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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012997 ID=TCONS_00012997|Name=TCONS_00012997|organism=Clytia hemisphaerica|type=transcript|length=419bp
CGTGATTTCGAAAACCCATAACAAATAATGCATTGCGCGAAGTTTAGTTG
CCCTTTCTCTTACGTGGATCTGATTCAGGAGTGTACCTGATTTGATCTAC
TGAAGATCACCAAATCCAAATAAACTTTGACATTTTCTGGACTAGTCGAC
TAATTACAAGATGGGGGCATTTCAATCATTATTCAAGAACCTTTTTGGAA
agaaagaaatgagaattttaatgGTTGGGTTAGATGCTGCTGGTAAAACC
ACCATTTTATATAAACTGAAATTGGGAGAAATCGTAACAACTATTCCAAC
TATTGGTTTCAACGTCGAGACTGTCGAATACAAAAACATCAGTTTCACTG
TATGGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACATTAC
TTTCAAAATACACAAGGTA Run BLAST on NCBI transcript from alignment at sc0000161:28590..37468- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012997 ID=TCONS_00012997|Name=TCONS_00012997|organism=Clytia hemisphaerica|type=transcript|length=8879bp|location=Sequence derived from alignment at sc0000161:28590..37468- (Clytia hemisphaerica)
CGTGATTTCGAAAACCCATAACAAATAATGCATTGCGCGAAGTTTAGTTG
CCCTTTCTCTTACGTGGATCTGATTCAGGAGTGTACCTGATTTGATCTAC
TGAAGATCACCAAATCCAAATAAACTTTGACATTTTCTGGACTAGTCGAC
TAATTACAAGATGGGGGCATTTCAATCATTATTCAAGAACCTTTTTGGAA
AGAAAGAAATGAGAATTTTAATGGTTGGGTTAGATGCTGCTGGTAAAACC
ACCATTTTATATAAACTGAAATTGGGAGAAATCGTAACAACTATTCCAAC
TATTGGTAAGGATTAACCCTTGTATCATTCTTTGTTAATTTGACTATTCA
GTATCCAATGAAACTGGTATAGATGCTCAGAATTGATCATAATGACCTGT
TTTAAAGGTTTAAATTAAATATCATGGATATCAATTTTATGAAGGTGTGG
TATGGATTTTGTAATATTGTTGATATAGAAGGTGTTGTGTAGTACTTCCA
AGTCAACCATGTGGCTGTCCCATGCCCAAACGGTTGGCAAACGATATCAT
CCACCAGGATGCATCCTCTCTTATTTTCTACTTTCCTATCATCTATCCTG
ATTTGGGCCATTCCAGAATTTGTCTGTAACAGCGGGGCGGACAACACAGG
ATTTCCGAGGGCAAAAGTTTTCACCAACATTCGAAATTTCCAAGGCGGGA
GAAGAAAATGTATGAATTTCCTAGGCAATTGATTAAAAAAGGCAAAAAAG
AGTGGAATTTCCGATGAAAAAATTATTTCTGAGGCTAGATATAATTAAAA
AATGCATGTCGTCCGACGGGGGTAACAAAAATTTTCTGGAATTGGCCCTT
TTCTGACTTCCTCTAGTGTTTCTAACTGTTTTCTAAGTATTTTTCTGAAA
TTTGCCCGTACCGGTGAAATAGGTCTCCGACCCTGGCTCATCACCAAATG
CAAGCAACCTTGGTTACAAACCCAATACCTAACCGCTTACGTCATCGAGA
CACGGTAGAAAGCTGTCATTCACAAATACTTATAGCCTGTAACTTACAGA
CCTTTAATAAGAAAGCTCCCAACCATACCGGTGCCCCTACAGATGCCCCT
AAGAAGGCCTTCGGCCTTATATTGTGACTCTCTAGCCCTAACCCTAACGG
ATAATAACCGAACCCTCGTCTATGTCTGCAGATTGAAAAATTTCACTTGC
ATCCTGGTGGATGATATCATCTGCCAACCTGCCCAAACAGGGGCAGTTTA
TCTCATGACTTTTGAAGTGTTCGCTTTTTGGGACGCTAAGGCTTGGGAAT
ATTAATTTTGAGGATAGGAACCTCATCCTAGCGCTCTAGAAATATCCGGA
