGTGTTTCGCCTTGCGGGCGCCG
CTGGCCGCGGATTGGCTATCGCAGGAGTGGTAATCAACATCGTCTTACTC
CCAATAGACATGGTCTTTCTCGGAATAAGTATCAAAAACATTATCCAGAA
ATCTCAACAAGCGAAAGCAATACGTGACTGGCTTAACCAAAATTTACCGG
ACGAAAATGAAATCGACGAATTTGTGACGAAATTACAAGACTCTGTTTTG
GATTTCAGCAGTGACGTACGTGGACAAAAAAGTAAAGAGACTCTCGAGCA
GCGACAAGAAGATCTGAAAACCGCTTtgaatgaaatcaaagaaatGGTTG
AAAAGAAATTAGCAGCTTAGGAAAAGCAACgctggattttttaacttttg
aactGTGTATATCGTAGCCGTGGTGAAGTGTTTTGTGCCGGACAGAATAT
GGACTAACATATGAAATCACCCGCTTGAAGCCAAAATATGATACcagatt
ttaaaataaaaattggctAGTAGCTGAAACTTGGAATTTAAACTATTTAT
AGTGAAAGAgactcgggaaatttcaaagaATCCAAAAAGCAACCACTTGA
AATACCTATTTCAGACAGGCTCTAATGTATTCAAGATGTTTTTAAATTCC
TGCACATAGCAAAAAACATTATGTCACTCGAATAAGAATACACAGTTCAC
TCTCTCAACTCGATCTAGATCAATTCGAATTCGAGAAAGATAAGCATTTA
ACACTACTCTCCAAATGAGTAAGCCAATACTATTTTGTTCGATTAACAGA
GGTTCGAAaaaagaggttcgaattagagagagagagttaACTGTATGCTT
AACAAATAGAAAAATACAATAGCGAAAcgaaatttaaattcaaatttaaa
aaaaatgtcgaCATATCCTTCCTATACTCCCACCGTTTCTACTTATCATT
ATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012993-exon-sc0000161-1491911889:483364..483812 | TCONS_00012993-exon-sc0000161-1491911889:483364..483812 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:483364..483812 | TCONS_00012993-exon-sc0000161-1510915933:483364..483812 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:483364..483812 | TCONS_00012993-exon-sc0000161-1575043694:483364..483812 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1491911889:485081..485863 | TCONS_00012993-exon-sc0000161-1491911889:485081..485863 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:485081..485863 | TCONS_00012993-exon-sc0000161-1510915933:485081..485863 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:485081..485863 | TCONS_00012993-exon-sc0000161-1575043694:485081..485863 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1491911889:486279..486533 | TCONS_00012993-exon-sc0000161-1491911889:486279..486533 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:486279..486533 | TCONS_00012993-exon-sc0000161-1510915933:486279..486533 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:486279..486533 | TCONS_00012993-exon-sc0000161-1575043694:486279..486533 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1491911889:487022..487232 | TCONS_00012993-exon-sc0000161-1491911889:487022..487232 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:487022..487232 | TCONS_00012993-exon-sc0000161-1510915933:487022..487232 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:487022..487232 | TCONS_00012993-exon-sc0000161-1575043694:487022..487232 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1491911889:487591..487735 | TCONS_00012993-exon-sc0000161-1491911889:487591..487735 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:487591..487735 | TCONS_00012993-exon-sc0000161-1510915933:487591..487735 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:487591..487735 | TCONS_00012993-exon-sc0000161-1575043694:487591..487735 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1491911889:487916..489067 | TCONS_00012993-exon-sc0000161-1491911889:487916..489067 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1510915933:487916..489067 | TCONS_00012993-exon-sc0000161-1510915933:487916..489067 | Clytia hemisphaerica | exon |
| TCONS_00012993-exon-sc0000161-1575043694:487916..489067 | TCONS_00012993-exon-sc0000161-1575043694:487916..489067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:483364..489067 + |
Blast
The following BLAST results are available for this feature:
|
