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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013004 ID=TCONS_00013004|Name=TCONS_00013004|organism=Clytia hemisphaerica|type=transcript|length=3114bp
GGTCAATTCTTTTGCTCTTATATAGCACACCATGTCATGTGATTAGCTTG
CTTATCGCTGAACGACTTTGAATATGCTTCAACACAGTAGGTGGCGGAAA
TCTGTAAGAATCAATGTGAATCAATGCCATCTATAATTATCGCTGATAAT
ACGTTTATTGACATAGGATTAATATAATTTCTGAATCTCGCAGGATATAA
AACCATGAAAACCTTAATTAATTGAATTAAGAAGTGCTAGCAGATAAAGC
AACAACTAATTAGAAATTTCATCTACCAATTTTAGTTAGTTAAGATCAAC
TTGAAATTGGTTACATATCAATAAATGGTCATGTTTGTAGTATGGTGTGC
TTATATCCTATCTGTTGTGACTGCATTGTCACCTTTTTGTCCTATTGACA
ACAAAGATGATGTACGTCGTGGAAATGAGACAGGCACCATAATGCGTTTG
TACGAATGTACTGGACAAAAAGAAGCTTATTTTCGCCCTCGAAATCAAAT
ATGCGGTGAAATGGTAAAGGAAACTGAGATTGCAAGAGATGTCGAAGTAG
ATATTGGATATGATAAGAATGGATTTTCGATGAAAAGTATCTTCGTTGGT
AACCCACTTTCAGAGCGGGTTTGGGACGGCAGTACATGCTTTTCATGGCG
TAAAAGTGTCATTGACCGAGACGGAGTAGAAAGAAGTAGCACTTGTGAAA
CACTTTGcaaatttgctgaaattttatACATCACCTATAAAGAAATCACT
CGATGTAGCTTTGAAGAAGGATGCTCAGTATTGGAATACAGTATCAAGGT
TGTATTAGACCCACAAGGTACAgccaaaaatgaacttgaaaactGTTATC
TTTACGGTGGAAACTCTGGTGATGTAGTAGCTGACAAAATATGGATAGAT
GTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCCTGTGATCGCAT
CAAAACAAACGTGTTTCTTCAACGAGGTCAAATCATCAACATGAATCAAG
ATGTCAACAATCATCCATTCATGGTAAAATTTTATGGTAGCTACCTCTGC
ACCGCACTTCGACAGTACAATCGAGTCACTAAAAGCTATCGATGTTCTGT
AATGTGTTACAATGTTTTTGAAAGCGATGACGAAGAAAGCCTAGGTATCG
AGTATGCTGAATATGATCGAACAATGAAGTGTGCTTCGGAAGGTGTATGT
GTCGGATATCCAAACAGATATTTCATAATCACTGCTAAAAATGATACCAG
CTCTAAAGAAAACGATGGTCTAGTCATCAAACCGAGTCTTATATCAGCTA
TAATTGTTTTCATGGCCTCCGTAGCTGTTTTGAAAATCGTTATTTaaaaa
gaatAGTACCCGTGCAAAGAAACACTGAAACGTCAAAAACTTCGAAAAAT
CTTTATATATAATttgttttaagaacattttgaaaatgtttttttcttta
gtaGCACCAAACTCTGTATCTGTTTATGCATAAAGATGAGGCGTCTGTCA
TCATCACACATTAATTAATCCTGAACAATTTATAAGTAGACACTTTTATA
TTGTCTATATTCTGCCTATTACTTGCAATTAAGTTCATGACAACATATAT
GTGTTTAGTTAATTTTCTTGTTAATTCTTTTTCGCTATGATGAAAACATT
AACTGGCTTATGGTATGTATGGATCTACGAATTTCCCTAAAAGTGTAAAT
CAATATTGATATTAATCATGCTTCTCTGGCTCTCCTTTAAGCAGATAGTT
TTACCTTCCTGAAAAAGCTTCATGTTACAATCGCAAGAAGTGTAGGCTGC
TGTTGAATCACGAGCGAAGccagaaccccccccccttctcaGGTTGTAAA
ATGTTAACGACTTTGGTTACGTGAGCTATTATGTAACAACAGGAAACCCA
TGTCCCATTTTTACGAGTCTCATCAGTGTACACCGTTTCTACTATTTGAA