GCAAAAAGTGCTGTTTTTTTCATGCTCCGGAACATCGGAAGATTCCGGAC
TACTTCTGGGAACACGATTGGGAATTGAAAATAAATGGCCTGCTGTTTTG
CAGTGCTTTATGTAGATAGTCCTTTTAGCGGGTCCTTGGATTTCACGATA
CAGCCCCTCTTTTTTCAAATGAAATATCTTTGTTATTATGACTCTGAGAT
AATAATACATTCCTGTAAACTCATAGGAAGGGTTTGGATATTGTCTCTGT
TTTATTTCGAAATTGAATTCCTGTGCGTTCAAAATTGAAATAAGGATGGC
AGGTGAAACGAATGAAAAAATTTGATAAAACTCCAACATTTTCGGATTTT
TTTACTATAAGGTTTGTAGAAGTAAGGAAAATTATTAGTCGGTTGGACGA
CGCAAACACATATTATTTGTGATCGCTGCCTAGTTAAGGATGCAATTACA
CGCTAATCTCCCTTTCGGATAGTGATAAGCTTATAATCGCACTCATATAG
AATTATAAACATTTGATAGTTGAGTTATTGTGTGTTTCTCAATTATTCCT
ATATGTTTCAACCTGTTTTATTGTATTCTTATAAAAGAAAAATTGTACAT
TTGTACACCTTTTTTTGTGGTACAGAGTGTTTTAAAAGTAAATTTAACTG
TTGGTTTGGTTTTAACTGAAAAAATAATAATAAGTTTTAATTCAATCATT
CATTTTTTTAAATCGACCAGGACCAGTCCCTTAATATTAATTCATAATGT
CCAGCAGAGTAATTTACACTATTTTGATATCTTAAAGTGTTATTAGAAAA
ACTCTTTATTGAACTATTTCAGGTTTAACCCACGTTTGGGAGTGTTCTAG
CACGCATTGCTATAGTGATTTTCAATTGAACTATGACACAATCTTTCTTA
TTTCAGGTTTCAACGTCGAGACTGTCGAATACAAAAACATCAGTTTCACT
GTATGGGATGTCGGAGGTCAAGATAAAATCCGTCCATTATGGAGACATTA
CTTTCAAAATACACAAGGTAAAAGCAACATACTTACCAGCAGTGTTCTGT
CACAGACAGATGCAATCTCTACAAATCCCAGAGAAATTGATCAACCCCTC
CCTCAAAGAGCAGTATATAATCCATAACACAAATAGTTAAGAAGGGGGTC
ATTACCCACCCCCTAGTCTAGAGCAACCCCCACTGTAGGTTCTACCCCCT
TTCATGCTGATGTGTTAAACCCCCTCCCCTTCTAGATGAACCTCCATAGT
GTCAGCCTGGGTTTAGGTCCCAGGCAAAAATTAGGTCCCCCTGAGTTTTA
AGACCTCCAAACCAGCAGGAGGGGGCTTACACTATGGACCTCCCCTTTCT
ACAAGAAATTCTTACCATGCCCCCTCGTTCTGCAATTTTCAGGACATCTC
AATCTTTACCCCTCCCCCTCTTTATAACAGTCATCTTTAAAGGTATGCTT
GTCCATTCATTTTTCAGGTTTAATTTTCGTTGTGGATTCAAATGATAGAG
AACGTGTTAATGAAGCAAAAGAAGAATTAAATAGAATGTTGAATGAAGAT
GAACTAAGGGATGCTGCTCTTCTTGTCTTCGCTAACAAACAGGTAACAAT
TTTATGCCAGGCTCAACTGACTTTTTGGTTGAGGGATCAAGAATGATCAA
AACCCTTAATATTACCAATAGACGATATCAGCTTTACCGAATTCTCCCTG
AATGATTACCCATGATGCATTGCGCAAAAAAAATCACGGACGATAACCCA
AACCCTAACAATGCATCATGGGTAATCATTCGGGGAGAATTCAGAAAGCC
GATATCGTCTATTGTTAAAGAGTGATTTGTTGTTGTTAATTACACTTAGG
GAACCAGACTATTACAGAAACATGACAATTTTGTTTTCTTGGTTTAATTC
TATCAGTGTACTAAGTGTTCTGTTGGTATTGATATGTCCTAGTGAATTTG
TTGTATTGGCAGATTAAAAATATCGCTATTTCTTTTAGGATTTACCAAAC
GCAATGAATGCCGCAGAAGTAACTGATAAATTGGGATTACATCAAATTAG
AAACCGAAGTTGGTACATTCAAGCCACTTGTGCTACTAGTGGTGACGGTT
TATACGAGGGTCTTGATTGGTTATCAAACGAATTGAAAAAGAGGAAGAAC
TAGATAATTGTTTTCAAATTTTTCAAACAGAGCTGATTGTAAAACATCTA
TATGGACGATCATAAAGAGACAGACGTTTTGTGTAGATAGTGAAATTGGT
TCCAACCACCCCATACGGTAACATTGTGATGTAAAGAGGTGCATACATGG
