TCONS_00013096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013096
Unique NameTCONS_00013096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013096 ID=TCONS_00013096|Name=TCONS_00013096|organism=Clytia hemisphaerica|type=transcript|length=2903bp
CTCGAGTTATGATAATATATGATAGATATTTCATATATATGCAAGCTgac
aaaacaataacaattttACCTCGAAATTGGATATATGTCCCCTAAAAATA
ATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaac
aataaaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTGA
AAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGCA
AGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGCT
TGTACAGTGGGGCCGGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTGA
ATTTGATTTGAACTTGATTTGGGCGTTGATTTTTGCTTCCATTCTCTCAT
ATACTTTGCAAGAAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAGC
CTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGGG
CGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGAAACA
CTTTTTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCA
CTACCCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGG
GTATGGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCAC
TTGGAGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTG
GTAGTTGTCGTTAAACTAGGTTTAGATGGTGCACGATTCGCTAAAGGATT
GCTGCCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGCTTGG
TAGGAACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGATGGCA
GAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAACAGT
AATGACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGTACAG
AGTTACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGTAGAA
AATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCATTGC
AGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATGACTT
GTGAAAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGCAATG
GAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAGAAGG
GGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTTCCCA
AGAAATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGTGATT
GTGAACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTCAAGT
GTTCAATGGTTGTCTTCTCCCCTTCTTTTCTATCTGTCTATTGATCTGTT
TGAACGATCCACAATTTATGGCATCTGCTCCACAAAAAGGATGGTCCAAT
TGCTTCCTCACTACTGCTGTCATTATAACTTTGTTCCTGACCGCAAATTC
CATGATTCAAAACCTCTTCGGATGGACTACAACTAATGGTCATATCTTGA
AATCCACATTTGACACCatcaaatttagtttttctggAGTGATTGCGGTG
GCGATTAtgctttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTG
CAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGA
TGATGATGGTGAATTTTATTAGTAACACTATAGAACCCCCTCTAATATAT
CTATACATGACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTA
AAACCTACAATGGCGCAAAGAGCGACAAATACCACGAGCGAAAAACCCAC
GTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAAC
TCATTATTTTACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTC
TTTGTCGAATCGATAAATACTAAAagtatttttgtttacttaaatTTTGT
TCCAATATTTCCCCTAACCCTATAGACACACAAAGATagaattttaagaa
agaaatccttaatttttaaaattgcattttcgattttcatttttaagctC
AATGGCCTATACTTTAGACGTAAACAATAAGAGTCATAGGAAAAATATCT
AGCTCATTCATAAATTCTCTagataaatacaaaaatatacaaaaaacaaa
tataaacctTCCTTTTTGATGACCATCCCACCCTTTTTTCGGGAAATGTA
CGTACCCTAGTAAAACATTTTTCAGCGCTGGCATTTAGTTAAATTTTCAG
TGAAATAAGTCTTTTGAGAGTCTTTTAATGGCCAATANcaaatttagttt
ttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTA
GTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAA
GACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTAT
AGAACCCCCTTTAATGTATCTATACATGACAAAAGAAATACAAATTATCC
TCGACTCTGGTAGTCATTAAAACCTACAATGGCGCGAAGAGCGACAAATA
CCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTT
AAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGA
ACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtattt
ttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACAC
AAAGATagaattttaagaaagaaatccttaatttttaaaattgcattttc
gat
Run BLAST on NCBI

transcript from alignment at sc0000162:265633..270834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013096 ID=TCONS_00013096|Name=TCONS_00013096|organism=Clytia hemisphaerica|type=transcript|length=5202bp|location=Sequence derived from alignment at sc0000162:265633..270834+ (Clytia hemisphaerica)
CTCGAGTTATGATAATATATGATAGATATTTCATATATATGCAAGCTgac
aaaacaataacaattttACCTCGAAATTGGATATATGTCCCCTAAAAATA
ATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaac
aataaaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTGA
AAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGCA
AGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGCT
TGTACAGTGGGGCCGGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTGA
ATTTGATTTGAACTTGATTTGGGCGTTGATTTTTGCTTCCATTCTCTCAT
ATACTTTGCAAGAAGGTAAAGAATTTGAGCACAGACAGAAATGATGAACG
TCGTTTTACAGAAACACATTTTCTTTTCCATCGtctattctattctattt
aGGGTGGAGTTATAACCATGCCAACCCTCTTAGCTTTCATTACACTCGGA
ACATTGACAAGTTACTTGTTAACTTTGCTAACTTATCTGTACGTAATATC
ATTATCCACCATTAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAGC
CTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGGG
CGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGTAAGT
TGCCTCAAAAAATGTTTAGCNCTAAAAATAATACTGCGGCGGAGAAGTAC
TTATGAAGTGGCGATTGAAATAtggaaaacaataaaaatagaaGCAATCC
TACAGAGGGTCAACAGCTTTTACAGACTGAAAACTGCAACAGAGGGGAGA
GTCATACACGCAGCAAAATGAGGAATAGCAAGATTTTCAAAGAGATTGTG
AGCCTTCTATACTGGACCATGTTGGCGGCTTGTACAGTGGGGCCCGGAAC
CGTAGTCACTTGCGCAAGGGCCGGTGCTGAATTTGATTTGAACTTGATTT
GGGCGTTGATTTTCGCTTCCATTCTCTCATATACTTTGCAGGAAGGTAAA
GAATTTGAGCATGGACAAAAATGATAAACGTTATTTAACCTAAACACGTT
TCTTTTACATCATCTATTCTATTCAATTTAGGGTGGAGTAATAACCATGC
CAACCTCTTAGCTTTCGTTACACTCGGAACATTGACAAGTTACTTGTTAA
CTTTGCTAACTTTTATCTGTACGTAATATCATTATCCACCTTTAGGTACA
GCAAGACTGACAATAAAAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGC
AAAATATAAACATGGTCGACTGATATGGGGCGTGGGCGTTATTTGCTGGG
TGGTGGCGGTCTGTGTATTTCTTGGTAAGTTGCCTCAAAAAATGTTTAGC
CACCTCGGTTTAAAGCtcattcgattgacaaaaagGCAAAAAGTCATTGC
ACTATTTCAATTATttatttcaattcatttttcTCCAGTTCCCGATTTGT
TCTGTTCTTGTTCAATTCCTCAGCCTGTCTAAAAGCTGCTGATTTTCTTT
TCCTTCATACTATAGGAAACACTTTTTATTCATGCAACAACTGGGCAGGT
GGCATGTCCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCGGACT
ACGTGTTGGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATTTCAT
TGGCTGATAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTATGATT
GCCATGGTGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTAAATTTTA
TTATCTCATGTTACAAGCCTTGAGAAGAGATTATAATTCAAAACAGCTAA
TTGGAAGACACTTTTTGTCCTTTAACTATTATTCTTTGCCAAATCATGAC
TCATAGATTAATTATGTATGTGCAGTAAACAATAACCTTCTAGCAAGTTA
AACCTTGATGCTTGTTTCCCCTCCAAATCTTATTACTTGCTAACACACTT
TCCGTGGTGAAGCATAAACAATTACATTACATGAAAACATGGTTCTTAAT
TTTgatgacaaaaattctttctATACCACATTATANAAGGCAAAAAGTCA
TTGCACTATTTCAATTATttatttcaattcatttttcTCCAGTTCCCGAT
TTGTTCTGTTCTTGTTCAATTCCTCAGCCTGTCTAAAAGCTGCTGATTTT
CTTTTCCTTCATACTATAGGAAACACTTTTTATTCATGCAACAACTGGGC
AGGTGGCATGTCCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCG
GACTACGTGTTGGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATT
TCATTGGCTGATAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTAT
GATTGCCATGGTGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTAAAT
TTTATTATCTCATGTTACAAGCCTTGAGAAGAGATTATAATTCAAAACAG
CTAATTGGAAGACACTTTTTGTCCTTTAACTATTATTCTTTGCCAAATCA
TGACTCATAGATTAATTATGTATGTGCAGTAAACAATAACCTTCTAGCAA
GTTAAACCTTGATGCTTGTTTCCCCTCCAAATCTTATTACTTGCTAACAC
ACTTTCCGTGGTGAAGCATAAACAATTACATTACATGAAAACATGGTTCT
TAATTTTgatgacaaaaattctttctATACCACATTATATCATTTCCATA
GGTTTAGATGGTGCACGATTCGCTAAAGGATTGCTGCCGATCAGTATGCC
AGCAGGATCCACCAACATTGTTTTAAGCTTGGTAGGAACAACTGCTATCG
GCTTCAACCTATTCTTAGGTGGACAGATGGCAGAAGGGAAAACGCTTCCA
CAAGCACAAAGAGGGATTGCATTTTCAACAGTAATGACTCTGATTGTGTC
AGTCTTAATCATGATTGTTGGAGATGGTACAGAGTTACAGAAAGGGTTAT
TCACCATCGCCAACTTGTCTGGTACTGTAGAAAATCTGACTGGAGGTGCT
GGTCTTTGGATATTTTGTCTGGGCTTCATTGCAGCCGCTTTAAGTTCCAT
GTTAGTGTGCCCGTTAGGATCAGTGATGACTTGTGAAAGCGTTTTCAATA
TTTATGCGGAAAATGACGAGCAGTCGGCAATGGAGTATAAGAGCACTGGA
GAGAAGGAACAGGATCAAGGTACAAAAGAAGGGGAGCAAGTTATTCAAAT
CCAAAGTGAAGGCCAAGAAAGATTGTTTCCCAAGAAATATGCACGTGCTT
TGATGGTCATAATGGTATCCGTAGCTGTGATTGTGAACGCTGCAAATGCA
CCACCTGTTAAAGTCATCTTGGTCGCTCAAGTAAggctttttcttatttt
tctaaactAATTTTGACACAAGGCATACGTACTGATAGCTTCTAAGATCT
TAATAAGGCCATCAGgtgttaaattttgaaaataataaaaacctACTTAC
TTGAAAACGTTCTCCAACAACTGATTTGTGCGTCAACCTGAAGTAAGAAA
TAAGCTGGAAAATTATCTTATCTACACTAAGCAACTGAAGTTTATATAAT
GTTCATGGATTTTTTCATTAATTGAAGTACCTTTGAATCTAATTTAGGTG
TTCAATGGTTGTCTTCTCCCCTTCTTTTCTATCTGTCTATTGATCTGTTT
GAACGATCCACAATTTATGGCATCTGCTCCACAAAAAGGATGGTCCAATT
GCTTCCTCACTACTGCTGTCATTATAACTTTGTTCCTGACCGCAAATTCC
ATGATTCAAAACCTCTTCGGATGGACTACAACTAATGGTCATATCTTGAA