AGCAAATATCTACTAATCTAGATAGAAGTAAGGCAAATTTAACGATACTT
CTTTTATTTACCCTCTTATCAGAACCTTTTTATCACCTTAAAATGACCTT
CCTCTATGTTTTCCTGTTCAGCCTTCCTTATGacaatttttatgattttg
ttattttgaaatatgaaagttAACCCCATTAACCCCCACTGGGATTATAT
AATCAAGtaattaagttttatttttaggagTAGGGACCTAGTATATATAG
AGgtcaattttcttttataagtaGGTTAGTGAAGTCAAATATTGGAACTT
CAACGATTATTTTCATAATGTAAGTGTAACTTTTCTTTTGTAACTCTAGG
AGTTGGTTATGTCaaagattatttttataggGAACTGACTTTGTCTAAGT
TCATTCTGTACTCGTCTccccttttgttttgtttactcTATCTGTTCATG
AAATTAAGTAAGTTCAGATGGAGGGCTCGGAAATCCCATTACACCAACTA
TTGAaccaagttttgttttgaatgtaGATTCTTTGTGCTAGACTGTTTCG
ACACTatcaatgttttaaaatttcttttccttgagtttgaatttcttaaa
ataatgttttcaaGATTATTTCGACCAATTTATCTAAAACCCCTTTTCGG
ATTTTCTCTGTTCTGATGCAAATTAGATTTTATGAAGGTAGGACAGGTAG
GGCCTCGACACTGCTTATATTCTTCTAACGAAATTCTTTTAGAGGCTGCT
TAATAAACGGTAGATCTTCTGTACGAAAATGTGCCGCTACTCGCTGATGT
TTGActaataatattttttagctGGCGAGGTGGTTGAAAAAGTAGAAGCG
TGTTTTCAAAGGCATTATAGTTGGCTATAGATTACATTTACGTagaaaca
atgtttttcattggtttttcatcattattattGACTTGATTTTCAGGGAA
AAGTGTAACCTTTTCCCAACGATATATGATACTTGCATTTATGGATAACC
TTTtttttcgaacattttttcCGGTTTTCAACTGTCCGAAAAAGTGGCTT
CCCCTGCCCGGATTGATGGGTACCCTATTAAGAACATTTGTGCCAATTTT
CAACTTGATGACAATTTTGTCCAGGTTGTGGTGAAATATAGTTAAATCGA
CTATTTAATAATTT Run BLAST on NCBI protein sequence of TCONS_00013004-protein >TCONS_00013004-protein ID=TCONS_00013004-protein|Name=TCONS_00013004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MVMFVVWCAYILSVVTALSPFCPIDNKDDVRRGNETGTIMRLYECTGQKE
AYFRPRNQICGEMVKETEIARDVEVDIGYDKNGFSMKSIFVGNPLSERVW
DGSTCFSWRKSVIDRDGVERSSTCETLCKFAEILYITYKEITRCSFEEGC
SVLEYSIKVVLDPQGTAKNELENCYLYGGNSGDVVADKIWIDVDKCNQKA
HRKESCDRIKTNVFLQRGQIINMNQDVNNHPFMVKFYGSYLCTALRQYNR
VTKSYRCSVMCYNVFESDDEESLGIEYAEYDRTMKCASEGVCVGYPNRYF
IITAKNDTSSKENDGLVIKPSLISAIIVFMASVAVLKIVI Run BLAST on NCBI transcript from alignment at sc0000161:147791..151065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013004 ID=TCONS_00013004|Name=TCONS_00013004|organism=Clytia hemisphaerica|type=transcript|length=3275bp|location=Sequence derived from alignment at sc0000161:147791..151065- (Clytia hemisphaerica)
GGTCAATTCTTTTGCTCTTATATAGCACACCATGTCATGTGATTAGCTTG
CTTATCGCTGAACGACTTTGAATATGCTTCAACACAGTAGGTGGCGGAAA
TCTGTAAGAATCAATGTGAATCAATGCCATCTATAATTATCGCTGATAAT
