TCONS_00013043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013043
Unique NameTCONS_00013043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013043 ID=TCONS_00013043|Name=TCONS_00013043|organism=Clytia hemisphaerica|type=transcript|length=1739bp
TCTCCCTCAATTTTCTAGAGTTGGGTGTACAAGACTTTGTATGAATCATG
TTTTAACTTCCAACAACAGTTTGGCTACGGTAGTGAAGACTTTTTACTTT
GTATCAAACTTTGGTGTCAACTTTTTCAAGAACTTATTGATTTAGAAATT
CCCACAGCTGTTATATCCATATCATTGGCAAATATTATTGAGTCTTTATT
TCAAGATAGTCAATCTCCAATGAACCATTCAATTCAGTCTTTGAAGGact
taaaatatttcttattcaAACATGGAAAATTATCCATAACTGACTTAAAC
CAGCAAccccaaaaacaaaaaatcaaattctcaAGATATAGTCGTCATAG
CATTGATGTGGACAAAGAATCTGATTGCGATCataaatatgaaatatttt
caaaattctttgaattcgTTATTGACACCTTATCCGAGGATCATGAAATC
AGATCAATAACGAAGGAGCTTTTCTGTTTCATTTGCAAAGAACAGAAACC
GGAAACCTCGATAGATCTTCATATTCCAGACATCAATGTAGAACTATTAC
CAAGAACAACTTCAGATACATTCCCGAAAGTATATAAAGGTATTTTAATA
CCCTGCTCTAGTTGCCAATACTTTGATATTTTATCAGTGGTCGGTGAAAA
GCCGGTTCAATTAAAAGCTGTTTTGGTGAATACGTTAGCTTATGGTGATT
CTCTTGGAAATCCAAAGGATATTCGTATTCGCCAAGTCTTCGATTCTAAA
ACATATTCCAGGTCGaatgtttttgatgaatttaGAAACAACTCTTCCGG
GAACTTTCATGAACAAGGAATGATAACATCTCGAGGTCAAGAACAGATTG
GGACTTTGGAAAGTTCTCATTCCGATTCTGAAACACTTCAATCAACTTTT
CCTTATGAGAATTCCGAAAGACAAATCAGCAGTGAACCGTTTTCTAAACT
GAAAAAAACAGAGGTGAACTTTATGATACACCGTGGCGAATTGCCTTTAT
CTTTGATCGAATACTGTAAATCAAAACAGATTCAGATCCTCTCTGTTCCT
ACCTACGAGACTTTGTACAGAATCCAGAAAACCTGCGGTGGCAATATCAT
CTTTGATGTTGAAAATGATTTGAGGTTGACTGATATCTCTGACGTTCGTT
TGCAATGCCATACAGTGCAGTGGAGTGTTGATGACCGTATTGATTCTAAT
AAAAGAGTCAGTAGAAGTGCAACTGTATGCGGTTTTATTCAGATCGAAGA
TGGTCTGGTGAAGACTTTCGGCGACAGTTCTTACACTGTTTTGATCCAAG
GACGAGGACAAGATCTAGCTATCTTGCATAAAGAAGCATTTTTAAATACT
TTGAATCGGTTAAAACACATAGTTAGGAAACGAGATCTCGTGACAAAATC
TATTGAGGCTCATTTCGTCGAGTCGTTGAAATCAAAAGCTTTGAAGACTG
GAAATTATCATGAATGTCCACCCTGGATTCAACCAGATTTGGACCTCTTC
CAAGATCTAATTCAGGAAAAAGTCGTGCTTATGTTTGAAAAGTTTACTCG
ATGCTTTACAAAAGATGACAGCAAACTTGATATACAATGTTTAGATTTCA
AGAAGAGACTCTGGGTTGATAGTTTGAGATTTGTGACAATGATTGTTAAT
ACTAGATCCGCTGCTGAATTTTCTTTGTAGTGATATTTCACGAGATTATA
ACGTTTTGAAAGCTCCATATTGATTTATCGTCATTCCAT
Run BLAST on NCBI

transcript from alignment at sc0000161:468973..476136-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013043 ID=TCONS_00013043|Name=TCONS_00013043|organism=Clytia hemisphaerica|type=transcript|length=7164bp|location=Sequence derived from alignment at sc0000161:468973..476136- (Clytia hemisphaerica)
TCTCCCTCAATTTTCTAGAGTTGGGTGTACAAGACTTTGTATGAATCATG