ATCCACATTTGACACCatcaaatttagtttttctggAGTGATTGCGGTGG
CGATTAtgctttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGC
AAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGAT
GATGATGGTGAATTTTATTAGTAACACTATAGAACCCCCTCTAATATATC
TATACATGACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAA
AACCTACAATGGCGCAAAGAGCGACAAATACCACGAGCGAAAAACCCACG
TGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACT
CATTATTTTACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCT
TTGTCGAATCGATAAATACTAAAagtatttttgtttacttaaatTTTGTT
CCAATATTTCCCCTAACCCTATAGACACACAAAGATagaattttaagaaa
gaaatccttaatttttaaaattgcattttcgattttcatttttaagctCA
ATGGCCTATACTTTAGACGTAAACAATAAGAGTCATAGGAAAAATATCTA
GCTCATTCATAAATTCTCTagataaatacaaaaatatacaaaaaacaaat
ataaacctTCCTTTTTGATGACCATCCCACCCTTTTTTCGGGAAATGTAC
GTACCCTAGTAAAACATTTTTCAGCGCTGGCATTTAGTTAAATTTTCAGT
GAAATAAGTCTTTTGAGAGTCTTTTAATGGCCAATANcaaatttagtttt
tctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTAG
TCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAG
ACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTATA
GAACCCCCTTTAATGTATCTATACATGACAAAAGAAATACAAATTATCCT
CGACTCTGGTAGTCATTAAAACCTACAATGGCGCGAAGAGCGACAAATAC
CACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTA
AAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGAA
CTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatttt
tgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACACA
AAGATagaattttaagaaagaaatccttaatttttaaaattgcattttcg
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007328XLOC_007328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013096-exon-sc0000162-1491911889:265633..266047TCONS_00013096-exon-sc0000162-1491911889:265633..266047Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:265633..266047TCONS_00013096-exon-sc0000162-1510915933:265633..266047Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:265633..266047TCONS_00013096-exon-sc0000162-1575043694:265633..266047Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1491911889:266248..266313TCONS_00013096-exon-sc0000162-1491911889:266248..266313Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:266248..266313TCONS_00013096-exon-sc0000162-1510915933:266248..266313Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:266248..266313TCONS_00013096-exon-sc0000162-1575043694:266248..266313Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1491911889:266994..267056TCONS_00013096-exon-sc0000162-1491911889:266994..267056Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:266994..267056TCONS_00013096-exon-sc0000162-1510915933:266994..267056Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:266994..267056TCONS_00013096-exon-sc0000162-1575043694:266994..267056Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1491911889:267902..268126TCONS_00013096-exon-sc0000162-1491911889:267902..268126Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:267902..268126TCONS_00013096-exon-sc0000162-1510915933:267902..268126Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:267902..268126TCONS_00013096-exon-sc0000162-1575043694:267902..268126Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1491911889:268434..269062TCONS_00013096-exon-sc0000162-1491911889:268434..269062Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:268434..269062TCONS_00013096-exon-sc0000162-1510915933:268434..269062Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:268434..269062TCONS_00013096-exon-sc0000162-1575043694:268434..269062Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1491911889:269330..270834TCONS_00013096-exon-sc0000162-1491911889:269330..270834Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1510915933:269330..270834TCONS_00013096-exon-sc0000162-1510915933:269330..270834Clytia hemisphaericaexon
TCONS_00013096-exon-sc0000162-1575043694:269330..270834TCONS_00013096-exon-sc0000162-1575043694:269330..270834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:265633..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.000217797	0.226845	0	0	0	0	0.000332776	3.94199e-05	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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