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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013059 ID=TCONS_00013059|Name=TCONS_00013059|organism=Clytia hemisphaerica|type=transcript|length=1835bp
GGTACATCAGTTTTCTTGGACATTCTTTTAACAAAATTGGTGAACAGACC
TTACTatgttttaagcgtttttaccACAATTGTTAGTTGGAGACTTTACA
ATGCTAGATATGCTTTATTAGCTGGTAATATACCGCTTTTCACATTTGCT
CACTTTCCAATTACCAATGAAGAAGGTCAGACCAACGGGAAAGCATATGG
TGTGACATTTGGTAAAATCAACCTTCAGCATCTTGGAGAGAGTGTTATAA
AGTTGATCAGAGACTTAAACGTAAAGGAACTTAATATTATCGAAGAAGAA
CATAAATCAATGGAACAGCttgaatttaaatattttctggACCAGAAACT
ATCAGAAATGAATGTTTGTATAACTGCCCGTCTTGATATACCAACAAATA
ACATCACCAAAGATAAATTGAAATCAACAATCATGTTTTCTCACACCTCC
aacatttttcttgttttaaacagTCAAACGGAAAATGCTTTTGGAGAGCT
AGTCCAGTTGGTTAGTGCCTTAAAACCGAACAACGAGACTTTAACTTGGA
TCTCAACAGGAAGTAAAGTTCAAATATCTAATAACCTTACtacaaaaaat
gatttgattatATTCCAAAAGGGCTatttgaaatatctttccaacgaaag
CAAACATCTTACAAAATCGATCATTTTTGATAAGAAGATTCAAGATTTCG
ACCTGTTGACAGATTTGTTAAGTGAAAACGAATTGGACCAGagtttgatt
gacgtttaccCACAGTCCTCGAAAATGAGAGATGTCGAAAAGGTATCTAC
GATTTTCAGCCACTCTTTAAGAGACGCTTTCGAAATTGTGATCAAGAAGT
TGCCGGCTGGTGGGGCATATAAAACTCCTTTTATGAAGCAGAAAAGATTA
TATAGGATTTACAAGCGGATTTCTGATGCGAAATATCCGTATGTCAATTT
AAAACCACGCTTTGTCCGAAATTTAAAAGACAAGTCAATAAACCTGTACA
AAAATACTAATAAAATCCAGAATATTGCTTTGAAAGACACCAGAAAATTT
TGTTTAGGCCCGTGCAGTGCtggaaaggaaaaaattttgcTGAACGACCA
AGTCAAATGTTGTTGGCAATGTCGTCAATGTAGACTAGGTACCATACGCA
CTCTCAATCAAACACATTGCGTGGAATGTCCGAAAAATACAATGTCCAAC
TTTGAGCGGACTGTATGCCTTCCATACAATAGAAAACCGAGAAAATTGTC
TGCAAAAGAAACCCAGGTTTTGATTGCTGGTTCTGTTGCCTGTATGGCgg
tttgtgttttctttttattgattttctacCGAAGACGTTTGACACCTGTC
ATCAAAGCTTCAGATGTCAACCTGTTATTCATCCAACTCACAACACACTT
CATATTATCTACACTGGGGCTATCACAACTACTCCCAGCAAGTAAACTAA
TCTGTTATTCAAGGTTACTCATCTTCGGTTGCATGTGGACAACATCAGCA
GCCATTACATTAGTCAAGGCTCAGAAATATTTATCCATTTTTAACAGTAA
GAGAATCAGAAGGAAAACATCGAAGGATATCCAACAAACTAATTTCCTCA
TCTTCAGCACAATCTCTGTATGCGTTCTGGTGAAAATCTCCTTGATTATT
GTTCTAACGTATTTCAACACGAACGTGTACCAAATAGAACGTGATGACGC
AACCATAACGGAATATTATAGATGTCATCTATACCCTTATAGACAAGGTC
TCTTCGTTTATATTGAGCTTTTACTCATGTTATGTCTGATACAAAGCTAC
AGAGCTAGACATTTACCAACAAACTTCAACGAGAC Run BLAST on NCBI protein sequence of TCONS_00013059-protein >TCONS_00013059-protein ID=TCONS_00013059-protein|Name=TCONS_00013059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp
GTSVFLDILLTKLVNRPYYVLSVFTTIVSWRLYNARYALLAGNIPLFTFA
HFPITNEEGQTNGKAYGVTFGKINLQHLGESVIKLIRDLNVKELNIIEEE
HKSMEQLEFKYFLDQKLSEMNVCITARLDIPTNNITKDKLKSTIMFSHTS
NIFLVLNSQTENAFGELVQLVSALKPNNETLTWISTGSKVQISNNLTTKN
DLIIFQKGYLKYLSNESKHLTKSIIFDKKIQDFDLLTDLLSENELDQSLI
DVYPQSSKMRDVEKVSTIFSHSLRDAFEIVIKKLPAGGAYKTPFMKQKRL
YRIYKRISDAKYPYVNLKPRFVRNLKDKSINLYKNTNKIQNIALKDTRKF
