TCONS_00013078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013078
Unique NameTCONS_00013078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013078 ID=TCONS_00013078|Name=TCONS_00013078|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATCA
CCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTGAGCGTCGAATCAA
CTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGATGGTCAATGG
GTAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCATCTTTGTTC
AACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGATGACCCTGA
ACGAGAAGACGGTGATGGTGGTCGAGTTGAATTGGAATTGGAGTTGTTAA
CGAAAGAAGAAGCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCT
CATGCTCTCTCAAAACCTAAACGCCCTCAAGAGAGTATGCGGTTATTGAT
CGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTCACATCGTGGTCTTA
TTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTCTGATGCTCCTCTTT
CTATACGCCATGCCTGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTG
AGGTACTTGATAAGAAAATGTCGAAATATAGAATGGATGAAACTAAAAGA
ACTTAATAAATGGATCATTCTTTCTCTTGGATTTCCTCTACAAGTTACTC
AGTCCaacaaaaatacaaacaaacaaattgtTTCCCATGGAAATCGAGAT
ACGAGAACATTTCTGAAACATTACTTCCTTTATCTTAACTCATCCTTTGG
TTGAGTTATGTAACGCCAATTTTCACGTATTATGAATGTCGTTTCAACAT
TCATTCCTGAACATTGGGTAGATATCTCGACTTTCAATCTTGTAGCTTGT
TAAGAGCGGAAATTAAAGTAATTAGGGTAGGAGATTGCGTTTTAATTGGC
CACCTAGAGTTGTTTTTGTAATTCGTAAATGCATTCTATTTATTCTTCAT
TATAGATAAATGTCGGGTTTTATTGCAAGTATTTATCTCGATTAGTGCAT
GAATTTAATCAAGGCTTTGTTATGGTAATTTGTTGACCAAGCATCAAAGA
GCAAAAAGAAAATGTACTAACGAGACATCAGACTGTGTCAATATAGTTCC
CTGTAACTTATCAATCATGCCTCCTCCCCCTGTACTGATCCTTACAAAGA
CTACCTCAGCTGAGCTCAGTTGATCTATGTCATTTTGACGCTCTTTGTCA
ATTATGGGGTGTAATCTAACAAAACGGcgcaaattttaaaagaatttaaa
accaATTAGATTTTTGATGAACGAACGAatgtatatttttgaattttttc
ctttaaacCTACATACTAAAATACTATTTATAAATTATTTACAAATGAAA
TgtcatatatatatattttgaatGCATTGTTTATTGTATATTTTATATGA
TTTTTACGGGGAAATCACGAGTCATTAAACCAACCAGGATTCGCTTccag
taaaaaaataatttatataggggtcattttgaaatagaaagttttttaaa
aatatttttgtactaTATCTTGAGGGTTGATTTGGTGTTGGACGTGTGTA
TATGTATTTGGATGACCATATATTGACcctaaaaaatgaaacaaaataat
tgaatatGAATTATTAA
Run BLAST on NCBI

transcript from alignment at sc0000162:104968..109062+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013078 ID=TCONS_00013078|Name=TCONS_00013078|organism=Clytia hemisphaerica|type=transcript|length=4095bp|location=Sequence derived from alignment at sc0000162:104968..109062+ (Clytia hemisphaerica)
GACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATCA
CCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTCAGTTGAAAGTTCC
TTTGTTCGTTTTTTCATTTAGGTCTGCTCGTCTTCTTTTAATCAAAGGGT
CTGCGTTATCAATATATTGCCAATTGGTAAATACTAATGGTAGACGAATA
GACTCTCATCTTTATCAGTTTCTCGGTGCAACCTGATATAAAAGTTCGAA
TaatgttggaaaattttcaaaattttaataaacggggggaccaaATTTCC
GGAGGGGttagaaattgtacttctgaaaacccaaaataaggtaaatatag
gctaaaatcaggttaTTTAGAGctaaataaggggccttctctttggcagc
tgaaaatattcttgaaaatttataaacaGGGGGTGTcctaattttcgaaa
aattaacaagcagggggcccgtttatttggaacctaagagaaGCTTTTag
tactttaagggcagaaactttcgtgggcagaaactttcgcactttcgcgt
ttttcgcgattttgatcctttttcgagaaagtttctgccaggtaagaaat
taaacctgaaaaacgcgaaagtttttttcgcgaaaaataaactttcctac
