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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013052 ID=TCONS_00013052|Name=TCONS_00013052|organism=Clytia hemisphaerica|type=transcript|length=2067bp
GTTTGAAAACGGATTTTTCTCCTTGTTGTATATGAAGCACAAAACCTGGA
CACTTATAAGAAGTACACTGTGTTCGATTTCAGAAACTTTTGATAACGGG
AGCAACAAGATTGTTGGTTAGAGGTGAGCCATGAATAAAGACCTTCAATA
TGAGTTGAACATTGGAGTGTTGAACTCGACGACAACAATCAGTATAAAAA
CAATATACAAAAGGGTTAGCTCGACGAAAGAGTCTATTAAATTTGAAACG
AAAATCCCTGTTTTTAACCAAGTCCTAGTCGATGATAACGGGCTTATTAT
AGTGCACGATGAACTTATTGGTTCTTCAAATTTGCACTTAGCAGTGGTAG
GAGATGTGCCACCCTACGCTGAAAGCTGGCTAGAAGAGAATGGTGTAAGA
CCAATCAAAAGATTCAAATTGAGATTTTTAACGAAAGCTGATTCATTGAG
TATTACGGAATATAATACAATCTACCAAGTAAAACGCTACATTGAAAATC
AATATGAAATACAACGCGTTGACCAGAAGTTATTATTTAAAGGGAAGGAA
GTGAATGAGAATCAATCAGTATTCAGCTTAATGATGGCCGATCCTAGTCT
ACCCTTGAGTGACGAGTTCGGTTTCGATCTTGTCATCAAAATACCGGTGA
ATTTAAGAGTGGTTTATTTCTATAAAACATGCGACAGGGAGTTTCAAGTA
GAAGTACACGAATCAGACACGGTAGCCGAAGTGAAGGAAAAGATATATGT
GAAAAACAAAATACCTATCCAACATATACACCTCTCAATTCATGGTGAAG
AGGGAGCAAAACTTGATGATGGGGATACCAGAACAATGAAAGAACTTGAT
TTAGGTCCTGAACCGGTATTATGGATGAGACCTGTTATTCTCATTCATCT
GAAGGTTCCTGGGCGAAACTCAAAATGGTCGTTCTATGAAGAACTTACCA
GGTTATCTACACTGGAGAGCATACTAATCAATATCCAAAGAACTCATCGG
TTACAAAGGACCTGGTTAACTGAAATTTATGATAAGCAGGGCAATCAATG
CACACGGAATCTTAATTTGTTCAGCTCGGCAAATACGGATGAAATGTCGA
TAACAGTTTATCCAATCATGGAGCGAAATAAAGATTCGTGTTTTTTAATG
TAGAAACAACTTTTTGTTACCGAGTACAGAATGTACAGAGTTACaaagta
gagtctctttaactcgaacctctataactcgaacctctataactcaaatg
tcgttttatggtcccttcagctaACAATGCCTTAAAAAACATAATCAATT
ACTCGAAATTGCCTTAAATTCGTATTATGGATGAGATGTGGGATACAGTA
TTATAACTTGAACAAGTACGATATCGTAGAGTACTAGAACCATGCTTGTG
TTATTTTAAgttgtgttttatttttaagataaatttcaattttgtaaGGT
ATCAAAgaaagtactttaggcgtacaaactttcgcaagcagaaactttcg
tgaggtcgaaaaatcgcgaaatctaCGACATTTCCTTTCATGaatttgac
aacaaaaaaagaattcgCAAAAGTTGGTAGGTAGGTAGGTATATTTTAAG
TAGAAAATTCAAGTTTTCAATGCAAAAAACTAATGTTTTGATCGTTTAAA
TGTACTCAACCCACATTTGATGGAATTTTGCATAATTTCCACACTAAATT
TTACCCTTGAGGAGAATTGAGTAAATTTCTTTGCAGatttttttcgcgag
cataaactttcgcgaaaagggttaaaattcgcgaaaatcgcgaaagtttc
tgctcgcgaaagtttgtacgcctaaaataGCACTTCAAACTATTGATAAA
AGCCTGTCGAAATATCGTTAAAAGAAAATGTATCttcatgttttgatttt
gtaatatTGTATTTAATTTTGTAACAATTTCATTATGGtatgattttaat
ttatttttcttgtacgAAGCTGTAAACAGTATAAACCAAAAACTTGGaat
attgttgtttttattcCAAACTTAGTAGGATTTAAATATGAAAATCTTTC
