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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013063 ID=TCONS_00013063|Name=TCONS_00013063|organism=Clytia hemisphaerica|type=transcript|length=1267bp
CTTGGTTTAGAGCCTCGATCAACAATCGgtgtttttggtttgtttttatt
caagTTTGCCAAGTTTTCAGCTAGATTTGGTGAGGATAAAGAACGTTTCA
ATGAAGGTTGTTTTGGAAGGTCCAGAGAATCTGTTGTATAGCGCGAAGTT
GCAGGTACAGTGTTCTTTGGTGCCTGAGGAACGTTTATAGGTGTGGATGG
AGACTGTGTAACCTTTGGTGGTTGAGTGAGAGATGGCGGTTTAGGTTTCA
TCGGGTTTTGAGGTGTTGCCGCTTGGTTGACTGGTGGCGGCGGGTGTTGC
TTTAAGATGGGTTTCGTTGGTTGTTGAGGAGTAACTGGTAGTTGAGATGT
ATTAATTGTTGATTTAGGCTGTTGTGTGATATTTGAAGATGGTTGTGGTG
GGATCAATTGTGAAGGTTGTTTTTGTATAGGTTGGTGTGGCGTGTTCTGT
GGTGGTTGCTGTGGTTGAACTTGCGGCTTTTGTGCTGTTTGAGGAATCAT
ATTTGACTGATCTGGTTTTggagttgttttttttggttgTGTTGAAGCTT
GATTCTGTGGTGTAGGCGGCTTGCTGAGCGCATTTTGTGCTGCTTTGGGT
GTCGCTATTGTGGTTGGGGTGATATTTGAAGTTGCTTTTGGAATGTTCGA
TGAATCTTTCAAATTCTGGTTGGTTGGATCTAATGTTTTCATATTCAATT
GTTTGTTTACTAAATTATTCGAAGCATTGTTTGATTGCAAATCAGGAGGT
ACCCAATGAGTGGTTTTAGTATTATGATCGATATAATAGACTTTGCCTGA
GTTCTGATCAACCTTTTTTACCCAACCGTTTGGCAGTCCCGGTGTCGTGT
CAAGTTTACCAGCTTTTTTATTGGGTGTAATTAAAGTCTCTTTATCATGA
GAAATATTCGGCTCAGCAAAATCAtctttttttatggaattttttgTCTC
TTCAATAGCTTTATTTACAACTGGTTTAGGAGGTTCTTTTTTATCATTAT
CTTGTTCTAAATTAACAAGAGGTTTGTTTGGTTCAATTGGCTTATTTGGT
GTGACTGCCTTCTCTGGTGTTTCTTTATGATCAGTATTGGTACTGGGTGT
TAGTGTCGTTTTACTGTCTCCATTAGGAAGGGAGGGGTAAACAACTTTTT
GGTTAGTAATATTTGCATTGTTTTTATCATTGGATTCTTCTGACAGGATT
CTTCTCATCTTGGTGAGTTTGTCTTCAGGTTCAACCACAGAAGGTTTATT
GACCGTTGTGTTTGGTA Run BLAST on NCBI transcript from alignment at sc0000162:8474..9806+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013063 ID=TCONS_00013063|Name=TCONS_00013063|organism=Clytia hemisphaerica|type=transcript|length=1333bp|location=Sequence derived from alignment at sc0000162:8474..9806+ (Clytia hemisphaerica)
CTTGGTTTAGAGCCTCGATCAACAATCGgtgtttttggtttgtttttatt
caagTTTGCCAAGTTTTCAGCTAGATTTGGTGAGGATAAAGAACGTTTCA
ATGAAGGTTGTTTTGGAAGGTCCAGAGAATCTGTTGTATAGCGCGAAGTT
GCAGGTACAGTGTTCTTTGGTGCCTGAGGAACGTTTATAGGTGTGGATGG
AGACTGTGTAACCTTTGGTGGTTGAGTGAGAGATGGCGGTTTAGGTTTCA
TCGGGTTTTGAGGTGTTGCCGCTTGGTTGACTGGTGGCGGCGGGTGTTGC
TTTAAGATGGGTTTCGTTGGTTGTTGAAGAGTAACTGGTNGGTTGACTGG
TGGCGGCGGGTGTTGCTTTAAGATGGGTTTCGTTGGTTGTTGAGGAGTAA
CTGGTAGTTGAGATGTATTAATTGTTGATTTAGGCTGTTGTGTGATATTT
GAAGATGGTTGTGGTGGGATCAATTGTGAAGGTTGTTTTTGTATAGGTTG
GTGTGGCGTGTTCTGTGGTGGTTGCTGTGGTTGAACTTGCGGCTTTTGTG
CTGTTTGAGGAATCATATTTGACTGATCTGGTTTTggagttgtttttttt
ggttgTGTTGAAGCTTGATTCTGTGGTGTAGGCGGCTTGCTGAGCGCATT
TTGTGCTGCTTTGGGTGTCGCTATTGTGGTTGGGGTGATATTTGAAGTTG
CTTTTGGAATGTTCGATGAATCTTTCAAATTCTGGTTGGTTGGATCTAAT
GTTTTCATATTCAATTGTTTGTTTACTAAATTATTCGAAGCATTGTTTGA
TTGCAAATCAGGAGGTACCCAATGAGTGGTTTTAGTATTATGATCGATAT
AATAGACTTTGCCTGAGTTCTGATCAACCTTTTTTACCCAACCGTTTGGC
AGTCCCGGTGTCGTGTCAAGTTTACCAGCTTTTTTATTGGGTGTAATTAA
AGTCTCTTTATCATGAGAAATATTCGGCTCAGCAAAATCAtcttttttta
tggaattttttgTCTCTTCAATAGCTTTATTTACAACTGGTTTAGGAGGT
TCTTTTTTATCATTATCTTGTTCTAAATTAACAAGAGGTTTGTTTGGTTC
AATTGGCTTATTTGGTGTGACTGCCTTCTCTGGTGTTTCTTTATGATCAG
TATTGGTACTGGGTGTTAGTGTCGTTTTACTGTCTCCATTAGGAAGGGAG
GGGTAAACAACTTTTTGGTTAGTAATATTTGCATTGTTTTTATCATTGGA
TTCTTCTGACAGGATTCTTCTCATCTTGGTGAGTTTGTCTTCAGGTTCAA
CCACAGAAGGTTTATTGACCGTTGTGTTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013063-exon-sc0000162-1491911889:8474..8748 | TCONS_00013063-exon-sc0000162-1491911889:8474..8748 | Clytia hemisphaerica | exon |
| TCONS_00013063-exon-sc0000162-1510915933:8474..8748 | TCONS_00013063-exon-sc0000162-1510915933:8474..8748 | Clytia hemisphaerica | exon |
| TCONS_00013063-exon-sc0000162-1575043694:8474..8748 | TCONS_00013063-exon-sc0000162-1575043694:8474..8748 | Clytia hemisphaerica | exon |
| TCONS_00013063-exon-sc0000162-1491911889:8815..9806 | TCONS_00013063-exon-sc0000162-1491911889:8815..9806 | Clytia hemisphaerica | exon |
| TCONS_00013063-exon-sc0000162-1510915933:8815..9806 | TCONS_00013063-exon-sc0000162-1510915933:8815..9806 | Clytia hemisphaerica | exon |
| TCONS_00013063-exon-sc0000162-1575043694:8815..9806 | TCONS_00013063-exon-sc0000162-1575043694:8815..9806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:8474..9806 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001202 | WW_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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