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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013068 ID=TCONS_00013068|Name=TCONS_00013068|organism=Clytia hemisphaerica|type=transcript|length=2509bp
ctatgtttttttgaaaataagtgAAGTTCCGGCCTGGTTCCTCTATTTAC
AAATTACATCACTTTATTGATCTAGCATCAAaaatgttttggaaatttta
ctaatgaataaaaaagaactgaagaaagttcaatttttggaactaaaaaa
agttacattttcCAACTTGGACAAGACTGTATAAAACTGTTATTATATTA
TAACCAATGATAATATTTTCTACTATTTAGAAACGACACAATTAAAcaac
tttgaataaaaaagatttgaaaagaaaCAATACAAACCAAAGTAAAAATG
GGGTGTGGTTCAAGTAAATCAGCAGTGTCTGTTGTTGAAGATAGCAAAGT
TCCAAAAACCAAAGAAGTTACTGAGGATACGCCAAAAGCACCAAAGAAAA
CCACCAGCTTAGAACATTTCCAAGTCAAAACATCAAAGACTTCATTAAAA
TCTGTAACAAAAACAAGTCGACCTCCATCAACAACTCCTAGTGTCTCATC
AATTATAGAACTaaacaataacaataacaatatttcaaataaaGAATTAC
GGAAAAGTCAGAGATCTTTacaagaactttcaaaaaagccatCAACTGCA
AGTTCATCAAAGAGCGGAGATAGTGgagtttttgatgaaaatgataggAT
ATCCTCTGGAAAGAGTCGCAAGTCTTCCCTGAACTCAGTTCCTACAAAAC
CGCCCTCTGGAAAGAAAAGTTCTGCAAGACAAAGACTTCTTCGTATTGAA
GACCAATCTCTAGAAAATCACCAAGAACAGTTAGAACATATTAAAAATCA
ACAGAACATTTCAAATGGTGATATCAGTATGGTATCGAGACCTAAATCAA
GGTTTGGGAATGTGGCTTTTGATTTGCTGCTTGATGCACCCGAAACTGGA
AACATGAAGAAAAGACCTGATCTCTTACCAGCACTTGAACAGCACAAgaa
gaagaaatcaaagaaagtaaaaacaaaagaagagattgagaaaaaaatgc
aGCAAGTTGAAGAAAGAAGGAAGGTCcaagaaatggaaaaacaaaTGAAA
GCTAAGCAGTTCCAACATCTTGCAGTTCACACAACTGTGGAACCATTTTC
AcccgaaaatgaagatgaagaagaccAACAACGAGAAGTCAAAGAAATGA
ATTCATCGGAGACATAATGTCTTCATCTTTCCAAATATGTTACTGTTTGT
TGGAAACAATGAATTGAATTTAGTAACTTGAAACGGAGTTTGTTTCGCGT
TGGATGTACCATTTGTGAGATATTGGATGAATAAAATAGGTGTGAGTCAA
TGGGAAACCACCatgaatttctttaaaataatgGAATTTTCTATTGACAT
GGTAAGGTGATTACTTAACAAAAGTTTTCATAGGTGTAGACAAATTCAAC
ATCTTAGTCTTATGGGGAATACTCGGATTGGATGGAGGTTGATCTAATCA
TGATTATAAACTTTCCCAAATCTGAATGAGGAAAATTCTCAGCAGCTTTT
AGTTTAAGTCGTCTTTTTACAATTGGTCTGTATGAATTATTTTAAGAAGC
TGTTGCTAAAAAGTGTTTTGGACGGGCAATGTTTTATCGTTGAATAGTAT
TTATTTAACGGAGATGTAAATATGTAATGTTTTTATTACCTTAATATAAT
GTTTGCTACTAGAATGTTTTTATATACATACTTTTCAGAAGGTTGATAAA
GTTACATTATGCTTACCCAAAGAGCCTGTTGGCCATCTATGACATTTTTA
ATATATAACATTAGTCCAGGTGGGATTTAATTTTGTGTGTAGAAAAGGAG
TATCGTTAATTTCACAATTCTGGATTGATACTTTTCAATTTATGTATATA
AATAAAAATCTTGATTAAAGAAGGAAACTGCGATGCTATTTTCCTGGCAT
CTTGGGGATCATTTACCCCTTGTCTGTACATGAacataaaaattgaaaca
gcCTCAACAATACAGGAGTCCTCATTTTACATAAAGAGTGTTTAgtgtgt
tttattttaatattgaaattacAAATACATATATTAtctattttttgtaa
ataaataattgatttttagggaatattaatttttaaagacttattttttt
agaaacaaaaatgatcaaatattatgtaaaattttttttcaaaaacttat
tacctcgattctttaaaatttgataaattattANatttcagcctgtacgt
ttattaattccaattttattctcttccctgtacgtttattttggtctgta
cgtttattaggcacccgagagtagctGTATAAACCTAGACTTTCAAATAA