CLGPCSAGKEKILLNDQVKCCWQCRQCRLGTIRTLNQTHCVECPKNTMSN
FERTVCLPYNRKPRKLSAKETQVLIAGSVACMAVCVFFLLIFYRRRLTPV
IKASDVNLLFIQLTTHFILSTLGLSQLLPASKLICYSRLLIFGCMWTTSA
AITLVKAQKYLSIFNSKRIRRKTSKDIQQTNFLIFSTISVCVLVKISLII
VLTYFNTNVYQIERDDATITEYYRCHLYPYRQGLFVYIELLLMLCLIQSY
RARHLPTNFNE Run BLAST on NCBI transcript from alignment at sc0000161:491377..493211 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013059 ID=TCONS_00013059|Name=TCONS_00013059|organism=Clytia hemisphaerica|type=transcript|length=1835bp|location=Sequence derived from alignment at sc0000161:491377..493211 (Clytia hemisphaerica)
GTCTCGTTGAAGTTTGTTGGTAAATGTCTAGCTCTGTAGCTTTGTATCAG
ACATAACATGAGTAAAAGCTCAATATAAACGAAGAGACCTTGTCTATAAG
GGTATAGATGACATCTATAATATTCCGTTATGGTTGCGTCATCACGTTCT
ATTTGGTACACGTTCGTGTTGAAATACGTTAGAACAATAATCAAGGAGAT
TTTCACCAGAACGCATACAGAGATTGTGCTGAAGATGAGGAAATTAGTTT
GTTGGATATCCTTCGATGTTTTCCTTCTGATTCTCTTACTGTTAAAAATG
GATAAATATTTCTGAGCCTTGACTAATGTAATGGCTGCTGATGTTGTCCA
CATGCAACCGAAGATGAGTAACCTTGAATAACAGATTAGTTTACTTGCTG
GGAGTAGTTGTGATAGCCCCAGTGTAGATAATATGAAGTGTGTTGTGAGT
TGGATGAATAACAGGTTGACATCTGAAGCTTTGATGACAGGTGTCAAACG
TCTTCGgtagaaaatcaataaaaagaaaacacaaaccGCCATACAGGCAA
CAGAACCAGCAATCAAAACCTGGGTTTCTTTTGCAGACAATTTTCTCGGT
TTTCTATTGTATGGAAGGCATACAGTCCGCTCAAAGTTGGACATTGTATT
TTTCGGACATTCCACGCAATGTGTTTGATTGAGAGTGCGTATGGTACCTA
GTCTACATTGACGACATTGCCAACAACATTTGACTTGGTCGTTCAgcaaa
attttttcctttccaGCACTGCACGGGCCTAAACAAAATTTTCTGGTGTC
TTTCAAAGCAATATTCTGGATTTTATTAGTATTTTTGTACAGGTTTATTG
ACTTGTCTTTTAAATTTCGGACAAAGCGTGGTTTTAAATTGACATACGGA
TATTTCGCATCAGAAATCCGCTTGTAAATCCTATATAATCTTTTCTGCTT
CATAAAAGGAGTTTTATATGCCCCACCAGCCGGCAACTTCTTGATCACAA
TTTCGAAAGCGTCTCTTAAAGAGTGGCTGAAAATCGTAGATACCTTTTCG
ACATCTCTCATTTTCGAGGACTGTGggtaaacgtcaatcaaactCTGGTC
CAATTCGTTTTCACTTAACAAATCTGTCAACAGGTCGAAATCTTGAATCT
TCTTATCAAAAATGATCGATTTTGTAAGATGTTTGctttcgttggaaaga
tatttcaaatAGCCCTTTTGGAATataatcaaatcattttttgtaGTAAG
GTTATTAGATATTTGAACTTTACTTCCTGTTGAGATCCAAGTTAAAGTCT
CGTTGTTCGGTTTTAAGGCACTAACCAACTGGACTAGCTCTCCAAAAGCA
TTTTCCGTTTGActgtttaaaacaagaaaaatgttGGAGGTGTGAGAAAA
CATGATTGTTGATTTCAATTTATCTTTGGTGATGTTATTTGTTGGTATAT
CAAGACGGGCAGTTATACAAACATTCATTTCTGATAGTTTCTGGTccaga
aaatatttaaattcaaGCTGTTCCATTGATTTATGTTCTTCTTCGATAAT
ATTAAGTTCCTTTACGTTTAAGTCTCTGATCAACTTTATAACACTCTCTC
CAAGATGCTGAAGGTTGATTTTACCAAATGTCACACCATATGCTTTCCCG
TTGGTCTGACCTTCTTCATTGGTAATTGGAAAGTGAGCAAATGTGAAAAG
CGGTATATTACCAGCTAATAAAGCATATCTAGCATTGTAAAGTCTCCAAC
TAACAATTGTggtaaaaacgcttaaaacatAGTAAGGTCTGTTCACCAAT
TTTGTTAAAAGAATGTCCAAGAAAACTGATGTACC Coding sequence (CDS) from alignment at sc0000161:491377..493211 >TCONS_00013059 ID=TCONS_00013059|Name=TCONS_00013059|organism=Clytia hemisphaerica|type=CDS|length=1833bp|location=Sequence derived from alignment at sc0000161:491377..493211 (Clytia hemisphaerica)