ACGTTTATTGACATAGGATTAATATAATTTCTGAATCTCGCAGGATATAA
AACCATGAAAACCTTAATTAATTGAATTAAGAAGTGCTAGCAGATAAAGC
AACAACTAATTAGAAATTTCATCTACCAATTTTAGTTAGTTAAGATCAAC
TTGAAATTGGTTACATATCAATAAATGGTCATGTTTGTAGTATGGTGTGC
TTATATCCTATCTGTTGTGACTGCATTGTCACCTTTTTGTCCTATTGACA
ACAAAGATGATGTACGTCGTGGAAATGAGACAGGCACCATAATGCGTTTG
TACGAATGTACTGGACAAAAAGAAGCTTATTTTCGCCCTCGAAATCAAAT
ATGCGGTGAAATGGTAAAGGAAACTGAGATTGCAAGAGATGTCGAAGTAG
ATATTGGATATGATAAGAATGGATTTTCGATGAAAAGTATCTTCGTTGGT
AACCCACTTTCAGAGCGGGTTTGGGACGGCAGTACATGCTTTTCATGGCG
TAAAAGTGTCATTGACCGAGACGGAGTAGAAAGAAGTAGCACTTGTGAAA
CACTTTGCAAATTTGCTGAAATTTTATACATCACCTATAAAGAAATCACT
CGATGTAGCTTTGAAGAAGGATGCTCAGTATTGGAATACAGTATCAAGGT
TGTATTAGACCCACAAGGTACAGCCAAAAATGAACTTGAAAACTGTTATC
TTTACGGTGGAAACTCTGGTGATGTAGTAGCTGACAAAATATGGATAGAT
GTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCCTGTGATCGCAT
CAAAACAAACGTGTTTCTTCAACGAGGTCAAATCATCAACATGAACCNGA
AAACTGTTATCTTTACGGTGGAAACTCCGGTGATGTAGTAGCTGACAAAA
TATGGATAGATGTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCC
TGTGAACGCATCAAAACAAACATGCTTCTTCAACGAGGTCGAATCATCAA
CATGAATCAAGATGTCAACAATCATCCATTCATGGTAAAATTTTATGGTA
GCTACCTCTGCACCGCACTTCGACAGTACAATCGAGTCACTAAAAGCTAT
CGATGTTCTGTAATGTGTTACAATGTTTTTGAAAGCGATGACGAAGAAAG
CCTAGGTATCGAGTATGCTGAATATGATCGAACAATGAAGTGTGCTTCGG
AAGGTGTATGTGTCGGATATCCAAACAGATATTTCATAATCACTGCTAAA
AATGATACCAGCTCTAAAGAAAACGATGGTCTAGTCATCAAACCGAGTCT
TATATCAGCTATAATTGTTTTCATGGCCTCCGTAGCTGTTTTGAAAATCG
TTATTTAAAAAGAATAGTACCCGTGCAAAGAAACACTGAAACGTCAAAAA
CTTCGAAAAATCTTTATATATAATTTGTTTTAAGAACATTTTGAAAATGT
TTTTTTCTTTAGTAGCACCAAACTCTGTATCTGTTTATGCATAAAGATGA
GGCGTCTGTCATCATCACACATTAATTAATCCTGAACAATTTATAAGTAG
ACACTTTTATATTGTCTATATTCTGCCTATTACTTGCAATTAAGTTCATG
ACAACATATATGTGTTTAGTTAATTTTCTTGTTAATTCTTTTTCGCTATG
ATGAAAACATTAACTGGCTTATGGTATGTATGGATCTACGAATTTCCCTA
AAAGTGTAAATCAATATTGATATTAATCATGCTTCTCTGGCTCTCCTTTA
AGCAGATAGTTTTACCTTCCTGAAAAAGCTTCATGTTACAATCGCAAGAA
GTGTAGGCTGCTGTTGAATCACGAGCGAAGCCAGAACCCCCCCCCCTTCT
CAGGTTGTAAAATGTTAACGACTTTGGTTACGTGAGCTATTATGTAACAA
CAGGAAACCCATGTCCCATTTTTACGAGTCTCATCAGTGTACACCGTTTC
TACTATTTGAAAGCAAATATCTACTAATCTAGATAGAAGTAAGGCAAATT
TAACGATACTTCTTTTATTTACCCTCTTATCAGAACCTTTTTATCACCTT
AAAATGACCTTCCTCTATGTTTTCCTGTTCAGCCTTCCTTATGACAATTT
TTATGATTTTGTTATTTTGAAATATGAAAGTTAACCCCATTAACCCCCAC