TATATAGGTGAAACGTATCAATCATCTACACATCAGTGGTAAGCTGTTGT
CTTTGAGGTTCACNcagaatcaaaattatttgatCGCGGAAATGTTTGAT
TGGCCAAGATCAGGTTTGTAATGAacttactctcgggtgcctaataaacg
tacatgtacgtttatttttttcgtatcaaatttcccgcctgtacgcacct
tattaggaa Run BLAST on NCBI transcript from alignment at sc0000162:42608..45649+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013068 ID=TCONS_00013068|Name=TCONS_00013068|organism=Clytia hemisphaerica|type=transcript|length=3042bp|location=Sequence derived from alignment at sc0000162:42608..45649+ (Clytia hemisphaerica)
ctatgtttttttgaaaataagtgAAGTTCCGGCCTGGTTCCTCTATTTAC
AAATTACATCACTTTATTGATCTAGCATCAAaaatgttttggaaatttta
ctaatgaataaaaaagaactgaagaaagttcaatttttggaactaaaaaa
agttacattttcCAACTTGGACAAGACTGTATAAAACTGTTATTATATTA
TAACCAATGATAATATTTTCTACTATTTAGAAACGACACAATTAAAcaac
tttgaataaaaaagatttgaaaagaaaCAATACAAACCAAAGTAAAAATG
GGGTGTGGTTCAAGTAAATCAGCAGTGTCTGTTGTTGAAGATAGCAAAGT
TCCAAAAACCAAAGAAGTTACTGAGGATACGCCAAAAGCACCAAAGAAAA
CCACCAGCTTAGAACATTTCCAAGTCAAAACATCAAAGACTTCATTAAAA
TCTGTAACAAAAACAAGTCGACCTCCATCAACAACTCCTAGTGTCTCATC
AATTATAGAACTaaacaataacaataacaatatttcaaataaaGAATTAC
GGAAAAGTCAGAGATCTTTacaagaactttcaaaaaagccatCAACTGCA
AGTTCATCAAAGAGCGGAGATAGTGgagtttttgatgaaaatgataggAT
ATCCTCTGGAAAGAGTCGCAAGTCTTCCCTGAACTCAGGTATGGAAACAA
ACCAAATCTAAAAATACAACTGCCAACTGTTTAAACAAGAGACttaaaat
taaagtttaaagctttagaaaaaggctttttgtaatatttgaaaatgatc
TTACAGTGATAAGGCACAagtctaaaaataattttccattTCAACCTCTT
AGTTCCTACAAAACCGCCCTCTGGAAAGAAAAGTTCTGCAAGACAAAGAC
TTCTTCGTATTGAAGACCAATCTCTAGAAAATCACCAAGAACAGTTAGAA
CATATTAAAAATCAACAGAACATTTCAAATGGTGATATCAGTATGGTATC
GAGACCTAAATCAAGGTTTGGGAATGTGGCTTTTGATTTGCTGCTTGATG
CACCCGAAACTGGAAACATGAAGAAAAGACCTGATCTCTTACCAGCACTT
GAACAGCACAAgaagaagaaatcaaagaaagtaaaaacaaaagaagagat
tgagaaaaaaatgcaGCAAGTTGAAGAAAGAAGGAAGGTTCGTAAACACC
ATTTCATCATTTCCCTTTGTTTTTCATCAAGTTGTCTTGGAAAAGTCTTG
CTTCATGTTTCCCTATGCTTAGTTCTTCTTTTAGCACTTTCAGGTTAACT
CTTTTTTTAAGAGAAAAATATTAGAAGAGCAactaaaaatgctgaaaaaa
agaATACTGCTGACCCTAATGACTGAATTTTAGGCAAATTGATGATGATT
AAAGTAGTGAAAGTAGGATACAATGCCTGTGATGTCTCAATATTGCACTA
AAATAAGAACACAGAACATGATTTGAGTTTCATCAAGGTGCCAATAAAGA
AGAACTGTCGGACCTCAACAAATATACTTATCTTTTTGCACACTTATTTT
CTTCAGGTCcaagaaatggaaaaacaaaTGAAAGCTAAGCAGTTCCAACA
TCTTGCAGTTCACACAACTGTGGAACCATTTTCAcccgaaaatgaagatg
aagaagaccAACAACGAGAAGTCAAAGAAATGAATTCATCGGAGACATAA
TGTCTTCATCTTTCCAAATATGTTACTGTTTGTTGGAAACAATGAATTGA
ATTTAGTAACTTGAAACGGAGTTTGTTTCGCGTTGGATGTACCATTTGTG
AGATATTGGATGAATAAAATAGGTGTGAGTCAATGGGAAACCACCatgaa
tttctttaaaataatgGAATTTTCTATTGACATGGTAAGGTGATTACTTA
ACAAAAGTTTTCATAGGTGTAGACAAATTCAACATCTTAGTCTTATGGGG