CTCGTTGAAGTTTGTTGGTAAATGTCTAGCTCTGTAGCTTTGTATCAGAC
ATAACATGAGTAAAAGCTCAATATAAACGAAGAGACCTTGTCTATAAGGG
TATAGATGACATCTATAATATTCCGTTATGGTTGCGTCATCACGTTCTAT
TTGGTACACGTTCGTGTTGAAATACGTTAGAACAATAATCAAGGAGATTT
TCACCAGAACGCATACAGAGATTGTGCTGAAGATGAGGAAATTAGTTTGT
TGGATATCCTTCGATGTTTTCCTTCTGATTCTCTTACTGTTAAAAATGGA
TAAATATTTCTGAGCCTTGACTAATGTAATGGCTGCTGATGTTGTCCACA
TGCAACCGAAGATGAGTAACCTTGAATAACAGATTAGTTTACTTGCTGGG
AGTAGTTGTGATAGCCCCAGTGTAGATAATATGAAGTGTGTTGTGAGTTG
GATGAATAACAGGTTGACATCTGAAGCTTTGATGACAGGTGTCAAACGTC
TTCGgtagaaaatcaataaaaagaaaacacaaaccGCCATACAGGCAACA
GAACCAGCAATCAAAACCTGGGTTTCTTTTGCAGACAATTTTCTCGGTTT
TCTATTGTATGGAAGGCATACAGTCCGCTCAAAGTTGGACATTGTATTTT
TCGGACATTCCACGCAATGTGTTTGATTGAGAGTGCGTATGGTACCTAGT
CTACATTGACGACATTGCCAACAACATTTGACTTGGTCGTTCAgcaaaat
tttttcctttccaGCACTGCACGGGCCTAAACAAAATTTTCTGGTGTCTT
TCAAAGCAATATTCTGGATTTTATTAGTATTTTTGTACAGGTTTATTGAC
TTGTCTTTTAAATTTCGGACAAAGCGTGGTTTTAAATTGACATACGGATA
TTTCGCATCAGAAATCCGCTTGTAAATCCTATATAATCTTTTCTGCTTCA
TAAAAGGAGTTTTATATGCCCCACCAGCCGGCAACTTCTTGATCACAATT
TCGAAAGCGTCTCTTAAAGAGTGGCTGAAAATCGTAGATACCTTTTCGAC
ATCTCTCATTTTCGAGGACTGTGggtaaacgtcaatcaaactCTGGTCCA
ATTCGTTTTCACTTAACAAATCTGTCAACAGGTCGAAATCTTGAATCTTC
TTATCAAAAATGATCGATTTTGTAAGATGTTTGctttcgttggaaagata
tttcaaatAGCCCTTTTGGAATataatcaaatcattttttgtaGTAAGGT
TATTAGATATTTGAACTTTACTTCCTGTTGAGATCCAAGTTAAAGTCTCG
TTGTTCGGTTTTAAGGCACTAACCAACTGGACTAGCTCTCCAAAAGCATT
TTCCGTTTGActgtttaaaacaagaaaaatgttGGAGGTGTGAGAAAACA
TGATTGTTGATTTCAATTTATCTTTGGTGATGTTATTTGTTGGTATATCA
AGACGGGCAGTTATACAAACATTCATTTCTGATAGTTTCTGGTccagaaa
atatttaaattcaaGCTGTTCCATTGATTTATGTTCTTCTTCGATAATAT
TAAGTTCCTTTACGTTTAAGTCTCTGATCAACTTTATAACACTCTCTCCA
AGATGCTGAAGGTTGATTTTACCAAATGTCACACCATATGCTTTCCCGTT
GGTCTGACCTTCTTCATTGGTAATTGGAAAGTGAGCAAATGTGAAAAGCG
GTATATTACCAGCTAATAAAGCATATCTAGCATTGTAAAGTCTCCAACTA
ACAATTGTggtaaaaacgcttaaaacatAGTAAGGTCTGTTCACCAATTT
TGTTAAAAGAATGTCCAAGAAAACTGATGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013059-exon-sc0000161-1491911889:491377..493211 | TCONS_00013059-exon-sc0000161-1491911889:491377..493211 | Clytia hemisphaerica | exon |
| TCONS_00013059-exon-sc0000161-1510915933:491377..493211 | TCONS_00013059-exon-sc0000161-1510915933:491377..493211 | Clytia hemisphaerica | exon |
| TCONS_00013059-exon-sc0000161-1575043694:491377..493211 | TCONS_00013059-exon-sc0000161-1575043694:491377..493211 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:491377..493211 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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