TGGGATTATATAATCAAGTAATTAAGTTTTATTTTTAGGAGTAGGGACCT
AGTATATATAGAGGTCAATTTTCTTTTATAAGTAGGTTAGTGAAGTCAAA
TATTGGAACTTCAACGATTATTTTCATAATGTAAGTGTAACTTTTCTTTT
GTAACTCTAGGAGTTGGTTATGTCAAAGATTATTTTTATAGGGAACTGAC
TTTGTCTAAGTTCATTCTGTACTCGTCTCCCCTTTTGTTTTGTTTACTCT
ATCTGTTCATGAAATTAAGTAAGTTCAGATGGAGGGCTCGGAAATCCCAT
TACACCAACTATTGAACCAAGTTTTGTTTTGAATGTAGATTCTTTGTGCT
AGACTGTTTCGACACTATCAATGTTTTAAAATTTCTTTTCCTTGAGTTTG
AATTTCTTAAAATAATGTTTTCAAGATTATTTCGACCAATTTATCTAAAA
CCCCTTTTCGGATTTTCTCTGTTCTGATGCAAATTAGATTTTATGAAGGT
AGGACAGGTAGGGCCTCGACACTGCTTATATTCTTCTAACGAAATTCTTT
TAGAGGCTGCTTAATAAACGGTAGATCTTCTGTACGAAAATGTGCCGCTA
CTCGCTGATGTTTGACTAATAATATTTTTTAGCTGGCGAGGTGGTTGAAA
AAGTAGAAGCGTGTTTTCAAAGGCATTATAGTTGGCTATAGATTACATTT
ACGTAGAAACAATGTTTTTCATTGGTTTTTCATCATTATTATTGACTTGA
TTTTCAGGGAAAAGTGTAACCTTTTCCCAACGATATATGATACTTGCATT
TATGGATAACCTTTTTTTTCGAACATTTTTTCCGGTTTTCAACTGTCCGA
AAAAGTGGCTTCCCCTGCCCGGATTGATGGGTACCCTATTAAGAACATTT
GTGCCAATTTTCAACTTGATGACAATTTTGTCCAGGTTGTGGTGAAATAT
AGTTAAATCGACTATTTAATAATTT Coding sequence (CDS) from alignment at sc0000161:147791..151065- >TCONS_00013004 ID=TCONS_00013004|Name=TCONS_00013004|organism=Clytia hemisphaerica|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000161:147791..151065- (Clytia hemisphaerica)
ATGAATCAAGATGTCAACAATCATCCATTCATGGTAAAATTTTATGGTAG
CTACCTCTGCACCGCACTTCGACAGTACAATCGAGTCACTAAAAGCTATC
GATGTTCTGTAATGTGTTACAATGTTTTTGAAAGCGATGACGAAGAAAGC
CTAGGTATCGAGTATGCTGAATATGATCGAACAATGAAGTGTGCTTCGGA
AGGTGTATGTGTCGGATATCCAAACAGATATTTCATAATCACTGCTAAAA
ATGATACCAGCTCTAAAGAAAACGATGGTCTAGTCATCAAACCGAGTCTT
ATATCAGCTATAATTGTTTTCATGGCCTCCGTAGCTGTTTTGAAAATCGT
TATTTAAATGGTCATGTTTGTAGTATGGTGTGCTTATATCCTATCTGTTG
TGACTGCATTGTCACCTTTTTGTCCTATTGACAACAAAGATGATGTACGT
CGTGGAAATGAGACAGGCACCATAATGCGTTTGTACGAATGTACTGGACA
AAAAGAAGCTTATTTTCGCCCTCGAAATCAAATATGCGGTGAAATGGTAA
AGGAAACTGAGATTGCAAGAGATGTCGAAGTAGATATTGGATATGATAAG
AATGGATTTTCGATGAAAAGTATCTTCGTTGGTAACCCACTTTCAGAGCG
GGTTTGGGACGGCAGTACATGCTTTTCATGGCGTAAAAGTGTCATTGACC
GAGACGGAGTAGAAAGAAGTAGCACTTGTGAAACACTTTGCAAATTTGCT
GAAATTTTATACATCACCTATAAAGAAATCACTCGATGTAGCTTTGAAGA
AGGATGCTCAGTATTGGAATACAGTATCAAGGTTGTATTAGACCCACAAG
GTACAGCCAAAAATGAACTTGAAAACTGTTATCTTTACGGTGGAAACTCT
GGTGATGTAGTAGCTGACAAAATATGGATAGATGTTGACAAATGCAACCA