AAATTGTTGAATTATTTTATTGATTGCTGGATAAATACTGGAGGTTATTT
CAGTGATAAAAATACCTTTCAATTAAAATACCACACATCAAACCATATCA
AGGAATAGTAATATTTGGATACATAAATAATTAAATTGTTTTTTGGAATT
CTTATTTTTTTGTTTTTGTTTTTTTGTACATAATCAAATGTGTACCTATT
AAAAATTCTTTTACCATTTTTTGGGTCTTTTTAGCCTTAGTCCAGTTATA
CATTTAAATGTTCATCATATCTGCCATACTGTGATCTCTTTTTGTACACC
ATCAAATTACCATAACTCTCTGGTGATAGTCCTAGTGATTTTGTTATAAT
TTTCCATCTTAAATCTCACTATTTGAAGGCAACTCGCTTCTTACTGCACC
AAAGTCAAAACCAATCCAGATTTTTAGTCATATTCAGGGAAGTACTTTAT
ACTTGAATTGTAAATGGCTTAAAAGAATAAATTAAATTATACAGATATCT
TTTTTCTCGCATTTGTATTTCTCTCCAAACCCACTAACAATTAAACCCTT
TACATGTTTTTTTTTATAAGCAAGTGTATGCCCCTTGGCCAGGCTCGTGT
ATGCTTAAGTTCTCAAAGTATCCAGGCATAGATTATGCTTATTATATGCT
TATGAATCATGCTTATGATTCACCTCGAGCCAAGTTTTTATTGAAATTTC
AGAAATTTTGCAAAAATTTGTTCAGATTTTGGCAGCAGTGGAATGTGGGA
AACCGTGGAAAGTCTTTTTTTTTACTTGACCTCTACCCTCTACCAAACCT
TTTTAAGCTGATAAAAATGACAACTGGAAAAATATTTCAGGCTGACGTAT
ATGCTTATGTTATGTTTAGGAATTCTGCAAATCTGAGCCTTCATATGCTT
ATAAGCGTTATGCTTATAAAAAAATAGTATTGGAAGATCAAATTTTAATC
AAAACTGCGCAGATCTTTGGAATGGTTTTTGCCACAACGTAACAAATTAG
AGCTGGCTAGCGGGGTATTGGCCTGGGACTGGTTTGCGAAATACTTGGTA
TGTTCGATTCTCGTATTTTAACGTTTTTGGTACTTTAGACATCTTCGCCA
AATGCTAGTTTTCTTTTGAATTCATAAGTCTGAGCTGGTCTGAAACGACG
GTGCCAATACCCGCCATAAATTTTTAAGGAATTTGTACAATTCGGGGTAT
TATTGAGGGACTATAAGTAGGTTTCAGGTTGTCTTGGAAGGGTTTCATTC
ACACACCGTTAATCTAGTGCCTAGCTGACAACTTAAAAAGCCTGGAAAAA
CACAATTAAGCAAAAAAAAATTTAAATTTACGGGATTTTTGAATAATCTA
TTGGATTTTAGGAAAAATTTCCGGTGATGAAATGTTAGTCCTTGGTTTGA
CCGAATTTAAAGCAAAATCCCTGGAAAAATTGTCCAAAATATCGACCCCA
GTGGAAAAATAAATTGTACTTTAATTTTTGTTTCAATTGTTTTGTGCAAT
TTATTCCATCCAAACTAAATTTATGGACTTTCTCATCGAGTTTTGGTCCG
TTACTTTTACCCTCACTGGCTCAAAAATCCATTCCACCGGGGCTATGAGA
AGGGGGTGTTCTACACGAGCGTTTTAAAAAGGGGAATGTCATGGTTTGTC
TTTCCAACAGTTGCTGACTCAAACCCGACACAATATTGACCAATTTCAGG
AATTTCTTAATACTTGTCTTTGACTGCTGACTTGTCGAAAATGACGATTT
CAAAATATGTGTTAATTTTAAAAAGACAAAAACTCACGTTTTTACTGAAG
TCAGCATGTTAAATTTCAGAAATTGATTGGCCATTTGAAAAGGTTGTTTA
TTTTACAGAACATATTGAAAATATGAAATAAATTATGCAAAAGCTATTTT
AAAATGTGTCGATATCAGCAAAAAATAAACTGGAATAAATTATCGATGTG
GAAATACATGCATACGTCATTTCGAATAGATCACAATAAAAAAATCAATA
CTAAACTGATCATGGTGTAACTTTTCAAAAAACATGTTCAGCTCAAATCA
GGCATCGTCGATATTCGAAACGTGGCTACTATTGAAAAAATGTATATAAG
TTACGATGCACTTCCCAAAAATTATGATAAAATTTGATCAAGCGAGTGTT
CAACAAAATATAAGCTTAAGCCTCTCTTCGACTCGGCTGATATTTTTAAG
GTAAATTTGACCTGCATTAGACAAAAGGTTCTGAAATATTTTGGTCAAGC
AAGCAAAATCTGCTACGTATCACGCATCAAACGATCGTCTTGCTCTTTTG