CCAATTTTCCTGGGCAC Run BLAST on NCBI protein sequence of TCONS_00013052-protein >TCONS_00013052-protein ID=TCONS_00013052-protein|Name=TCONS_00013052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MNKDLQYELNIGVLNSTTTISIKTIYKRVSSTKESIKFETKIPVFNQVLV
DDNGLIIVHDELIGSSNLHLAVVGDVPPYAESWLEENGVRPIKRFKLRFL
TKADSLSITEYNTIYQVKRYIENQYEIQRVDQKLLFKGKEVNENQSVFSL
MMADPSLPLSDEFGFDLVIKIPVNLRVVYFYKTCDREFQVEVHESDTVAE
VKEKIYVKNKIPIQHIHLSIHGEEGAKLDDGDTRTMKELDLGPEPVLWMR
PVILIHLKVPGRNSKWSFYEELTRLSTLESILINIQRTHRLQRTWLTEIY
DKQGNQCTRNLNLFSSANTDEMSITVYPIMERNKDSCFLM Run BLAST on NCBI transcript from alignment at sc0000161:212022..214088 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013052 ID=TCONS_00013052|Name=TCONS_00013052|organism=Clytia hemisphaerica|type=transcript|length=2067bp|location=Sequence derived from alignment at sc0000161:212022..214088 (Clytia hemisphaerica)
GTGCCCAGGAAAATTGGGAAAGATTTTCATATTTAAATCCTACTAAGTTT
GgaataaaaacaacaatattCCAAGTTTTTGGTTTATACTGTTTACAGCT
TcgtacaagaaaaataaattaaaatcataCCATAATGAAATTGTTACAAA
ATTAAATACAatattacaaaatcaaaacatgaaGATACATTTTCTTTTAA
CGATATTTCGACAGGCTTTTATCAATAGTTTGAAGTGCtattttaggcgt
acaaactttcgcgagcagaaactttcgcgattttcgcgaattttaaccct
tttcgcgaaagtttatgctcgcgaaaaaaatCTGCAAAGAAATTTACTCA
ATTCTCCTCAAGGGTAAAATTTAGTGTGGAAATTATGCAAAATTCCATCA
AATGTGGGTTGAGTACATTTAAACGATCAAAACATTAGTTTTTTGCATTG
AAAACTTGAATTTTCTACTTAAAATATACCTACCTACCTACCAACTTTTG
cgaattctttttttgttgtcaaattCATGAAAGGAAATGTCGtagatttc
gcgatttttcgacctcacgaaagtttctgcttgcgaaagtttgtacgcct
aaagtactttcTTTGATACCttacaaaattgaaatttatcttaaaaataa
aacacaacTTAAAATAACACAAGCATGGTTCTAGTACTCTACGATATCGT
ACTTGTTCAAGTTATAATACTGTATCCCACATCTCATCCATAATACGAAT
TTAAGGCAATTTCGAGTAATTGATTATGTTTTTTAAGGCATTGTtagctg
aagggaccataaaacgacatttgagttatagaggttcgagttatagaggt
tcgagttaaagagactctactttGTAACTCTGTACATTCTGTACTCGGTA
ACAAAAAGTTGTTTCTACATTAAAAAACACGAATCTTTATTTCGCTCCAT
GATTGGATAAACTGTTATCGACATTTCATCCGTATTTGCCGAGCTGAACA
AATTAAGATTCCGTGTGCATTGATTGCCCTGCTTATCATAAATTTCAGTT
AACCAGGTCCTTTGTAACCGATGAGTTCTTTGGATATTGATTAGTATGCT
CTCCAGTGTAGATAACCTGGTAAGTTCTTCATAGAACGACCATTTTGAGT
TTCGCCCAGGAACCTTCAGATGAATGAGAATAACAGGTCTCATCCATAAT
ACCGGTTCAGGACCTAAATCAAGTTCTTTCATTGTTCTGGTATCCCCATC
ATCAAGTTTTGCTCCCTCTTCACCATGAATTGAGAGGTGTATATGTTGGA
TAGGTATTTTGTTTTTCACATATATCTTTTCCTTCACTTCGGCTACCGTG
TCTGATTCGTGTACTTCTACTTGAAACTCCCTGTCGCATGTTTTATAGAA
ATAAACCACTCTTAAATTCACCGGTATTTTGATGACAAGATCGAAACCGA
ACTCGTCACTCAAGGGTAGACTAGGATCGGCCATCATTAAGCTGAATACT
GATTGATTCTCATTCACTTCCTTCCCTTTAAATAATAACTTCTGGTCAAC
