TCONS_00013003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013003
Unique NameTCONS_00013003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013003 ID=TCONS_00013003|Name=TCONS_00013003|organism=Clytia hemisphaerica|type=transcript|length=3114bp
GGTCAATTCTTTTGCTCTTATATAGCACACCATGTCATGTGATTAGCTTG
CTTATCGCTGAACGACTTTGAATATGCTTCAACACAGTAGGTGGCGGAAA
TCTGTAAGAATCAATGTGAATCAATGCCATCTATAATTATCGCTGATAAT
ACGTTTATTGACATAGGATTAATATAATTTCTGAATCTCGCAGGATATAA
AACCATGAAAACCTTAATTAATTGAATTAAGAAGTGCTAGCAGATAAAGC
AACAACTAATTAGAAATTTCATCTACCAATTTTAGTTAGTTAAGATCAAC
TTGAAATTGGTTACATATCAATAAATGGTCATGTTTGTAGTATGGTGTGC
TTATATCCTATCTGTTGTGACTGCATTGTCACCTTTTTGTCCTATTGACA
ACAAAGATGATGTACGTCGTGGAAATGAGACAGGCACCATAATGCGTTTG
TACGAATGTACTGGACAAAAAGAAGCTTATTTTCGCCCTCGAAATCAAAT
ATGCGGTGAAATGGTAAAGGAAACTGAGATTGCAAGAGATGTCGAAGTAG
ATATTGGATATGATAAGAATGGATTTTCGATGAAAAGTATCTTCGTTGGT
AACCCACTTTCAGAGCGGGTTTGGGACGGCAGTACATGCTTTTCATGGCG
TAAAAGTGTCATTGACCGAGACGGAGTAGAAAGAAGTAGCACTTGTGAAA
CACTTTGcaaatttgctgaaattttatACATCACCTATAAAGAAATCACT
CGATGTAGCTTTGAAGAAGGATGCTCAGTATTGGAATACAGTATCAAGGT
TGTATTAGACCCACAAGGTACAgccaaaaatgaacttgaaaactGTTATC
TTTACGGTGGAAACTCTGGTGATGTAGTAGCTGACAAAATATGGATAGAT
GTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCCTGTGATCGCAT
CAAAACAAACGTGTTTCTTCAACGAGGTCGAATCATCAACATGAATCAAG
ATGTCAACAATCATCCATTCATGGTAAAATTTTATGGTAGCTACCTCTGC
ACCGCACTTCGACAGTACAATCGAGTCACTAAAAGCTATCGATGTTCTGT
AATGTGTTACAATGTTTTTGAAAGCGATGACGAAGAAAGCCTAGGTATCG
AGTATGCTGAATATGATCGAACAATGAAGTGTGCTTCGGAAGGTGTATGT
GTCGGATATCCAAACAGATATTTCATAATCACTGCTAAAAATGATACCAG
CTCTAAAGAAAACGATGGTCTAGTCATCAAACCGAGTCTTATATCAGCTA
TAATTGTTTTCATGGCCTCCGTAGCTGTTTTGAAAATCGTTATTTaaaaa
gaatAGTACCCGTGCAAAGAAACACTGAAACGTCAAAAACTTCGAAAAAT
CTTTATATATAATttgttttaagaacattttgaaaatgtttttttcttta
gtaGCACCAAACTCTGTATCTGTTTATGCATAAAGATGAGGCGTCTGTCA
TCATCACACATTAATTAATCCTGAACAATTTATAAGTAGACACTTTTATA
TTGTCTATATTCTGCCTATTACTTGCAATTAAGTTCATGACAACATATAT
GTGTTTAGTTAATTTTCTTGTTAATTCTTTTTCGCTATGATGAAAACATT
AACTGGCTTATGGTATGTATGGATCTACGAATTTCCCTAAAAGTGTAAAT
CAATATTGATATTAATCATGCTTCTCTGGCTCTCCTTTAAGCAGATAGTT
TTACCTTCCTGAAAAAGCTTCATGTTACAATCGCAAGAAGTGTAGGCTGC