ATAATCTTCTGTCATTATGGGTTTAATGCATTCCGTTTTCAAGAAATTTC
TTGGTTTAAAAAAAGATGTTCGTATTTTGTTGGTTGGGTTAGATGCTGCT
GGTAAAACGACAATTTTGTACAAATTGAAATTGGGAGAAATGGTGACGAC
AATACCTACTATTGGTAAGAAAATTTTCTATACCGTATTTTTCAACTACA
ATCATGGACAAAAATTATTTTCCCCTTCGCCCCATTCGGTCAATGAACGG
TGAGATGATGGCGTACACCGGACATTGCTGGGGAAGATGGTTCTTTTTTT
AATTTCTGAATTAACTTCCAGTGTTTTTTCTCAAACATTTCTGACCATGA
TTACACCCCAGTGGAACTTTTTTCCTCAGTGGGGATAAAACTAATGGGGA
AAGAAATTATATTCAGGGGTCACACTCTAAAAATCCCTATTATAGTATGA
TTTTATGCCAAAAAATGACCAATTTGTATGATTTTTTATGCCAAAACTAG
TCGGATTTTATGCCAAATTGTATGTTCTTTCTTCAAATTTTATGATTATT
TTATGCTAAAAATTTTTCCTCGAAAACTTCAACAATCCTAATATCATGGA
TTAGGTCTCAACCCATAAAACGAAAGAATATANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
ATTAGTCAACCCATAAAACGAAAGAATATATAAAAATAATACAAAAATAA
TAAAGATAATAACAAAAAGAAAAAGGTTTTTTCAAAAGGTCTAGGTACAG
CTAGATAAGACTGTTAAAACTGAAACATAAATCTTGTTGTAGCAGACTAA
AATGATAATTGACTTGAGCTTTCGTCATAAAGTTTTGGCATTATACTCCA
TAGCTGAATTTCATATTTTATTTGGATATTCTTTAAATATAGATAATGAC
GTCATTATGTAAAAAATCGGTTTTATTAAATTTTGGAATTTCCAATTTTA
AATTTGTATCATACAAAATCATAAAATCTTTCAGAAAAATTGACAACTTT
CATTACAATCAGCTATTACATTTTATCAGCCAATGAGAAAAATGTCAATA
GTTTCTGTTTTTTACTTCTCTTTAGTTCCTTCAGGGTTTGGTTCCTTTCA
AGAAAACCTCCATTCTAGGGGCCACAAACCTCCATTCTAACGACCATTAG
TATGTTAGTAAAAATCTTACCGAATTAATTTAGCCTCGTCATATTCGAAA
TCACAATTCAAAACTACGGTAAAAATTTCATTTTGATATCTACCGTAGCT
CATGAGAAATTGCTAAAATTCTAAACTTCCGTTCTAGGGGCCATTGAGAA
AAAGTGACTAAACTTTGAGTCAACAAAAAATGTATCTGACTTAAAAATGT
TTGAAAAAACTCTCTTGGGAAGTAGAGAAATAGAGAGGCTGAAGTTTGTT
TTGGAGGAAAACCATTTTAGATTCATCTATTTTTGAAGTCACCAGAGCGA
TTTCATTTTTGACCTCCGTTCTAGGGGCCATCCACTGTAAGGTTTTATCT
TCAAATTCTGAAATTGATTTTTTCACTATGGTCAGAGCCCTTAAAAAGGA
TCGCCTCGCTTGCTACTTTCGATTATTGATAATAAATGCACAAATTCTCA
TTACGACTTGCTACTTGTTAGTCTAAATTAACCTTAAAAATCTTCTTTTT
GCGATACAGAAACGAAATGTACTTTGCAGGAAGAAACCTTTCTGAAATTC
TATGACTATGAAATAATCAGTCCGGAACCTTTTTGCTGACAAAATTCTTA
AAACCTTTTGCAAAAACCCATATAGAAAAACTAATAAATATTTTGAGCAA
AAATAAAGCTCATCACCATATATATCTGTATATATATAAATAAATTTTAC
AATAAAAATCTATTCCTAGATAAAAGATTGGACCTAGAACTAAGTTCAGT
GAAGTGGTTTTATGTCGATCTACAAAGTTTCTTGCCTTAGGAAAAATTCC
TGGCTTTTTGGTCAAATTTTATGCTCNGAGTTCAGTGAATTGGTTTTATG
TCGATCTACAAAGTTTCTAACCTTAGGAAAAATTCCTGGCTTTTTGGTCA
AATTTTATGCTCAGTATGCCAAGACCTTATATTTTATGCTATTTTATGCC
AATTTTGATAAAAAAAGATTAAATTGTATGATATTGTATGATTGTATGCA
GAGTGTGACCCCTGTATATTGTTCCAAGGTAAAAAGATCCAGTGGGGATC
GAGGTGGGGACGGTTTTGGAATGCAATTTCTAAACATGGAAACTCGAGTG
GGGATGAAATGAAAGTCAATTTCCCAGTGGGGCTGAAATTCAATTTTCCC