AATACTCGGATTGGATGGAGGTTGATCTAATCATGATTATAAACTTTCCC
AAATCTGAATGAGGAAAATTCTCAGCAGCTTTTAGTTTAAGTCGTCTTTT
TACAATTGGTCTGTATGAATTATTTTAAGAAGCTGTTGCTAAAAAGTGTT
TTGGACGGGCAATGTTTTATCGTTGAATAGTATTTATTTAACGGAGATGT
AAATATGTAATGTTTTTATTACCTTAATATAATGTTTGCTACTAGAATGT
TTTTATATACATACTTTTCAGAAGGTTGATAAAGTTACATTATGCTTACC
CAAAGAGCCTGTTGGCCATCTATGACATTTTTAATATATAACATTAGTCC
AGGTGGGATTTAATTTTGTGTGTAGAAAAGGAGTATCGTTAATTTCACAA
TTCTGGATTGATACTTTTCAATTTATGTATATAAATAAAAATCTTGATTA
AAGAAGGAAACTGCGATGCTATTTTCCTGGCATCTTGGGGATCATTTACC
CCTTGTCTGTACATGAacataaaaattgaaacagcCTCAACAATACAGGA
GTCCTCATTTTACATAAAGAGTGTTTAgtgtgttttattttaatattgaa
attacAAATACATATATTAtctattttttgtaaataaataattgattttt
agggaatattaatttttaaagacttatttttttagaaacaaaaatgatca
aatattatgtaaaattttttttcaaaaacttattacctcgattctttaaa
atttgataaattattANatttcagcctgtacgtttattaattccaatttt
attctcttccctgtacgtttattttggtctgtacgtttattaggcacccg
agagtagctGTATAAACCTAGACTTTCAAATAATATATAGGTGAAACGTA
TCAATCATCTACACATCAGTGGTAAGCTGTTGTCTTTGAGGTTCACNcag
aatcaaaattatttgatCGCGGAAATGTTTGATTGGCCAAGATCAGGTTT
GTAATGAacttactctcgggtgcctaataaacgtacatgtacgtttattt
ttttcgtatcaaatttcccgcctgtacgcaccttattaggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013068-exon-sc0000162-1491911889:42608..43295 | TCONS_00013068-exon-sc0000162-1491911889:42608..43295 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1510915933:42608..43295 | TCONS_00013068-exon-sc0000162-1510915933:42608..43295 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1575043694:42608..43295 | TCONS_00013068-exon-sc0000162-1575043694:42608..43295 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1491911889:43460..43794 | TCONS_00013068-exon-sc0000162-1491911889:43460..43794 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1510915933:43460..43794 | TCONS_00013068-exon-sc0000162-1510915933:43460..43794 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1575043694:43460..43794 | TCONS_00013068-exon-sc0000162-1575043694:43460..43794 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1491911889:44164..45649 | TCONS_00013068-exon-sc0000162-1491911889:44164..45649 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1510915933:44164..45649 | TCONS_00013068-exon-sc0000162-1510915933:44164..45649 | Clytia hemisphaerica | exon |
| TCONS_00013068-exon-sc0000162-1575043694:44164..45649 | TCONS_00013068-exon-sc0000162-1575043694:44164..45649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:42608..45649 + |
Blast
The following BLAST results are available for this feature:
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