TGTTGAATCACGAGCGAAGccagaaccccccccccttctcaGGTTGTAAA
ATGTTAACGACTTTGGTTACGTGAGCTATTATGTAACAACAGGAAACCCA
TGTCCCATTTTTACGAGTCTCATCAGTGTACACCGTTTCTACTATTTGAA
AGCAAATATCTACTAATCTAGATAGAAGTAAGGCAAATTTAACGATACTT
CTTTTATTTACCCTCTTATCAGAACCTTTTTATCACCTTAAAATGACCTT
CCTCTATGTTTTCCTGTTCAGCCTTCCTTATGacaatttttatgattttg
ttattttgaaatatgaaagttAACCCCATTAACCCCCACTGGGATTATAT
AATCAAGtaattaagttttatttttaggagTAGGGACCTAGTATATATAG
AGgtcaattttcttttataagtaGGTTAGTGAAGTCAAATATTGGAACTT
CAACGATTATTTTCATAATGTAAGTGTAACTTTTCTTTTGTAACTCTAGG
AGTTGGTTATGTCaaagattatttttataggGAACTGACTTTGTCTAAGT
TCATTCTGTACTCGTCTccccttttgttttgtttactcTATCTGTTCATG
AAATTAAGTAAGTTCAGATGGAGGGCTCGGAAATCCCATTACACCAACTA
TTGAaccaagttttgttttgaatgtaGATTCTTTGTGCTAGACTGTTTCG
ACACTatcaatgttttaaaatttcttttccttgagtttgaatttcttaaa
ataatgttttcaaGATTATTTCGACCAATTTATCTAAAACCCCTTTTCGG
ATTTTCTCTGTTCTGATGCAAATTAGATTTTATGAAGGTAGGACAGGTAG
GGCCTCGACACTGCTTATATTCTTCTAACGAAATTCTTTTAGAGGCTGCT
TAATAAACGGTAGATCTTCTGTACGAAAATGTGCCGCTACTCGCTGATGT
TTGActaataatattttttagctGGCGAGGTGGTTGAAAAAGTAGAAGCG
TGTTTTCAAAGGCATTATAGTTGGCTATAGATTACATTTACGTagaaaca
atgtttttcattggtttttcatcattattattGACTTGATTTTCAGGGAA
AAGTGTAACCTTTTCCCAACGATATATGATACTTGCATTTATGGATAACC
TTTtttttcgaacattttttcCGGTTTTCAACTGTCCGAAAAAGTGGCTT
CCCCTGCCCGGATTGATGGGTACCCTATTAAGAACATTTGTGCCAATTTT
CAACTTGATGACAATTTTGTCCAGGTTGTGGTGAAATATAGTTAAATCGA
CTATTTAATAATTT
Run BLAST on NCBI

transcript from alignment at sc0000161:147791..151065-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013003 ID=TCONS_00013003|Name=TCONS_00013003|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at sc0000161:147791..151065- (Clytia hemisphaerica)
GGTCAATTCTTTTGCTCTTATATAGCACACCATGTCATGTGATTAGCTTG
CTTATCGCTGAACGACTTTGAATATGCTTCAACACAGTAGGTGGCGGAAA
TCTGTAAGAATCAATGTGAATCAATGCCATCTATAATTATCGCTGATAAT
ACGTTTATTGACATAGGATTAATATAATTTCTGAATCTCGCAGGATATAA
AACCATGAAAACCTTAATTAATTGAATTAAGAAGTGCTAGCAGATAAAGC
AACAACTAATTAGAAATTTCATCTACCAATTTTAGTTAGTTAAGATCAAC
TTGAAATTGGTTACATATCAATAAATGGTCATGTTTGTAGTATGGTGTGC
TTATATCCTATCTGTTGTGACTGCATTGTCACCTTTTTGTCCTATTGACA
ACAAAGATGATGTACGTCGTGGAAATGAGACAGGCACCATAATGCGTTTG
TACGAATGTACTGGACAAAAAGAAGCTTATTTTCGCCCTCGAAATCAAAT