TTTTAACTTCCAACAACAGTTTGGCTACGGTAGTGAAGACTTTTTACTTT
GTATCAAACTTTGGTGTCAACTTTTTCAAGAACTTATTGATTTAGTAAGT
ACTCTGGTAATTTACAATGATGTAGGGTAGAGTGAAAATTTGTAAGGAAT
GGCACCTTTACACTTGTTTCTAACATTTAAAAAAAAATGGATTCTTATAT
ATTAGCACTACAACTGTTGTGGAGTGAATTTTTAAAATTTACCTGGAAAT
CTAACTATTAGACTTTTTTCTTGAAAAAAGTCACTCTGAGCTCAACAGAG
ACTTTCAATGATTGATCATGATAGACTGTCTTTCCTTGGGCCGAAGTCTT
CTGACGGGAATCTCTTTTTTGCAACAGTTTTCCCGGAGATGAGGAAGTCA
GCCTTTCTCTATTACGGCAAAATACCATCAATTCTTTCAAACTTTCTCNC
TGTACCGCAAAGGAGATTTTTCGATTATAAGAAACTACGGAACATCGAAT
ATGATCGTTTGAAACAAGAAAACGGCATCAAGCGAGTTTTCTATGTACAT
CATTTCCAAAACATCACTCGCTTATTTCTTGGTTTCACTAAAAAAGTTTA
CGTTTTCAACCCGTTTTCTTGTCAATTGTTATACAAGCTAGACTTGTCTT
GCAGCCTGGAGACGCCATATTGTTACACACTTGATGCCAATTGGTCAGGC
AAAGAAGTATCATTATTCTGTTGGGATAATTTCAATTTTGTTTCTCTTAA
GATTTATCATCTTGAGGAGGAGTTTGATATGTCGTTAAAACAACAAGCCT
TGTTGGCTGTTCAAGCAAATTATTCACTGGAGACTTTGAAAAAGATGAGA
GTACCGAAATTTATTTTAGCATCACTGGGTGATACGTCAGTTTGATTGTT
TAACTGCTGTTCGTATTTTTAAGGGTTCGGCCTATTTGCCACGGAAAAAA
ATGAAGGTTCGACCTTTCAAATTTGTACTGGGAATGTGTCAATTTTTATG
ACACCTTACTGTCAGAATTGTCATCATGCTCAAGAAAATTATTAGGTGTC
AAAAAAAAGTTATATAAAAATTATGAATTTTTACACTGAACATATGTTTG
ACCAACGAACACAAAAAAGCCCCATCCCCCTAATTACGAATAGGGTTAAT
GATTCTCTCTGCAGATAGGGTAGTGTTTTAATAACTCGAGCCTAAAAAAG
CTTGAGATTTCCTCCATTACTCAAATAAGTTTTCTAACCCCTTTGGTTTG
GTTACAACGTCTTGATAAGTTTTCATAATCCGAACAATTCGTTCACCTTT
TTATTTGAAATTATTCAATTTTCTTACTATTAACTTGTTCGAAATTATTT
AAAACCGTTAAAAAGTTTAATTTATTATTCAATTTATATTAATTTTAATT
TATGATTGCGAATATTAAATTCTTTAGTTTTTGTAAGCAGTATTTTTATA
AGCAAACAAATTGTGTACATAGACGAATTTTCCCACCACACAAAATACAA
TCTAATTTATATAAGTTTTGTATAAAAGAATGAAACAGTTTTATTTCAAA
GATCGGCTTTATGACGTTTATGTTCGCATGACTCCCTATCTAGAGAAAAG
TTAACGACTGTCGATTTTACTACCCTTTTTTAACCTTTCAAGCACGCAAC
ATTTTTTGAAAATGTTCAAACTTCCAACTTTTTTCTTAAATCCCAATTTC
AAGATAGCATAAAAGCTTGTATCTCTTTAGGTATTTTCATACTCTGTTTA
AAAGCATTCAGAGAAACGTCTGTTGATTTTACTATACTTTTTTGTTAGCA
ACAATGAAAAATTATCTTCATTGACATGAACACCAATTTTTTTCAATGAG
CAAAATCTCGATTTTATTTATTTTAGTTACTACAACGTAAAATATTCCAT
TTTGAATTACCTTTTCAACAACCTCAAAAATTACTAACGTTTCTCTTTTC
CAGGGGAAATGAAAATAAATAAAAATTCCACCATGTATTCATTGAGTATG
AAATGAGGTGATCGAAGATCAATCATGAGGTCAACAACAAACGAATTGAC
CATAGTCCAATCTTTATGTATGTAGTAAGTTTTTACTTTCCTCCGCTGAA
GGTAATTATTTTGTCCTTTCCTTCTTCTTTTCAATGAAATTTCAAAAATT
ATTTTCTGACAAGGTAGCCCTTGATTACCGTTGATTTAACTTTTCCGGGA
TGTTTCTGCTGTTTTTCCAAGATAGCTGAAGATTGGAAAGGAAACTTTTT
TTAGAGGTACGGAAAATAGTTTGTGTTTAGTTAACTGGTTTACTCATTTT
CAACTACACAGCCGGACTAATGAGTGTCAGTTGAATGTGGTAAGGGAAAC
CCGAAAGCTTCTCTTTGGATGGACCTCCCTGGCCTGCTTGACCATCTATC