GCGTTGTATTTCATATTGATTTTCAATGTAGCGTTTTACTTGGTAGATTG
TATTATATTCCGTAATACTCAATGAATCAGCTTTCGTTAAAAATCTCAAT
TTGAATCTTTTGATTGGTCTTACACCATTCTCTTCTAGCCAGCTTTCAGC
GTAGGGTGGCACATCTCCTACCACTGCTAAGTGCAAATTTGAAGAACCAA
TAAGTTCATCGTGCACTATAATAAGCCCGTTATCATCGACTAGGACTTGG
TTAAAAACAGGGATTTTCGTTTCAAATTTAATAGACTCTTTCGTCGAGCT
AACCCTTTTGTATATTGTTTTTATACTGATTGTTGTCGTCGAGTTCAACA
CTCCAATGTTCAACTCATATTGAAGGTCTTTATTCATGGCTCACCTCTAA
CCAACAATCTTGTTGCTCCCGTTATCAAAAGTTTCTGAAATCGAACACAG
TGTACTTCTTATAAGTGTCCAGGTTTTGTGCTTCATATACAACAAGGAGA
AAAATCCGTTTTCAAAC Coding sequence (CDS) from alignment at sc0000161:212022..214088 >TCONS_00013052 ID=TCONS_00013052|Name=TCONS_00013052|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0000161:212022..214088 (Clytia hemisphaerica)
CTACATTAAAAAACACGAATCTTTATTTCGCTCCATGATTGGATAAACTG
TTATCGACATTTCATCCGTATTTGCCGAGCTGAACAAATTAAGATTCCGT
GTGCATTGATTGCCCTGCTTATCATAAATTTCAGTTAACCAGGTCCTTTG
TAACCGATGAGTTCTTTGGATATTGATTAGTATGCTCTCCAGTGTAGATA
ACCTGGTAAGTTCTTCATAGAACGACCATTTTGAGTTTCGCCCAGGAACC
TTCAGATGAATGAGAATAACAGGTCTCATCCATAATACCGGTTCAGGACC
TAAATCAAGTTCTTTCATTGTTCTGGTATCCCCATCATCAAGTTTTGCTC
CCTCTTCACCATGAATTGAGAGGTGTATATGTTGGATAGGTATTTTGTTT
TTCACATATATCTTTTCCTTCACTTCGGCTACCGTGTCTGATTCGTGTAC
TTCTACTTGAAACTCCCTGTCGCATGTTTTATAGAAATAAACCACTCTTA
AATTCACCGGTATTTTGATGACAAGATCGAAACCGAACTCGTCACTCAAG
GGTAGACTAGGATCGGCCATCATTAAGCTGAATACTGATTGATTCTCATT
CACTTCCTTCCCTTTAAATAATAACTTCTGGTCAACGCGTTGTATTTCAT
ATTGATTTTCAATGTAGCGTTTTACTTGGTAGATTGTATTATATTCCGTA
ATACTCAATGAATCAGCTTTCGTTAAAAATCTCAATTTGAATCTTTTGAT
TGGTCTTACACCATTCTCTTCTAGCCAGCTTTCAGCGTAGGGTGGCACAT
CTCCTACCACTGCTAAGTGCAAATTTGAAGAACCAATAAGTTCATCGTGC
ACTATAATAAGCCCGTTATCATCGACTAGGACTTGGTTAAAAACAGGGAT
TTTCGTTTCAAATTTAATAGACTCTTTCGTCGAGCTAACCCTTTTGTATA
TTGTTTTTATACTGATTGTTGTCGTCGAGTTCAACACTCCAATGTTCAAC
TCATATTGAAGGTCTTTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013052-exon-sc0000161-1491911889:212022..214088 | TCONS_00013052-exon-sc0000161-1491911889:212022..214088 | Clytia hemisphaerica | exon |
| TCONS_00013052-exon-sc0000161-1510915933:212022..214088 | TCONS_00013052-exon-sc0000161-1510915933:212022..214088 | Clytia hemisphaerica | exon |
| TCONS_00013052-exon-sc0000161-1575043694:212022..214088 | TCONS_00013052-exon-sc0000161-1575043694:212022..214088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:212022..214088 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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