ATGCGGTGAAATGGTAAAGGAAACTGAGATTGCAAGAGATGTCGAAGTAG
ATATTGGATATGATAAGAATGGATTTTCGATGAAAAGTATCTTCGTTGGT
AACCCACTTTCAGAGCGGGTTTGGGACGGCAGTACATGCTTTTCATGGCG
TAAAAGTGTCATTGACCGAGACGGAGTAGAAAGAAGTAGCACTTGTGAAA
CACTTTGCAAATTTGCTGAAATTTTATACATCACCTATAAAGAAATCACT
CGATGTAGCTTTGAAGAAGGATGCTCAGTATTGGAATACAGTATCAAGGT
TGTATTAGACCCACAAGGTACAGCCAAAAATGAACTTGAAAACTGTTATC
TTTACGGTGGAAACTCTGGTGATGTAGTAGCTGACAAAATATGGATAGAT
GTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCCTGTGATCGCAT
CAAAACAAACGTGTTTCTTCAACGAGGTCAAATCATCAACATGAACCNGA
AAACTGTTATCTTTACGGTGGAAACTCCGGTGATGTAGTAGCTGACAAAA
TATGGATAGATGTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCC
TGTGAACGCATCAAAACAAACATGCTTCTTCAACGAGGTCGAATCATCAA
CATGAATCAAGATGTCAACAATCATCCATTCATGGTAAAATTTTATGGTA
GCTACCTCTGCACCGCACTTCGACAGTACAATCGAGTCACTAAAAGCTAT
CGATGTTCTGTAATGTGTTACAATGTTTTTGAAAGCGATGACGAAGAAAG
CCTAGGTATCGAGTATGCTGAATATGATCGAACAATGAAGTGTGCTTCGG
AAGGTGTATGTGTCGGATATCCAAACAGATATTTCATAATCACTGCTAAA
AATGATACCAGCTCTAAAGAAAACGATGGTCTAGTCATCAAACCGAGTCT
TATATCAGCTATAATTGTTTTCATGGCCTCCGTAGCTGTTTTGAAAATCG
TTATTTAAAAAGAATAGTACCCGTGCAAAGAAACACTGAAACGTCAAAAA
CTTCGAAAAATCTTTATATATAATTTGTTTTAAGAACATTTTGAAAATGT
TTTTTTCTTTAGTAGCACCAAACTCTGTATCTGTTTATGCATAAAGATGA
GGCGTCTGTCATCATCACACATTAATTAATCCTGAACAATTTATAAGTAG
ACACTTTTATATTGTCTATATTCTGCCTATTACTTGCAATTAAGTTCATG
ACAACATATATGTGTTTAGTTAATTTTCTTGTTAATTCTTTTTCGCTATG
ATGAAAACATTAACTGGCTTATGGTATGTATGGATCTACGAATTTCCCTA
AAAGTGTAAATCAATATTGATATTAATCATGCTTCTCTGGCTCTCCTTTA
AGCAGATAGTTTTACCTTCCTGAAAAAGCTTCATGTTACAATCGCAAGAA
GTGTAGGCTGCTGTTGAATCACGAGCGAAGCCAGAACCCCCCCCCCTTCT
CAGGTTGTAAAATGTTAACGACTTTGGTTACGTGAGCTATTATGTAACAA
CAGGAAACCCATGTCCCATTTTTACGAGTCTCATCAGTGTACACCGTTTC
TACTATTTGAAAGCAAATATCTACTAATCTAGATAGAAGTAAGGCAAATT
TAACGATACTTCTTTTATTTACCCTCTTATCAGAACCTTTTTATCACCTT
AAAATGACCTTCCTCTATGTTTTCCTGTTCAGCCTTCCTTATGACAATTT
TTATGATTTTGTTATTTTGAAATATGAAAGTTAACCCCATTAACCCCCAC
TGGGATTATATAATCAAGTAATTAAGTTTTATTTTTAGGAGTAGGGACCT
AGTATATATAGAGGTCAATTTTCTTTTATAAGTAGGTTAGTGAAGTCAAA
TATTGGAACTTCAACGATTATTTTCATAATGTAAGTGTAACTTTTCTTTT
GTAACTCTAGGAGTTGGTTATGTCAAAGATTATTTTTATAGGGAACTGAC