AATTCTAATATCAATTTTTACAATCTGCTATATCATAATGCATGAATGCA
AATACCTAAATCATTTGAATTTGAAACAGTAGCCAAAAAATCCAAGGAAA
GTGTACCCACCTTTCAAAAACTATTATCATTGCCAAAGGAGAGGGTATAG
CTATCTTCTTTTGTGGTAGCCAAAGATGAAGTGATGGAATCTATTAAATT
TATTCTAGTTTCCTTTATTCCTACAATATTGTTTATTTTCCTATCCACAG
GTCATGGTATAGGAAGCTTGACAGGGTATCAAAATAGGTAAGTGAAATTT
GAAATCCCCTAGAATTTTGAAAATTCTCTTGATATGCTTGACCTAAAAAA
TTCTTTCAATTGATTTAATTTTATTTTGTAATGTGCAAAACCCACCGAAT
TAGTTTCTAGAAGCTAATTTTAGGAACAACGAGGATCTGAATCTGTTTTA
ATTTACAGTATTTGATCAAAGGTAAAGACAATTCGCCAGAACAGAACAAT
ACTCCAGATTAACTTGGGCTCACTTTTAGAATAACTTTCTTAGCAACCTC
TAAATCAGCCACTGTGGGTCGCTCTTAAAATTGGCTTTTTTTCCGGCAAC
AGCAAGCATTTTTCAATGATGATTCAAATATCTTTTTATTCATAGTATAA
AATGCATCCAAGATGATGAAGAATATGTTTTAACTCGAAATGGTTTAACT
TATCTTAAAGCTCTCAATCACGATGTGAGAAATTACTGTTTTTATGAATA
TAAATTATAAATTATTACTTTCATCTCCTACTTTTCAGGCAGAAAGTTTC
GCGAGATTATTGAAAAAAAACGCGATATTTCACGAGTTTTACTTTAACAA
ACTTTTCTTTAGGAAGAAATTTTACTGATAAACTCGTGAGTCTTTTTTTA
ATTTTTCGTGAAAAATGCTAACATTTGGCTTTTCAGAAAAAGATTGAATA
TGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCGGGATAAGGCAAATTTTATAGAT
TTTCACTACCCCCTGACACTGGAGGACCCCATTTTCGAACATTTTCTGGA
AGAGCCCATTTTTTATCGGGAAATATTTCTGCTTCTAAAGTATCCTAAAG
AATCGAAGCGGGGTGACAAATTCTCTTATCTGTAGGAAACAATATTAAAA
ATATTTTAAGAGAAAATCTTTTTTTAGACAGGAAGGTGAAAATTTAGTTA
GTCTTTCGGTTTCCTCGTTAAAAATTTGACAATTAAGCTAAGGCACCTAA
CAAGAGCCAGTCTAAAGGACTGACTTAAATTTTACGCTTTCTCCCTCAAT
TTTCTAGAGTTGGGTGTACAAGACTTTGTATGAATCATGTTTTAACTTCC
AACAACAGTTTGGCTACGGTAGTGAAGACTTTTTACTTTGTATCAAACTT
TGGTGTCAACTTTTTCAAGAACTTATTGATTTAGTAAGTACTCTGGTAAT
TTACAATGATGTAGGGTAGAGTGAAAATTTGTAAGGAATGGCACCTTTAC
ACTTGTTTCTAACATTTAAAAAAAAATGGATTCTTATATATTAGCACTAC
AACTGTTGTGGAGTGAATTTTTAAAATTTACCTGGAAATCTAACTATTAG
ACTTTTTTCTTGAAAAAAGTCACTCTGAGCTCAACAGAGACTTTCAATGA
TTGATCATGATAGACTGTCTTTCCTTGGGCCGAAGTCTTCTGACGGGAAT
CTCTTTTTTGCAACAGTTTTCCCGGAGATGAGGAAGTCAGCCTTTCTCTA
TTACGGCAAAATACCATCAATTCTTTCAAACTTTCTCATTGTATTTATGT
TTGTTTCCAAAAACTTCAGGAAATTCCCACAGCTGTTATATCCATATCAT
TGGCAAATATTATTGAGTCTTTATTTCAAGATAGTCAATCTCCAATGAAC
CATTCAATTCAGTCTTTGAAGGACTTAAAATATTTCTTATTCAAACATGG
AAAATTATCCATAACTGACTTAAACCAGCAACCCCAAAAACAAAAAATCA
AATTCTCAAGATATAGTCGTCATAGCATTGATGTGGACAAAGAATCTGAT
TGCGATCATAAATATGAAATATTTTCAAAATTCTTTGAATTCGTTATTGA
CACCTTATCCGAGGATCATGAAATCAGATCAATAACGAAGGAGCTTTTCT
GTTTCATTTGCAAAGAACAGAAACCGGAAACCTCGATAGATCTTCATATT
CCAGACATCAATGTAGAACTATTACCAAGAACAACTTCAGATACATTCCC
GAAAGTATATAAAGGTATTTTAATACCCTGCTCTAGTTGCCAATACTTTG
ATATTTTATCAGTGGTCGGTGAAAAGCCGGTTCAATTAAAAGCTGTTTTG