ACCGGGGACGAAATTTTGGCTTAATTTTTCGTGAAGCTGGGGTCCCAGCG
GGTCTGTGACACCGGGGTGAATGATTGTAGATATTCTTTTCTCTATGTTA
TTAGGCCAAATAATAACCAAGGGGATTTGTTCTCTATGCTACCACACAGT
TCTGTAAAGGTCTGCAGAGATTCTGACTATTGTGTTATGTTATACATCCT
TGTTCCATTTCAGACCCGTTGCGAATTTTCGCCAGTGAGCCAGTGAGTTT
AAAATGTGAGGAGCCAAACCCAAGAAATTCTTCCTTTTAAATGAACGAGG
GTCTGAAATTCTTTTCTTTATGCTTCTGACAACCTCCGGCGATTTTCTTG
AAAAATGATGAACGATAGTGCCCTCTAATGTGGTTCCAGTTCAATTTTCA
TTTTTTGATACCCAGGTTTCAATGTCGAGACTGTCGAATACAAAAACATC
ACCTTCACTGTATGGGATGTAGGAGGTCAAGATAAAATCCGTCCATTATG
GAGACATTACTTTCAAAATACACAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012997-exon-sc0000161-1575043694:37164..37468 | TCONS_00012997-exon-sc0000161-1575043694:37164..37468 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1575043694:35153..35212 | TCONS_00012997-exon-sc0000161-1575043694:35153..35212 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1575043694:28590..28643 | TCONS_00012997-exon-sc0000161-1575043694:28590..28643 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1510915933:37164..37468 | TCONS_00012997-exon-sc0000161-1510915933:37164..37468 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1510915933:35153..35212 | TCONS_00012997-exon-sc0000161-1510915933:35153..35212 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1510915933:28590..28643 | TCONS_00012997-exon-sc0000161-1510915933:28590..28643 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1491911889:37164..37468 | TCONS_00012997-exon-sc0000161-1491911889:37164..37468 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1491911889:35153..35212 | TCONS_00012997-exon-sc0000161-1491911889:35153..35212 | Clytia hemisphaerica | exon |
| TCONS_00012997-exon-sc0000161-1491911889:28590..28643 | TCONS_00012997-exon-sc0000161-1491911889:28590..28643 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000161 | supercontig | sc0000161:28590..37468 - |
Blast
BLAST of TCONS_00012997 vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 1.473e-52 Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 2
Query: 170 FQSLFKNLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 418
F +LFK LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct: 5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
The following BLAST results are available for this feature:
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