TTTGTCTAAGTTCATTCTGTACTCGTCTCCCCTTTTGTTTTGTTTACTCT
ATCTGTTCATGAAATTAAGTAAGTTCAGATGGAGGGCTCGGAAATCCCAT
TACACCAACTATTGAACCAAGTTTTGTTTTGAATGTAGATTCTTTGTGCT
AGACTGTTTCGACACTATCAATGTTTTAAAATTTCTTTTCCTTGAGTTTG
AATTTCTTAAAATAATGTTTTCAAGATTATTTCGACCAATTTATCTAAAA
CCCCTTTTCGGATTTTCTCTGTTCTGATGCAAATTAGATTTTATGAAGGT
AGGACAGGTAGGGCCTCGACACTGCTTATATTCTTCTAACGAAATTCTTT
TAGAGGCTGCTTAATAAACGGTAGATCTTCTGTACGAAAATGTGCCGCTA
CTCGCTGATGTTTGACTAATAATATTTTTTAGCTGGCGAGGTGGTTGAAA
AAGTAGAAGCGTGTTTTCAAAGGCATTATAGTTGGCTATAGATTACATTT
ACGTAGAAACAATGTTTTTCATTGGTTTTTCATCATTATTATTGACTTGA
TTTTCAGGGAAAAGTGTAACCTTTTCCCAACGATATATGATACTTGCATT
TATGGATAACCTTTTTTTTCGAACATTTTTTCCGGTTTTCAACTGTCCGA
AAAAGTGGCTTCCCCTGCCCGGATTGATGGGTACCCTATTAAGAACATTT
GTGCCAATTTTCAACTTGATGACAATTTTGTCCAGGTTGTGGTGAAATAT
AGTTAAATCGACTATTTAATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007289XLOC_007289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013003-exon-sc0000161-1575043694:150090..151065TCONS_00013003-exon-sc0000161-1575043694:150090..151065Clytia hemisphaericaexon
TCONS_00013003-exon-sc0000161-1575043694:147791..149928TCONS_00013003-exon-sc0000161-1575043694:147791..149928Clytia hemisphaericaexon
TCONS_00013003-exon-sc0000161-1510915933:150090..151065TCONS_00013003-exon-sc0000161-1510915933:150090..151065Clytia hemisphaericaexon
TCONS_00013003-exon-sc0000161-1510915933:147791..149928TCONS_00013003-exon-sc0000161-1510915933:147791..149928Clytia hemisphaericaexon
TCONS_00013003-exon-sc0000161-1491911889:150090..151065TCONS_00013003-exon-sc0000161-1491911889:150090..151065Clytia hemisphaericaexon
TCONS_00013003-exon-sc0000161-1491911889:147791..149928TCONS_00013003-exon-sc0000161-1491911889:147791..149928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:147791..151065 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804327	0.0308403	0	0	0.100888	0.0346233	0.0752776	0.0295297	0.0574443	0.076723	0.0757957	0.0544289	1.01402	0.522928	0.0960029	0	0	0	0	0	0.0922454	0.0414426	0.015027	0.00663918	0.664576	0.29545	0.135859	0	0.0295753	0.0407727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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