tcagttttgcactgtttgctaaatttttgcgtgtttttgttaccaaaaaa
ggtaaattttatatgaattcgcgaaagttctatctgtaaaatttcggcta
aaaccataattcgcgaaacttaaattcgctaaatttcgcgactttttgac
ttcgcgaaactttctgcccgtgaaactttctgcccttaaagtatcaGTAC
TTATTTCAATGTTTATTCTTTTGCAGAACGTAGCATTTGAAAAGACAGCT
CTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGACCTTTT
CTCACACGATGTTCTAGGTATGTATTGTACGGGATTCgaagatttgaaaa
ctttttaaaaaaaagaaaagtttaaatTACATAGACATAGTTGTGAAGCT
ACGAAGAGTTATTATTGTTAATACTTTCTACTCACAATACTTTACCGGTA
GATAATTCGTTGGTGAAAAATATTCGCCGGTTAAAAATATTCGTCTGtca
aaaattccgtcaccgagcgatttttttgtcattttctacCGAAGAATTTC
TTACCGAAAAAGgtatatttttaataaaatttctaaccGTAGGTGAGCGT
CGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGATG
GTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCAT
CTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGAT
GACCCTGAACGAGAAGACGGTGATGGTGTAAGTGCCCAGCTGGtgcacaa
tgttgtttcaacgttcatcgaATATTCACAACGTCAATATAACGTtggat
gaacattgaaacaacgtcttgtgccagctgggtgggATTTTGAACGTGTC
TCTTACAAGATATTTTACACGAATGGCTAAAAGAAATCCAGTCATAAGAT
ATATGTGGGCCCAGTCCATTCGCTTTATGCGAGCGCTATTTTATGTTATC
ACGTGTGAACCATGTAAGCATCATTTGACTAATCTCCATTGTAGTGGTTT
CCACATGGAATATCAGAAAAGTGCTCACTTAAGGCGAATGGACTTTAGGC
TTGAAAAAGGGAATATGTAAAACTTTAAAGGAGTGGGCGGTCAAGACTTA
TCAATGAGAATAAGTGAATTCAatatattgatttgattttcttttgtagG
GTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGAG
AACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTAA
GTAAGTTCGCTAATCACTAGCTCTGCTGGTTTAACTCACCAAGTGCCTTA
ACACACTGTTGATTTGGCTCTTTCTAGGAGGTGTTAGATTTGGGGAAGCC
TGAGAGTAATATTTTGCGTTGTCACATCATCTCAACACCGGACGATATGT
TACATGACATGGAATCTCGTTTATGACATTAATTGGTTTGTTGATCATCC
AAGTTGATCGTTAAAATTCTTCTAGTTGACTTTTTGACTTATTGGTTAAC
TTACCGTTGTTGGATATTGTTGATTGTAGGATTATCCCTTCATAAAGGAA
ATATAAATTGTAGATCTGATGAGTACCTGTAAATAATTCCAAATCAGAAG
CTCGAAATCACAATTTTCTCCTTCCTTTTTTAGACGCCCTCAAGAGAGTA
TGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTCA
CATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTCT
GATGCTCCTCTTTCTATACGCCATGCCTGTGAGTAGACTTCTGTgaggat
tttgaattttatgagGATAGACATCCTTGTCTCTTTGAGGAAGCTCAATT
CTGAATGGGAATAGAAACCACCTGTTTTAATGGTAGGGATTTCAAATTCT
ATTCTACTTGTTATTGATGTTCAAAAATCTATCCTTTGAGAGGGGTCCCA
GCCGGTCTGTGGCACGGGttgtataagaaaatttttcgccagaaattgaa
attttttacgTACCGAAATTCTCTCTGTCATTTCAACATGACTATTTGCC
TAATTTAGAGTGAATTTTCTTCGCCTTTTGATTTCATCAGATATTTCATT
GATCAATTTTATTATTGGGTATGTGATGTGTGTCAATATAAGTAAGGAAT
CTCGAGTAGCATTTTGTCCATTCCACTTGCGGATGGAGAAGGTTTcgtaa
tttttctttctaataTCGAGTTCGATGTCCTGTTTTATCTATTCCCCGAA
TGCGTGCATTACCTCAAATTTCTCTTCATTTTCGTAATCATAGGGAGCTG
CTGTCCAAAAGATGTTTGGTGCTCGTTGAGGTACTTGATAAGAAAATGTC
GAAATATAGAATGGATGAAACTAAAAGAACTTAATAAATGGATCATTCTT
TCTCTTGGATTTCCTCTACAAGTTACTCAGTCCaacaaaaatacaaacaa
acaaattgtTTCCCATGGAAATCGAGATACGAGAACATTTCTGAAACATT
ACTTCCTTTATCTTAACTCATCCTTTGGTTGAGTTATGTAACGCCAATTT
TCACGTATTATGAATGTCGTTTCAACATTCATTCCTGAACATTGGGTAGA
TATCTCGACTTTCAATCTTGTAGCTTGTTAAGAGCGGAAATTAAAGTAAT
TAGGGTAGGAGATTGCGTTTTAATTGGCCACCTAGAGTTGTTTTTGTAAT
TCGTAAATGCATTCTATTTATTCTTCATTATAGATAAATGTCGGGTTTTA
TTGCAAGTATTTATCTCGATTAGTGCATGAATTTAATCAAGGCTTTGTTA
TGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAGAAAATGTACTAACG
AGACATCAGACTGTGTCAATATAGTTCCCTGTAACTTATCAATCATGCCT
CCTCCCCCTGTACTGATCCTTACAAAGACTACCTCAGCTGAGCTCAGTTG
ATCTATGTCATTTTGACGCTCTTTGTCAATTATGGGGTGTAATCTAACAA
AACGGcgcaaattttaaaagaatttaaaaccaATTAGATTTTTGATGAAC
GAACGAatgtatatttttgaattttttcctttaaacCTACATACTAAAAT
ACTATTTATAAATTATTTACAAATGAAATgtcatatatatatattttgaa
tGCATTGTTTATTGTATATTTTATATGATTTTTACGGGGAAATCACGAGT
CATTAAACCAACCAGGATTCGCTTccagtaaaaaaataatttatataggg
gtcattttgaaatagaaagttttttaaaaatatttttgtactaTATCTTG
AGGGTTGATTTGGTGTTGGACGTGTGTATATGTATTTGGATGACCATATA
TTGACcctaaaaaatgaaacaaaataattgaatatGAATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007321XLOC_007321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013078-exon-sc0000162-1491911889:104968..105051TCONS_00013078-exon-sc0000162-1491911889:104968..105051Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1510915933:104968..105051TCONS_00013078-exon-sc0000162-1510915933:104968..105051Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1575043694:104968..105051TCONS_00013078-exon-sc0000162-1575043694:104968..105051Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1491911889:106210..106394TCONS_00013078-exon-sc0000162-1491911889:106210..106394Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1510915933:106210..106394TCONS_00013078-exon-sc0000162-1510915933:106210..106394Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1575043694:106210..106394TCONS_00013078-exon-sc0000162-1575043694:106210..106394Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1491911889:106817..106917TCONS_00013078-exon-sc0000162-1491911889:106817..106917Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1510915933:106817..106917TCONS_00013078-exon-sc0000162-1510915933:106817..106917Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1575043694:106817..106917TCONS_00013078-exon-sc0000162-1575043694:106817..106917Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1491911889:107301..107445TCONS_00013078-exon-sc0000162-1491911889:107301..107445Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1510915933:107301..107445TCONS_00013078-exon-sc0000162-1510915933:107301..107445Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1575043694:107301..107445TCONS_00013078-exon-sc0000162-1575043694:107301..107445Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1491911889:107961..109062TCONS_00013078-exon-sc0000162-1491911889:107961..109062Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1510915933:107961..109062TCONS_00013078-exon-sc0000162-1510915933:107961..109062Clytia hemisphaericaexon
TCONS_00013078-exon-sc0000162-1575043694:107961..109062TCONS_00013078-exon-sc0000162-1575043694:107961..109062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:104968..109062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0143194	0.181113	0	0	0	0	0	0.000123326	0	1.86951	0.0488304	0	0.759071	0	0	0.0714521	0.385121	0	0.221143	0.219265	0	0	2.67906e-07	0	0	0	0.667669	0.100625	0.630526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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