GAAAGCACACCGAAAGGAATCCTGTGATCGCATCAAAACAAACGTGTTTC
TTCAACGAGGTCAAATCATCAACATGAATCAAGATGTCAACAATCATCCA
TTCATGGTAAAATTTTATGGTAGCTACCTCTGCACCGCACTTCGACAGTA
CAATCGAGTCACTAAAAGCTATCGATGTTCTGTAATGTGTTACAATGTTT
TTGAAAGCGATGACGAAGAAAGCCTAGGTATCGAGTATGCTGAATATGAT
CGAACAATGAAGTGTGCTTCGGAAGGTGTATGTGTCGGATATCCAAACAG
ATATTTCATAATCACTGCTAAAAATGATACCAGCTCTAAAGAAAACGATG
GTCTAGTCATCAAACCGAGTCTTATATCAGCTATAATTGTTTTCATGGCC
TCCGTAGCTGTTTTGAAAATCGTTATTTAAATGGTCATGTTTGTAGTATG
GTGTGCTTATATCCTATCTGTTGTGACTGCATTGTCACCTTTTTGTCCTA
TTGACAACAAAGATGATGTACGTCGTGGAAATGAGACAGGCACCATAATG
CGTTTGTACGAATGTACTGGACAAAAAGAAGCTTATTTTCGCCCTCGAAA
TCAAATATGCGGTGAAATGGTAAAGGAAACTGAGATTGCAAGAGATGTCG
AAGTAGATATTGGATATGATAAGAATGGATTTTCGATGAAAAGTATCTTC
GTTGGTAACCCACTTTCAGAGCGGGTTTGGGACGGCAGTACATGCTTTTC
ATGGCGTAAAAGTGTCATTGACCGAGACGGAGTAGAAAGAAGTAGCACTT
GTGAAACACTTTGCAAATTTGCTGAAATTTTATACATCACCTATAAAGAA
ATCACTCGATGTAGCTTTGAAGAAGGATGCTCAGTATTGGAATACAGTAT
CAAGGTTGTATTAGACCCACAAGGTACAGCCAAAAATGAACTTGAAAACT
GTTATCTTTACGGTGGAAACTCTGGTGATGTAGTAGCTGACAAAATATGG
ATAGATGTTGACAAATGCAACCAGAAAGCACACCGAAAGGAATCCTGTGA
TCGCATCAAAACAAACGTGTTTCTTCAACGAGGTCAAATCATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00013004-exon-sc0000161-1575043694:150076..151065 | TCONS_00013004-exon-sc0000161-1575043694:150076..151065 | Clytia hemisphaerica | exon |
| TCONS_00013004-exon-sc0000161-1575043694:147791..149914 | TCONS_00013004-exon-sc0000161-1575043694:147791..149914 | Clytia hemisphaerica | exon |
| TCONS_00013004-exon-sc0000161-1510915933:150076..151065 | TCONS_00013004-exon-sc0000161-1510915933:150076..151065 | Clytia hemisphaerica | exon |
| TCONS_00013004-exon-sc0000161-1510915933:147791..149914 | TCONS_00013004-exon-sc0000161-1510915933:147791..149914 | Clytia hemisphaerica | exon |
| TCONS_00013004-exon-sc0000161-1491911889:150076..151065 | TCONS_00013004-exon-sc0000161-1491911889:150076..151065 | Clytia hemisphaerica | exon |
| TCONS_00013004-exon-sc0000161-1491911889:147791..149914 | TCONS_00013004-exon-sc0000161-1491911889:147791..149914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:147791..151065 - |
Blast
The following BLAST results are available for this feature:
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