GTGAATACGTTAGCTTATGGTGATTCTCTTGGAAATCCAAAGGATATTCG
TATTCGCCAAGTCTTCGATTCTAAAACATATTCCAGGTCGAATGTTTTTG
ATGAATTTAGAAACAACTCTTCCGGGAACTTTCATGAACAAGGAATGATA
ACATCTCGAGGTCAAGAACAGATTGGGACTTTGGAAAGTTCTCATTCCGA
TTCTGAAACACTTCAATCAACTTTTCCTTATGAGAATTCCGAAAGACAAA
TCAGCAGTGAACCGTTTTCTAAACTGAAAAAAACAGAGGTGAACTTTATG
ATACACCGTGGCGAATTGCCTTTATCTTTGATCGAATACTGTAAATCAAA
ACAGATTCAGATCCTCTCTGTTCCTACCTACGAGACTTTGTACAGAATCC
AGAAAACCTGCGGTGGCAATATCATCTTTGATGTTGAAAATGATTTGAGG
TTGACTGATATCTCTGACGTTCGTTTGCAATGCCATACAGTGCAGTGGAG
TGTTGATGACCGTATTGATTCTAATAAAAGAGTCAGTAGAAGTGCAACTG
TATGCGGTTTTATTCAGATCGAAGATGGTCTGGTGAAGACTTTCGGCGAC
AGTTCTTACACTGTTTTGATCCAAGGACGAGGACAAGATCTAGCTATCTT
GCATAAAGAAGCATTTTTAAATACTTTGAATCGGTTAAAACACATAGTTA
GGAAACGAGATCTCGTGACAAAATCTATTGAGGCTCATTTCGTCGAGTCG
TTGAAATCAAAAGCTTTGAAGACTGGAAATTATCATGAATGTCCACCCTG
GATTCAACCAGATTTGGACCTCTTCCAAGATCTAATTCAGGAAAAAGTCG
TGCTTATGTTTGAAAAGTTTACTCGATGCTTTACAAAAGATGACAGCAAA
CTTGATATACAATGTTTAGATTTCAAGAAGAGACTCTGGGTTGATAGTTT
GAGATTTGTGACAATGATTGTTAATACTAGATCCGCTGCTGAATTTTCTT
TGTAGTGATATTTCACGAGATTATAACGTTTTGAAAGCTCCATATTGATT
TATCGTCATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007295XLOC_007295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013043-exon-sc0000161-1575043694:475993..476136TCONS_00013043-exon-sc0000161-1575043694:475993..476136Clytia hemisphaericaexon
TCONS_00013043-exon-sc0000161-1575043694:468973..470567TCONS_00013043-exon-sc0000161-1575043694:468973..470567Clytia hemisphaericaexon
TCONS_00013043-exon-sc0000161-1510915933:475993..476136TCONS_00013043-exon-sc0000161-1510915933:475993..476136Clytia hemisphaericaexon
TCONS_00013043-exon-sc0000161-1510915933:468973..470567TCONS_00013043-exon-sc0000161-1510915933:468973..470567Clytia hemisphaericaexon
TCONS_00013043-exon-sc0000161-1491911889:475993..476136TCONS_00013043-exon-sc0000161-1491911889:475993..476136Clytia hemisphaericaexon
TCONS_00013043-exon-sc0000161-1491911889:468973..470567TCONS_00013043-exon-sc0000161-1491911889:468973..470567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:468973..476136 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97364	3.37892	1.42465	0.480718	6.84502e-06	0.0762718	2.28702	1.26794	1.21989	0.483531	1.24681	1.12407	1.82165	3.17036	2.3265	1.88878	0	1.68909	0.76124	1.50282	1.5363	0.458556	10.9476	5.60156	0.662178	4.67346	1.65869	0.323216	3.6535	4.7425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top